Miyakogusa Predicted Gene

Lj4g3v3014190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014190.1 Non Chatacterized Hit- tr|F6HU30|F6HU30_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,52.74,0,ZF_RING_1,Zinc finger, RING-type, conserved site;
seg,NULL; OS12G0209700 PROTEIN,NULL; JUMONJI DOMAI,CUFF.52041.1
         (1250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710...   239   1e-62
AT4G10930.1 | Symbols:  | unknown protein; LOCATED IN: cellular_...   136   1e-31
AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657...    87   5e-17

>AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710923
           REVERSE LENGTH=192
          Length = 192

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 138/192 (71%), Gaps = 18/192 (9%)

Query: 1   MEADFS----MNDETVTLTHDPFDANHDNVNVDVEAERCGICMDTVVDRGVLDCCQHWFC 56
           ME DF     + DE V + H        N   ++E ERCGICMD ++DRGVLDCCQHWFC
Sbjct: 1   MELDFDASNLVEDEAVEVEH--------NGMTEIEGERCGICMDIIIDRGVLDCCQHWFC 52

Query: 57  FVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDSLYGEDDWSIEGTNNTLSF 116
           F CIDNW+TI NLCPLCQ EFQLITCVPV+D+  S+KV++D + G++D  IE   + +S 
Sbjct: 53  FECIDNWSTIMNLCPLCQREFQLITCVPVFDSGESSKVDEDLVSGDEDCCIEEETDVVSS 112

Query: 117 PS------YYIDENAVICLDGDGCKIRNELSTIEGDSDLDTSIACDLCDRWYHAFCVGFD 170
           PS      +YIDENAV+CLDGD CKIRN  S IEGDS+LDTSIACD CD WYHA CVGFD
Sbjct: 113 PSHYIDDTHYIDENAVVCLDGDLCKIRNTFSYIEGDSNLDTSIACDSCDMWYHAICVGFD 172

Query: 171 TEGTSESTWLCP 182
            E  SE TW+CP
Sbjct: 173 VENASEDTWVCP 184


>AT4G10930.1 | Symbols:  | unknown protein; LOCATED IN:
            cellular_component unknown; EXPRESSED IN: 23 plant
            structures; EXPRESSED DURING: 14 growth stages; Has 30201
            Blast hits to 17322 proteins in 780 species: Archae - 12;
            Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
            5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
            BLink). | chr4:6705178-6708846 REVERSE LENGTH=984
          Length = 984

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 111/174 (63%), Gaps = 31/174 (17%)

Query: 1087 SEFEELYGPDKE-----PLIKKFPD--VESRSLCGEGKTDTLTE---ANY---CHNDEKH 1133
            +E EELYGP  E     PLI+ F +  V++++   E +++T  E   +N+   C  ++K 
Sbjct: 818  AECEELYGPGTEKLVERPLIEGFAENGVKAKAPDSECESNTQREFIASNFEITCIQEKK- 876

Query: 1134 VLDKTVNASKLSNDKSATVSETGEKIRKEEEKSDIAAKQSDSVNHVARKVEAYIKEHIRP 1193
             L +++   K S           EK  KEE+      K     N + +KVEAYIKEHIRP
Sbjct: 877  -LPRSIQKCKPS-----------EKPSKEEK-----GKADGFGNSITKKVEAYIKEHIRP 919

Query: 1194 LCKSGVITAEQYRWAVAKTTEKVMKYHSKSKNANFLIKEGEKVKKLAEEYVEAA 1247
            LCKSGVI  EQYRWAV KTTEKVMKYHSK+K+ANFLIKEG+K+KKLAE+YVE A
Sbjct: 920  LCKSGVINVEQYRWAVTKTTEKVMKYHSKAKSANFLIKEGDKIKKLAEQYVETA 973


>AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657022
           FORWARD LENGTH=883
          Length = 883

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 26  VNVDVEAERCGICM---DTVVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITC 82
           V  DV    CGIC+   D    +G LDCC H+FCF CI  W+ + + CPLC+  F+ I+ 
Sbjct: 404 VKRDVIKNVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTIS- 462

Query: 83  VPVYDTIGSNKVEDDSLYGEDDWSIEGTNNTLSFPSYYIDENAVICLDGDGCKIRNELST 142
            P   T G +  E      E D   + T   L   SY      +IC +   C        
Sbjct: 463 KPARSTPGVDLREVVIPVPERDQVYQPTEEELR--SYLDPYENIICTE---CH------- 510

Query: 143 IEGDSDLDTSIACDLCDRWYHAFCVGFDTEGTSESTWLCPRC 184
            +GD D    + CDLCD   H +CVG   E   E  W C  C
Sbjct: 511 -QGDDD-GLMLLCDLCDSSAHTYCVGLGRE-VPEGNWYCEGC 549