Miyakogusa Predicted Gene

Lj4g3v3004120.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3004120.3 Non Chatacterized Hit- tr|I1KPK3|I1KPK3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.12812
PE,82.58,0,coiled-coil,NULL; seg,NULL; PPR,Pentatricopeptide
repeat,CUFF.52030.3
         (571 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64430.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   666   0.0  
AT1G64430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   666   0.0  

>AT1G64430.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23933541-23936336 FORWARD
           LENGTH=559
          Length = 559

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/509 (64%), Positives = 396/509 (77%), Gaps = 8/509 (1%)

Query: 58  SRNETSDDHTVSAS--DQQLLLRISATAKDADEALQMIADNAETNSGGGVVSTSDCCSII 115
           SR+       VS+S  D +LL  +SA  +DADEAL MI+D   +N GG +V   DC SII
Sbjct: 56  SRDSVGSAADVSSSILDDELLSSVSAV-RDADEALAMISDRFGSNRGG-IVELEDCRSII 113

Query: 116 SAALSRNNPQLALSVFYAMRASFRQVDENGPLVERWKWPRPNANVYTVLINGLAASLRVS 175
           SAA+SR N  LALS+FY MRASF   D  G   +RW W RP+  VYT+L+NGLAASLRVS
Sbjct: 114 SAAVSRGNVDLALSIFYTMRASF---DLGGSDNDRWSWSRPDVEVYTMLVNGLAASLRVS 170

Query: 176 DALSVIKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVS 235
           D+L +I+ IC VG+SP EEVPFGKIVRCPSC IA+AVAQPQ G+QIVSCA CRYQYEL S
Sbjct: 171 DSLRIIRDICRVGISPAEEVPFGKIVRCPSCLIAIAVAQPQHGVQIVSCANCRYQYELFS 230

Query: 236 GDIVSIQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVARTHRFATETVDL 295
           GDI SI SEE+  DI  WE+GLR +++ K  I S+VHSIVVQTPSG ARTHRFATET +L
Sbjct: 231 GDITSIDSEELGKDIPLWEKGLRLIQIKKNKITSSVHSIVVQTPSGTARTHRFATETAEL 290

Query: 296 PAQAGERVSVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKE 355
           PAQ GERV++A AAPSNVYR+VGPFKF  +AP+FYPGE M +T HKDGRES+LLR P K+
Sbjct: 291 PAQEGERVTIASAAPSNVYRQVGPFKFISKAPNFYPGEPMSLTKHKDGRESILLRPPSKD 350

Query: 356 ENXXXXXXXXXXXXXAVFATGDAASGLIDPSLPQLLSIVAVSSLAVGSTLNSFVLPQLNQ 415
            +             A+ ATGDAASG+IDPSLPQLLS+  V+SLA+G+T+NSFVLP+LNQ
Sbjct: 351 GD-KILQPSFLIPLLAILATGDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQ 409

Query: 416 LPQRSVETTAVKQQLLSQYDVLQSRINGLKEAAEKEIWMLARMCQLENKISAVGEPSYRT 475
           LP+R+V+   +KQQLLSQYDVLQ RI  LKEA EKE+WMLARMCQLENKI AVGEP+YRT
Sbjct: 410 LPERTVDVVGIKQQLLSQYDVLQRRIRDLKEAVEKEVWMLARMCQLENKILAVGEPAYRT 469

Query: 476 RISKVKRVRESLQNSLQGRIELIASYARXXXXXXXXXXXXTDVLAAETASDVDSITEQIE 535
           R ++VK+VRESL+NS++G+I+LI SYAR            +DVLAAE  ++ ++I +QIE
Sbjct: 470 RRTRVKKVRESLENSIKGKIDLIDSYARISSMIEIEVEMDSDVLAAEAVNNTENIAQQIE 529

Query: 536 QIMELENLEERWKMQAEASDEAERLLSSQ 564
           QIMELENLEE+WK+QAEA+DEAERLLSSQ
Sbjct: 530 QIMELENLEEKWKIQAEANDEAERLLSSQ 558


>AT1G64430.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23933541-23936336 FORWARD
           LENGTH=559
          Length = 559

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/509 (64%), Positives = 396/509 (77%), Gaps = 8/509 (1%)

Query: 58  SRNETSDDHTVSAS--DQQLLLRISATAKDADEALQMIADNAETNSGGGVVSTSDCCSII 115
           SR+       VS+S  D +LL  +SA  +DADEAL MI+D   +N GG +V   DC SII
Sbjct: 56  SRDSVGSAADVSSSILDDELLSSVSAV-RDADEALAMISDRFGSNRGG-IVELEDCRSII 113

Query: 116 SAALSRNNPQLALSVFYAMRASFRQVDENGPLVERWKWPRPNANVYTVLINGLAASLRVS 175
           SAA+SR N  LALS+FY MRASF   D  G   +RW W RP+  VYT+L+NGLAASLRVS
Sbjct: 114 SAAVSRGNVDLALSIFYTMRASF---DLGGSDNDRWSWSRPDVEVYTMLVNGLAASLRVS 170

Query: 176 DALSVIKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVS 235
           D+L +I+ IC VG+SP EEVPFGKIVRCPSC IA+AVAQPQ G+QIVSCA CRYQYEL S
Sbjct: 171 DSLRIIRDICRVGISPAEEVPFGKIVRCPSCLIAIAVAQPQHGVQIVSCANCRYQYELFS 230

Query: 236 GDIVSIQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVARTHRFATETVDL 295
           GDI SI SEE+  DI  WE+GLR +++ K  I S+VHSIVVQTPSG ARTHRFATET +L
Sbjct: 231 GDITSIDSEELGKDIPLWEKGLRLIQIKKNKITSSVHSIVVQTPSGTARTHRFATETAEL 290

Query: 296 PAQAGERVSVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKE 355
           PAQ GERV++A AAPSNVYR+VGPFKF  +AP+FYPGE M +T HKDGRES+LLR P K+
Sbjct: 291 PAQEGERVTIASAAPSNVYRQVGPFKFISKAPNFYPGEPMSLTKHKDGRESILLRPPSKD 350

Query: 356 ENXXXXXXXXXXXXXAVFATGDAASGLIDPSLPQLLSIVAVSSLAVGSTLNSFVLPQLNQ 415
            +             A+ ATGDAASG+IDPSLPQLLS+  V+SLA+G+T+NSFVLP+LNQ
Sbjct: 351 GD-KILQPSFLIPLLAILATGDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQ 409

Query: 416 LPQRSVETTAVKQQLLSQYDVLQSRINGLKEAAEKEIWMLARMCQLENKISAVGEPSYRT 475
           LP+R+V+   +KQQLLSQYDVLQ RI  LKEA EKE+WMLARMCQLENKI AVGEP+YRT
Sbjct: 410 LPERTVDVVGIKQQLLSQYDVLQRRIRDLKEAVEKEVWMLARMCQLENKILAVGEPAYRT 469

Query: 476 RISKVKRVRESLQNSLQGRIELIASYARXXXXXXXXXXXXTDVLAAETASDVDSITEQIE 535
           R ++VK+VRESL+NS++G+I+LI SYAR            +DVLAAE  ++ ++I +QIE
Sbjct: 470 RRTRVKKVRESLENSIKGKIDLIDSYARISSMIEIEVEMDSDVLAAEAVNNTENIAQQIE 529

Query: 536 QIMELENLEERWKMQAEASDEAERLLSSQ 564
           QIMELENLEE+WK+QAEA+DEAERLLSSQ
Sbjct: 530 QIMELENLEEKWKIQAEANDEAERLLSSQ 558