Miyakogusa Predicted Gene

Lj4g3v3003910.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3003910.1 tr|I3SS10|I3SS10_LOTJA Nucleoside diphosphate
kinase OS=Lotus japonicus PE=2 SV=1,97.87,0,Nucleoside diphosphate
kinase, NDK,Nucleoside diphosphate kinase; no description,Nucleoside
diphosph,CUFF.52020.1
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 |...   335   2e-92
AT4G23895.3 | Symbols:  | Pleckstrin homology (PH) domain-contai...   333   4e-92
AT4G23900.1 | Symbols:  | Nucleoside diphosphate kinase family p...   333   5e-92
AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase fam...   190   7e-49
AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDP...   187   5e-48
AT1G17410.1 | Symbols:  | Nucleoside diphosphate kinase family p...    89   2e-18
AT1G17410.2 | Symbols:  | Nucleoside diphosphate kinase family p...    83   2e-16

>AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 |
           chr4:6732780-6734298 REVERSE LENGTH=238
          Length = 238

 Score =  335 bits (858), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 154/176 (87%), Positives = 170/176 (96%)

Query: 60  TWVSGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGI 119
           +W++G LALPAAAYM+QDQEV AAE+ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGI
Sbjct: 63  SWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGI 122

Query: 120 KVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQK 179
           KV++PSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQK
Sbjct: 123 KVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQK 182

Query: 180 SQPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 235
           S+PGTIRGDLAV VGRNIIHGSDGPETAKDEI LWFKP+ELV++TSN+EKW+YG N
Sbjct: 183 SEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLYGDN 238


>AT4G23895.3 | Symbols:  | Pleckstrin homology (PH)
           domain-containing protein | chr4:12422883-12426318
           FORWARD LENGTH=467
          Length = 467

 Score =  333 bits (855), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 154/176 (87%), Positives = 168/176 (95%)

Query: 60  TWVSGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGI 119
           +W++G LALPAAA+MLQDQE  AAE+ERTFIAIKPDGVQRGLISEII+RFERKG+KLVGI
Sbjct: 292 SWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGI 351

Query: 120 KVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQK 179
           KV++PSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQK
Sbjct: 352 KVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQK 411

Query: 180 SQPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 235
           S+PGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPEELV++TSNAEKW+YG N
Sbjct: 412 SEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 467


>AT4G23900.1 | Symbols:  | Nucleoside diphosphate kinase family
           protein | chr4:12424505-12426318 FORWARD LENGTH=237
          Length = 237

 Score =  333 bits (854), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 154/176 (87%), Positives = 168/176 (95%)

Query: 60  TWVSGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGI 119
           +W++G LALPAAA+MLQDQE  AAE+ERTFIAIKPDGVQRGLISEII+RFERKG+KLVGI
Sbjct: 62  SWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGI 121

Query: 120 KVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQK 179
           KV++PSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQK
Sbjct: 122 KVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQK 181

Query: 180 SQPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 235
           S+PGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPEELV++TSNAEKW+YG N
Sbjct: 182 SEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 237


>AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase family
           protein | chr4:5923424-5924366 FORWARD LENGTH=169
          Length = 169

 Score =  190 bits (483), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 115/148 (77%), Gaps = 1/148 (0%)

Query: 85  LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPSKEFAQKHYHDLKERPFFNG 144
           +E+TFI IKPDGVQRGLI E+I RFE+KGF L G+K++   + FA+KHY DL  + FF+G
Sbjct: 21  MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 80

Query: 145 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIRGDLAVVVGRNIIHGSDGP 204
           L +++ SGPV+AM+WEG+ V+  GRK+IGAT+P  S+PGTIRGD A+ +GRN+IHGSD  
Sbjct: 81  LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 140

Query: 205 ETAKDEIKLWFKPEELVNFTSNAEKWVY 232
           E+A+ EI LWF P+  VN+ S+   WVY
Sbjct: 141 ESARKEIALWF-PDGPVNWQSSVHPWVY 167


>AT5G63310.1 | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2
           | nucleoside diphosphate kinase 2 |
           chr5:25372122-25373838 REVERSE LENGTH=231
          Length = 231

 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 109/148 (73%)

Query: 84  ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPSKEFAQKHYHDLKERPFFN 143
           ++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+G+K+    KE A++HY DL  + FF 
Sbjct: 82  DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 141

Query: 144 GLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIRGDLAVVVGRNIIHGSDG 203
            L E+++SGPV+ M WEG GV+   RKLIG TDP +++PGTIRGDLAV  GRNI+HGSD 
Sbjct: 142 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDS 201

Query: 204 PETAKDEIKLWFKPEELVNFTSNAEKWV 231
           PE  K EI LWFK  EL  + S    W+
Sbjct: 202 PENGKREIGLWFKEGELCKWDSALATWL 229


>AT1G17410.1 | Symbols:  | Nucleoside diphosphate kinase family
           protein | chr1:5968627-5969780 REVERSE LENGTH=181
          Length = 181

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 82  AAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPSKEFAQKHYHDLKERPF 141
           A+  ERT   IKPDGV      EI +     GF +V   +    KE A   Y +   R F
Sbjct: 29  ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSF 88

Query: 142 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQK---SQPGTIRGDLAVVVGRNII 198
           F  L  +++SGPV+ MV E    ++  R LIG TD +K   S P +IR        +N +
Sbjct: 89  FPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCV 148

Query: 199 HGSDGPETAKDEIKLWFK 216
           HGSD   +A+ EIK +FK
Sbjct: 149 HGSDSTSSAEREIKFFFK 166


>AT1G17410.2 | Symbols:  | Nucleoside diphosphate kinase family
           protein | chr1:5968627-5969444 REVERSE LENGTH=144
          Length = 144

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 92  IKPDGVQRGLISEIISRFERKGFKLVGIKVLIPSKEFAQKHYHDLKERPFFNGLCEFLSS 151
           IKPDGV      EI +     GF +V   +    KE A   Y +   R FF  L  +++S
Sbjct: 2   IKPDGVSGNYTEEIKTIVVEAGFNIVKEMLTQLDKETASAFYEEHSSRSFFPHLVTYMTS 61

Query: 152 GPVIAMVWEGEGVITYGRKLIGATDPQK---SQPGTIRGDLAVVVGRNIIHGSDGPETAK 208
           GPV+ MV E    ++  R LIG TD +K   S P +IR        +N +HGSD   +A+
Sbjct: 62  GPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPHSIRALCGKNSQKNCVHGSDSTSSAE 121

Query: 209 DEIKLWFK 216
            EIK +FK
Sbjct: 122 REIKFFFK 129