Miyakogusa Predicted Gene

Lj4g3v3002670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3002670.1 Non Chatacterized Hit- tr|F2U4M4|F2U4M4_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,33.54,0.000000000000006,coiled-coil,NULL; seg,NULL; high mobility
group,High mobility group, superfamily; HMG_box,High
mobil,CUFF.52004.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23800.1 | Symbols:  | HMG (high mobility group) box protein ...   218   3e-57
AT4G23800.2 | Symbols:  | HMG (high mobility group) box protein ...   218   4e-57
AT4G11080.1 | Symbols:  | HMG (high mobility group) box protein ...   217   8e-57

>AT4G23800.1 | Symbols:  | HMG (high mobility group) box protein |
           chr4:12390228-12392516 FORWARD LENGTH=456
          Length = 456

 Score =  218 bits (556), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 168/310 (54%), Gaps = 17/310 (5%)

Query: 10  VPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKNQQSKQQSFEKDLLEMQEKM 69
            P K+ R  RKALK+K            ++ E+  SP+S   +S  +SFE+DL+EMQ  +
Sbjct: 8   APTKKPRNSRKALKQK-----------NELVETPPSPVSVKGKS-AKSFEQDLMEMQTML 55

Query: 70  QQMRXXXXXXXXXXXARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKPTMNLPM- 128
           ++M+            +D                                FKP M     
Sbjct: 56  EKMKIEKDKTEELLKEKDEILRKKEEELETRDAEQEKLKVELKKLQKMKEFKPNMTFACG 115

Query: 129 ---LXXXXXXXXXXXXXNGGSETKRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAK 185
              L                 ETKRPS  Y+LW KDQW+E+KK NPEA+FKE SN+LGAK
Sbjct: 116 QSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAK 175

Query: 186 WKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLEEEHKQKTAMELLEQYMQFX 245
           WK++SAE+KKPYEERY  EKEAYL V AKEKRE EAMKLLE++ KQ+TAMELL+QY+ F 
Sbjct: 176 WKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREKEAMKLLEDDQKQRTAMELLDQYLNFV 235

Query: 246 XXXXXXXXXXXXXXXX-XXXXXXMSAYFLFTNERRAALLAENMKVLEVPKVTAEEWKNMT 304
                                  +SA+ ++ NERRAAL  EN  V+EV K+T EEWKN++
Sbjct: 236 QEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALREENKSVVEVAKITGEEWKNLS 295

Query: 305 EEQKRPYEEV 314
           +++K PYE+V
Sbjct: 296 DKKKAPYEKV 305


>AT4G23800.2 | Symbols:  | HMG (high mobility group) box protein |
           chr4:12390228-12392516 FORWARD LENGTH=450
          Length = 450

 Score =  218 bits (556), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 168/310 (54%), Gaps = 17/310 (5%)

Query: 10  VPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKNQQSKQQSFEKDLLEMQEKM 69
            P K+ R  RKALK+K            ++ E+  SP+S   +S  +SFE+DL+EMQ  +
Sbjct: 8   APTKKPRNSRKALKQK-----------NELVETPPSPVSVKGKS-AKSFEQDLMEMQTML 55

Query: 70  QQMRXXXXXXXXXXXARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKPTMNLPM- 128
           ++M+            +D                                FKP M     
Sbjct: 56  EKMKIEKDKTEELLKEKDEILRKKEEELETRDAEQEKLKVELKKLQKMKEFKPNMTFACG 115

Query: 129 ---LXXXXXXXXXXXXXNGGSETKRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAK 185
              L                 ETKRPS  Y+LW KDQW+E+KK NPEA+FKE SN+LGAK
Sbjct: 116 QSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAK 175

Query: 186 WKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLEEEHKQKTAMELLEQYMQFX 245
           WK++SAE+KKPYEERY  EKEAYL V AKEKRE EAMKLLE++ KQ+TAMELL+QY+ F 
Sbjct: 176 WKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREKEAMKLLEDDQKQRTAMELLDQYLNFV 235

Query: 246 XXXXXXXXXXXXXXXX-XXXXXXMSAYFLFTNERRAALLAENMKVLEVPKVTAEEWKNMT 304
                                  +SA+ ++ NERRAAL  EN  V+EV K+T EEWKN++
Sbjct: 236 QEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALREENKSVVEVAKITGEEWKNLS 295

Query: 305 EEQKRPYEEV 314
           +++K PYE+V
Sbjct: 296 DKKKAPYEKV 305


>AT4G11080.1 | Symbols:  | HMG (high mobility group) box protein |
           chr4:6760898-6763272 REVERSE LENGTH=446
          Length = 446

 Score =  217 bits (553), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 171/315 (54%), Gaps = 25/315 (7%)

Query: 4   TVAVAEVPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKNQQSKQQSFEKDLL 63
           TV+      K+SR  RKALK+K            ++ ESS  P+S ++  + +SFEKDL+
Sbjct: 3   TVSSDPAHAKKSRNSRKALKQK-----------NEIVESS--PVS-DKGKETKSFEKDLM 48

Query: 64  EMQEKMQQMRXXXXXXXXXXXARDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKPT 123
           EMQ  +++M+            +D                                FKP 
Sbjct: 49  EMQAMLEKMKIEKEKTEDLLKEKDEILRKKEVEQEKLKTELKKLQKMKE-------FKPN 101

Query: 124 MNLPM---LXXXXXXXXXXXXXNGGSETKRPSPPYILWMKDQWSEIKKSNPEAEFKEISN 180
           M       L                +ETKRPS PYILW KD W+E+KK NPEA+FKE SN
Sbjct: 102 MTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSN 161

Query: 181 MLGAKWKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLEEEHKQKTAMELLEQ 240
           +LGAKWK +SAEEKKPYEE+Y A+KEAYL V  KEKRE EAMKLL++E KQKTAMELL+Q
Sbjct: 162 ILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLDDEQKQKTAMELLDQ 221

Query: 241 YMQFXXXXXXXXXXXXXXXXX-XXXXXXMSAYFLFTNERRAALLAENMKVLEVPKVTAEE 299
           Y+ F                        +SAY ++ NERRAAL  EN  V+EV K+  EE
Sbjct: 222 YLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKSVIEVAKMAGEE 281

Query: 300 WKNMTEEQKRPYEEV 314
           WKN++EE+K PY+++
Sbjct: 282 WKNLSEEKKAPYDQM 296