Miyakogusa Predicted Gene

Lj4g3v2950000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2950000.1 Non Chatacterized Hit- tr|Q84VD8|Q84VD8_ORYSJ
Putative myosin OS=Oryza sativa subsp. japonica PE=2
S,39.58,5e-19,NT-C2,EEIG1/EHBP1 N-terminal domain; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.52077.1
         (242 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63300.1 | Symbols:  | Myosin heavy chain-related protein | c...   196   1e-50
AT5G41140.2 | Symbols:  | Myosin heavy chain-related protein | c...   179   1e-45
AT5G41140.1 | Symbols:  | Myosin heavy chain-related protein | c...   179   1e-45
AT5G52280.1 | Symbols:  | Myosin heavy chain-related protein | c...   172   2e-43
AT1G22060.1 | Symbols:  | LOCATED IN: vacuole; EXPRESSED IN: 23 ...   142   2e-34

>AT1G63300.1 | Symbols:  | Myosin heavy chain-related protein |
           chr1:23482193-23486067 FORWARD LENGTH=1029
          Length = 1029

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 130/186 (69%), Gaps = 5/186 (2%)

Query: 1   MF---RWRNDKNRVKAVFKLHFHVTQVLQPGVDSLVLSIVPGDIGKVTTRLEKALVRGGV 57
           MF   RWR++KNR+K VF+L FH TQ  Q   + L+LS+VPGDIGK T R EKA+V  G 
Sbjct: 1   MFKSARWRSEKNRIKVVFRLKFHATQASQFNTEGLILSLVPGDIGKPTARSEKAIVNDGH 60

Query: 58  CRWENPVYETVKFIQDPKTGKFSERVYYFVVS-TGLSKGSSFGEVSVDFASYADATKLSS 116
           CRWE PVYETVKF++D KTGK ++R+Y+ +VS TG ++G   GE S+DFA Y DATK  +
Sbjct: 61  CRWEIPVYETVKFLKDVKTGKVNQRIYHLIVSTTGSARGGLVGETSIDFADYVDATKTCN 120

Query: 117 VSLPIKNSHSDAVLHVSIQR-LQDNNDTREEEECEDAKLKPHDRSLRTYLSNGDIDGLSK 175
           VSLP++NS S A+LHVSIQR L+ ++  R+ +ECE          L+++ S GD D   K
Sbjct: 121 VSLPLQNSSSKALLHVSIQRQLEFDDPQRDVDECETPVKMSQGLDLKSHFSIGDADENRK 180

Query: 176 SDSSED 181
           SDS E+
Sbjct: 181 SDSHEE 186


>AT5G41140.2 | Symbols:  | Myosin heavy chain-related protein |
           chr5:16468726-16472546 FORWARD LENGTH=976
          Length = 976

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 129/187 (68%), Gaps = 7/187 (3%)

Query: 1   MF---RWRNDK-NRVKAVFKLHFHVTQVLQPGVDSLVLSIVPGDIGKVTTRLEKALVRGG 56
           MF   RWR++K N++K VFKL FH TQV Q   + L +S+VPGD+GK T + EKA+V  G
Sbjct: 1   MFKSSRWRSEKSNKIKIVFKLQFHATQVTQLKAEGLTISVVPGDVGKSTGKAEKAMVLDG 60

Query: 57  VCRWENPVYETVKFIQDPKTGKFSERVYYFVVS-TGLSKGSSFGEVSVDFASYADATKLS 115
            CRWE+PVYETVKF+QD KTGK ++R+Y+ V+S TG +K    GE S+DFA Y DA K  
Sbjct: 61  HCRWESPVYETVKFLQDVKTGKVNQRIYHLVMSTTGSTKSGVVGETSIDFADYVDAIKTC 120

Query: 116 SVSLPIKNSHSDAVLHVSIQRLQDNND-TREEEECEDAKLKPHDRSLRTYLSNGDIDGLS 174
           +VSLP++NS+S A+LHV+IQR  +N D  R  +E +    +   + L+++LS  + D   
Sbjct: 121 NVSLPLQNSNSKAMLHVAIQRQLENADPQRVVKESDSLVKRSRGQDLKSHLS-IEADESH 179

Query: 175 KSDSSED 181
           KSDS E+
Sbjct: 180 KSDSQEE 186


>AT5G41140.1 | Symbols:  | Myosin heavy chain-related protein |
           chr5:16468726-16472546 FORWARD LENGTH=983
          Length = 983

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 129/187 (68%), Gaps = 7/187 (3%)

Query: 1   MF---RWRNDK-NRVKAVFKLHFHVTQVLQPGVDSLVLSIVPGDIGKVTTRLEKALVRGG 56
           MF   RWR++K N++K VFKL FH TQV Q   + L +S+VPGD+GK T + EKA+V  G
Sbjct: 1   MFKSSRWRSEKSNKIKIVFKLQFHATQVTQLKAEGLTISVVPGDVGKSTGKAEKAMVLDG 60

Query: 57  VCRWENPVYETVKFIQDPKTGKFSERVYYFVVS-TGLSKGSSFGEVSVDFASYADATKLS 115
            CRWE+PVYETVKF+QD KTGK ++R+Y+ V+S TG +K    GE S+DFA Y DA K  
Sbjct: 61  HCRWESPVYETVKFLQDVKTGKVNQRIYHLVMSTTGSTKSGVVGETSIDFADYVDAIKTC 120

Query: 116 SVSLPIKNSHSDAVLHVSIQRLQDNND-TREEEECEDAKLKPHDRSLRTYLSNGDIDGLS 174
           +VSLP++NS+S A+LHV+IQR  +N D  R  +E +    +   + L+++LS  + D   
Sbjct: 121 NVSLPLQNSNSKAMLHVAIQRQLENADPQRVVKESDSLVKRSRGQDLKSHLS-IEADESH 179

Query: 175 KSDSSED 181
           KSDS E+
Sbjct: 180 KSDSQEE 186


>AT5G52280.1 | Symbols:  | Myosin heavy chain-related protein |
           chr5:21226959-21230109 FORWARD LENGTH=853
          Length = 853

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 127/184 (69%), Gaps = 2/184 (1%)

Query: 1   MFR-WRNDKNRVKAVFKLHFHVTQVLQPGVDSLVLSIVPGDIGKVTTRLEKALVRGGVCR 59
           MF+ WRNDKN++KAVFKL F  TQV +    +L++S+VP D+GK T +LEK+ V+ G+C 
Sbjct: 1   MFKSWRNDKNKIKAVFKLQFQATQVPKLKKTALMISLVPDDVGKPTFKLEKSEVKEGICS 60

Query: 60  WENPVYETVKFIQDPKTGKFSERVYYFVVSTGLSKGSSFGEVSVDFASYADATKLSSVSL 119
           WENP+Y +VK I++PKTG   E++Y+FVV+TG SK    GE S+DFA +       +VSL
Sbjct: 61  WENPIYVSVKLIKEPKTGIVREKIYHFVVATGSSKSGFLGEASIDFADFLTEADPLTVSL 120

Query: 120 PIKNSHSDAVLHVSIQRLQDNNDTREEEECEDAKLKPHDRSLRTYLSNGDIDGLSKSDSS 179
           P+K ++S AVL+V+I ++Q  +D +  EE +D  L   D S ++  SN D++G ++ + S
Sbjct: 121 PLKFANSGAVLNVTIHKIQGASDLKFIEENKDQTLSKED-SFKSLQSNDDLEGYNQDERS 179

Query: 180 EDVS 183
            DV+
Sbjct: 180 LDVN 183


>AT1G22060.1 | Symbols:  | LOCATED IN: vacuole; EXPRESSED IN: 23
           plant structures; EXPRESSED DURING: 13 growth stages;
           BEST Arabidopsis thaliana protein match is: FBD, F-box
           and Leucine Rich Repeat domains containing protein
           (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714
           proteins in 2257 species: Archae - 1436; Bacteria -
           11314; Metazoa - 40747; Fungi - 7706; Plants - 4675;
           Viruses - 308; Other Eukaryotes - 18553 (source: NCBI
           BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999
          Length = 1999

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 92/148 (62%)

Query: 1   MFRWRNDKNRVKAVFKLHFHVTQVLQPGVDSLVLSIVPGDIGKVTTRLEKALVRGGVCRW 60
           + +W+ +K +VK VF+L FH T V Q G D L +S +P D  K T +  KALVR G C+W
Sbjct: 4   LAKWKLEKAKVKVVFRLQFHATHVPQAGWDKLFISFIPADSVKATAKTTKALVRNGTCKW 63

Query: 61  ENPVYETVKFIQDPKTGKFSERVYYFVVSTGLSKGSSFGEVSVDFASYADATKLSSVSLP 120
            +P+YET + +QD +T +F E++Y  VV+ G S+ S  GE  ++ A YADA K  +V LP
Sbjct: 64  GDPIYETTRLLQDTRTKQFDEKLYKIVVAMGTSRSSILGEAMINLAEYADALKPFAVILP 123

Query: 121 IKNSHSDAVLHVSIQRLQDNNDTREEEE 148
           ++     A+LHV+IQ L      RE E+
Sbjct: 124 LQGCDPGAILHVTIQLLTSKTGFREFEQ 151