Miyakogusa Predicted Gene

Lj4g3v2928710.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2928710.2 tr|A9TN20|A9TN20_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,29.22,9e-18,S1,Ribosomal protein S1, RNA-binding domain;
Nucleic acid-binding proteins,Nucleic acid-binding, OB-,CUFF.51877.2
         (737 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   657   0.0  
AT3G23700.1 | Symbols:  | Nucleic acid-binding proteins superfam...    78   2e-14
AT3G11964.1 | Symbols:  | RNA binding;RNA binding | chr3:3793957...    54   5e-07

>AT1G12800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:4361778-4365189 REVERSE LENGTH=767
          Length = 767

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/750 (50%), Positives = 494/750 (65%), Gaps = 73/750 (9%)

Query: 37  KQRNKVFAASRSQEEDESPQLNSEDLMELKFARLLGEDPKLTLAKIMGRRANPDVSYLDI 96
           KQ+  + +AS+ +E    P+LN  D MEL F RLLGEDPKLTLAKI+ R+ +P+ S++DI
Sbjct: 42  KQKKFLVSASKREE----PKLNEWDQMELNFGRLLGEDPKLTLAKIVARKVDPEASFIDI 97

Query: 97  EKSFYKKKGKVVEIEELPFEGSKG--RKLSTKLDDLGLVRPVPAKGSTF-KPDYNKPALE 153
           EKSFYK KGK+ E+EE+P + SK   +K ++ LD L LV+PV   G  F +P   KP+  
Sbjct: 98  EKSFYKNKGKIPEVEEIPLDWSKDNKKKSTSSLDGLKLVKPVLKDGVKFERPVMKKPSPV 157

Query: 154 IKRPVRTESKEGDVRKIGVPNVALRKPTVYKXXXXXXFSSRRRMKPNLALKMSSEPVSEN 213
           +K+P+        V+++  PNV LRKP+ +         S+ R+KPNL LKM +E  +E 
Sbjct: 158 LKKPLVEAVAAPKVQRL--PNVILRKPSSFYTSNGDDEESKLRLKPNLTLKMRNERENER 215

Query: 214 FGDMTLLKKPGLPVPKNEAMTQEPSSLLGDQRNNDSELKMWKEESSDEIGNL---TLLEQ 270
           F DMTLL+KP            EP S++ ++ +      +  EE   E G     TLLE+
Sbjct: 216 FSDMTLLRKP------------EPVSVVAEEEDKPLSDDLTMEEGEQEGGTYSQYTLLEK 263

Query: 271 PH---KPISKKEE------------------------QFEDEKVVVPNEGVEQLEQRDLE 303
           P    +P++ +EE                        + E+ +  V + GV  LE  ++E
Sbjct: 264 PEARLQPVNVEEEVGDSGGVESSEIVNNSIQKPEARPELENIEKEVADSGV--LESSEIE 321

Query: 304 FHEEPTDLSQLSDSNSVGSRT---------------ELSVEAALQGKPKRLDQSELQTSN 348
            +  PT++ QL+   S   +T               +  VEA+LQGKP+RLD S  + S 
Sbjct: 322 NNSIPTEM-QLNSEMSSEEKTINSDPLERIPSKPISQTIVEASLQGKPQRLDPSSAEPSV 380

Query: 349 FVGEDATFLPPGGNGDNEELRNLVYTSDLQEIEKADWTRAEALMKTGRKEDVELVSCNTK 408
                 + +   G   + EL+     S L+E    DW +AE+L+KT  + DVEL+S +T+
Sbjct: 381 PNIGKPSVVNHEGRQVSVELKGPPTRSSLEE---NDWNKAESLVKTELRADVELISSSTR 437

Query: 409 GFIVSYGSLVGFLPYRNLPSKWKFLAFESWLRQKGLDPSMYKQNLSTITSYEAEKKKLSS 468
           GF VSYGSL+GFLPYRNL +KWKFLAFESWLR+KG+DPS Y+QNL  I   +   K  S 
Sbjct: 438 GFAVSYGSLIGFLPYRNLAAKWKFLAFESWLRRKGVDPSPYRQNLGVIGGQDVTSKSPSP 497

Query: 469 DSPPYVEIDGKVEDNISPDMKLEDLLRIYDQEKINFLSSFIGKKIRANALLADRKMRKLI 528
           DS    E+   +   +S DMKLEDLL +YD+EK  FLSSF+G+KI+ N ++A+R  RKLI
Sbjct: 498 DSSLDSEVATTINGEVSSDMKLEDLLMVYDREKQKFLSSFVGQKIKVNVVMANRNSRKLI 557

Query: 529 FSLRPKEKEELVEKKRNLMAKLQVGDIVKCRIEKITYFGIFVEVEGVPALIHQSEISWDA 588
           FS+RP+E EE VEKKR LMAKL+VGD+VKC I+KITYFGIF E+EGVPAL+HQSE+SWDA
Sbjct: 558 FSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEGVPALVHQSEVSWDA 617

Query: 589 TLNPTSYFKIGQVVEAKVHQLNFALKRIFLSLKEVMPDPLMNALESVVGG-HDPLDGRME 647
           TL+P SYFKIGQ+VEAKVHQL+FAL+RIFLSLKE+ PDPL  ALESVVGG +D L GR++
Sbjct: 618 TLDPASYFKIGQIVEAKVHQLDFALERIFLSLKEITPDPLTEALESVVGGDNDQLGGRLQ 677

Query: 648 EAQTDAEWPEVESLIVELQKIEGVQSVSKGRFFRRPGLATTFQVYMASIFENQYKLLARA 707
            A+ DAEWP+VESLI EL+ +EG+QSVSK RFF  PGLA TFQVYMA +FENQYKLLARA
Sbjct: 678 AAELDAEWPDVESLIKELEMVEGIQSVSKSRFFLSPGLAPTFQVYMAPMFENQYKLLARA 737

Query: 708 DNRIQEVMVQSSLDKELMKSAIMTCANRVE 737
            NR+QE++V++SL KE MKS IM+C NRVE
Sbjct: 738 GNRVQELIVEASLSKEEMKSTIMSCTNRVE 767


>AT3G23700.1 | Symbols:  | Nucleic acid-binding proteins superfamily
           | chr3:8531689-8533742 REVERSE LENGTH=392
          Length = 392

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 19/242 (7%)

Query: 507 SFIGKKIRANALLADRKMRKLIFSLRPKEKEELVEKKRNLMAKLQVGDIVKCRIEKITYF 566
           + +G K+    + AD + RKLI S    EK  L  K       + VGD+   R+  +  +
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILS----EKLALWPKYSQ---NVNVGDVFNGRVGSVEDY 209

Query: 567 GIFVEVE------GVPALIHQSEISWDATLNPTSYFKIGQVVEAKVHQLNFALKRIFLSL 620
           G F+ +        +  L+H SE+SWD   +     + G  V   V  ++    RI LS+
Sbjct: 210 GAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSI 269

Query: 621 KEVMPDPLMNALESVV---GGHDPLDGRMEEAQTDAEWPEVESLIVELQKIEGVQSVSKG 677
           K++  DPL+  L+ V+                 T    P +E+++ EL K +G+++V   
Sbjct: 270 KQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKIN 329

Query: 678 R-FFRRPGLATTFQVYMASI--FENQYKLLARADNRIQEVMVQSSLDKELMKSAIMTCAN 734
           R  F +  ++   Q+++++    + ++ LLARA  ++QE+ + +SL++  +K A+     
Sbjct: 330 RQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQVQEIHLTTSLEQGGIKKALQHVLE 389

Query: 735 RV 736
           RV
Sbjct: 390 RV 391


>AT3G11964.1 | Symbols:  | RNA binding;RNA binding |
            chr3:3793957-3806626 REVERSE LENGTH=1896
          Length = 1896

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 547  MAKLQVGDIVKCRIEKITYFGIFVEVE--GVPALIHQSEISWDATLNPTSYFKIGQVVEA 604
            + KL VGD++  RI ++  FG+F++++  G+  L H S++S D   N  + +K G+ V A
Sbjct: 1429 LKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRA 1488

Query: 605  KVHQLNFALKRIFLSLKEVMPDPLMNA 631
            K+ +L+   KRI L +K      LMN 
Sbjct: 1489 KILKLDEEKKRISLGMKSSY---LMNG 1512