Miyakogusa Predicted Gene
- Lj4g3v2883350.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2883350.2 Non Chatacterized Hit- tr|F7CSK0|F7CSK0_XENTR
Uncharacterized protein OS=Xenopus tropicalis GN=rmi1
,35.8,0.00000000000002,DUF1767,Domain of unknown function DUF1767;
seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NUL,CUFF.51839.2
(735 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63540.1 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown ... 293 2e-79
AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown ... 275 9e-74
AT5G19950.3 | Symbols: | Domain of unknown function (DUF1767) |... 62 2e-09
AT5G19950.2 | Symbols: | Domain of unknown function (DUF1767) |... 61 2e-09
AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) |... 61 2e-09
>AT5G63540.1 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown
function (DUF1767) | chr5:25441033-25444373 REVERSE
LENGTH=644
Length = 644
Score = 293 bits (751), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/281 (54%), Positives = 194/281 (69%), Gaps = 15/281 (5%)
Query: 76 SDFLRRLGLGLKREWLADCLRALQGSVRGFEGLDVAAHAKLCFEQFLFADMNFCGGGVLP 135
S+ L R+G+ LKREW CL L+ S+ F LDVAA AK CFEQF+F DMN CGGGVLP
Sbjct: 101 SEVLSRMGIKLKREWWVSCLSGLETSIPQFSYLDVAAKAKHCFEQFMFFDMNLCGGGVLP 160
Query: 136 ANVDSMHLDVLPGPYVLQVDEILNMSCPLRGRYQKANPGVKRCLKLSMTDGVQRVFGMEY 195
NV SM+ L GP+VLQVDEI+N+ CPL+GRY+ AN G+KRCLKLSMTDGVQRVFGMEY
Sbjct: 161 PNVASMNRIELAGPFVLQVDEIVNIGCPLKGRYENANAGLKRCLKLSMTDGVQRVFGMEY 220
Query: 196 RPIQALDVCAPSGLKVSISNVKVRRGLLMLDPETVQIKILGGLVEQLDAARQRLVKELNK 255
RPI+ L V AP+GLK+ +S+V+VR GLLML PE V+ +LGG+VE+L+ AR+RLV E+NK
Sbjct: 221 RPIKDLQVLAPAGLKIVVSSVQVRHGLLMLVPEIVE--VLGGMVEELEEARKRLVVEVNK 278
Query: 256 PPRGTRTKNGVLPPLSTRATLAAWP------SSRVDDPGHTAPMLHSTDSVHTN-NQGAG 308
PPRG RT+ GV+P L+TRATLAAW + V D G+ S ++ HT NQG
Sbjct: 279 PPRGKRTRVGVVPSLTTRATLAAWSLNGNDTGNHVHDTGNHVNSSASGNASHTQANQGIP 338
Query: 309 LSMPHTGHRLTSEDTLPMGEQNAASNSIPHTVSNAEARNMD 349
+ + T + + D + AS ++ TVS E +D
Sbjct: 339 VHVTRTHNSSRAMD------EPLASTNVGATVSRVEHMQID 373
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 561 DHPLMMSGDREVPFTYLASLSAKWAAMKEKSRLVQGKIKCFLTGVKGFQYKKRTTYELQA 620
+ P ++S + E PFTYLA LS KWA MK+ VQG+IKCFLTGVK FQ+K+++TYEL
Sbjct: 472 EGPSVLSTNTEKPFTYLAELSQKWAVMKDTIHFVQGRIKCFLTGVKKFQFKQQSTYELLC 531
Query: 621 YVDDGSLISEIIIDHDVVQKGIGYSPQEVTAALSSTDMKTVQN-MKETMRKFQAFLANFE 679
YVDDGSLI EI++ +DVVQK IG+S EVTAALSS+ ++ MKE +++FQ FLA+FE
Sbjct: 532 YVDDGSLICEILLHNDVVQKRIGHSSMEVTAALSSSAPTSLNAMMKEKLKRFQLFLADFE 591
Query: 680 GIIRVEFNRKSPIPLALEMNQGCPQSDAWLLMRRLK 715
GI+ VE NR S P+A+EMNQGC +DA LL+ R+K
Sbjct: 592 GIMVVEMNRSSQYPVAIEMNQGCSLTDARLLLDRIK 627
>AT5G63540.2 | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown
function (DUF1767) | chr5:25441033-25444373 REVERSE
LENGTH=677
Length = 677
Score = 275 bits (703), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 194/314 (61%), Gaps = 48/314 (15%)
Query: 76 SDFLRRLGLGLKREWLADCLRALQGSVRGFEGLDVAAHAKLCFEQFLFADMNFCGGGVLP 135
S+ L R+G+ LKREW CL L+ S+ F LDVAA AK CFEQF+F DMN CGGGVLP
Sbjct: 101 SEVLSRMGIKLKREWWVSCLSGLETSIPQFSYLDVAAKAKHCFEQFMFFDMNLCGGGVLP 160
Query: 136 ANVDSMHLDVLPGPYVLQVDEILNMSCPLRGRYQKANPGVKRCLKLSMTDGVQRVFGMEY 195
NV SM+ L GP+VLQVDEI+N+ CPL+GRY+ AN G+KRCLKLSMTDGVQRVFGMEY
Sbjct: 161 PNVASMNRIELAGPFVLQVDEIVNIGCPLKGRYENANAGLKRCLKLSMTDGVQRVFGMEY 220
Query: 196 RPIQALDVCAPSGLKVSISNVKVRRGLLMLDPETVQIKILGGLVEQLDAARQRLVKELNK 255
RPI+ L V AP+GLK+ +S+V+VR GLLML PE V+ +LGG+VE+L+ AR+RLV E+NK
Sbjct: 221 RPIKDLQVLAPAGLKIVVSSVQVRHGLLMLVPEIVE--VLGGMVEELEEARKRLVVEVNK 278
Query: 256 PPRG---------------------------------TRTKNGVLPPLSTRATLAAWP-- 280
PPRG T T+ GV+P L+TRATLAAW
Sbjct: 279 PPRGKSWKDYLQPVCFTDFFGYSFFDLENRDWFGVCLTITRVGVVPSLTTRATLAAWSLN 338
Query: 281 ----SSRVDDPGHTAPMLHSTDSVHTN-NQGAGLSMPHTGHRLTSEDTLPMGEQNAASNS 335
+ V D G+ S ++ HT NQG + + T + + D + AS +
Sbjct: 339 GNDTGNHVHDTGNHVNSSASGNASHTQANQGIPVHVTRTHNSSRAMD------EPLASTN 392
Query: 336 IPHTVSNAEARNMD 349
+ TVS E +D
Sbjct: 393 VGATVSRVEHMQID 406
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 561 DHPLMMSGDREVPFTYLASLSAKWAAMKEKSRLVQGKIKCFLTGVKGFQYKKRTTYELQA 620
+ P ++S + E PFTYLA LS KWA MK+ VQG+IKCFLTGVK FQ+K+++TYEL
Sbjct: 505 EGPSVLSTNTEKPFTYLAELSQKWAVMKDTIHFVQGRIKCFLTGVKKFQFKQQSTYELLC 564
Query: 621 YVDDGSLISEIIIDHDVVQKGIGYSPQEVTAALSSTDMKTVQN-MKETMRKFQAFLANFE 679
YVDDGSLI EI++ +DVVQK IG+S EVTAALSS+ ++ MKE +++FQ FLA+FE
Sbjct: 565 YVDDGSLICEILLHNDVVQKRIGHSSMEVTAALSSSAPTSLNAMMKEKLKRFQLFLADFE 624
Query: 680 GIIRVEFNRKSPIPLALEMNQGCPQSDAWLLMRRLK 715
GI+ VE NR S P+A+EMNQGC +DA LL+ R+K
Sbjct: 625 GIMVVEMNRSSQYPVAIEMNQGCSLTDARLLLDRIK 660
>AT5G19950.3 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=441
Length = 441
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 120 QFLFADMNFCGGGVLPANVDSMHLDVLPGPYVLQVDEILNMSCPLRGRYQKANPGVKRCL 179
+ L D+ GG LP + L GP VLQ+ + +++ + ++ G KR L
Sbjct: 61 ELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTG-KRVL 119
Query: 180 KLSMTDGVQRVFGMEYRPIQALDVCAPSGLKVSISNVKV-RRGLLMLDPETVQIKILGGL 238
K ++TDG + +EY I ++ G KV + N V R GL+ L P+ ++ +LGG
Sbjct: 120 KFALTDGKTEISALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPK--EVTVLGGY 177
Query: 239 VEQLDAARQRLVKELNKPPRGTRTKNGVLPP 269
V+ L Q + K+ R +K G PP
Sbjct: 178 VQSLTEEWQ-MKKKYASLARSQESKAGDGPP 207
>AT5G19950.2 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=443
Length = 443
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 120 QFLFADMNFCGGGVLPANVDSMHLDVLPGPYVLQVDEILNMSCPLRGRYQKANPGVKRCL 179
+ L D+ GG LP + L GP VLQ+ + +++ + ++ G KR L
Sbjct: 61 ELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTG-KRVL 119
Query: 180 KLSMTDGVQRVFGMEYRPIQALDVCAPSGLKVSISNVKV-RRGLLMLDPETVQIKILGGL 238
K ++TDG + +EY I ++ G KV + N V R GL+ L P+ ++ +LGG
Sbjct: 120 KFALTDGKTEISALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPK--EVTVLGGY 177
Query: 239 VEQLDAARQRLVKELNKPPRGTRTKNGVLPP 269
V+ L Q + K+ R +K G PP
Sbjct: 178 VQSLTEEWQ-MKKKYASLARSQESKAGDGPP 207
>AT5G19950.1 | Symbols: | Domain of unknown function (DUF1767) |
chr5:6741163-6743702 REVERSE LENGTH=443
Length = 443
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 120 QFLFADMNFCGGGVLPANVDSMHLDVLPGPYVLQVDEILNMSCPLRGRYQKANPGVKRCL 179
+ L D+ GG LP + L GP VLQ+ + +++ + ++ G KR L
Sbjct: 61 ELLNMDIKLIGGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTG-KRVL 119
Query: 180 KLSMTDGVQRVFGMEYRPIQALDVCAPSGLKVSISNVKV-RRGLLMLDPETVQIKILGGL 238
K ++TDG + +EY I ++ G KV + N V R GL+ L P+ ++ +LGG
Sbjct: 120 KFALTDGKTEISALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPK--EVTVLGGY 177
Query: 239 VEQLDAARQRLVKELNKPPRGTRTKNGVLPP 269
V+ L Q + K+ R +K G PP
Sbjct: 178 VQSLTEEWQ-MKKKYASLARSQESKAGDGPP 207