Miyakogusa Predicted Gene

Lj4g3v2883310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2883310.1 tr|C0Z2G1|C0Z2G1_ARATH AT2G36620 protein
OS=Arabidopsis thaliana GN=AT2G36620 PE=4 SV=1,60,0.17,Glucocorticoid
receptor-like (DNA-binding domain),NULL; Ribosomal_L24e,Ribosomal
protein L24e-relate,CUFF.51846.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:153...   223   5e-59
AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L...   219   6e-58
AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein ...    73   7e-14
AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein ...    73   7e-14

>AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 |
           chr2:15350548-15351819 REVERSE LENGTH=164
          Length = 164

 Score =  223 bits (568), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 115/146 (78%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCK YFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALXXXXXXXX 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAAL        
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 XXXXXXXXXXXXXXXXSQKSQGKGNV 146
                            QKSQ KGN+
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNI 146


>AT3G53020.1 | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e
           family protein | chr3:19660749-19661912 REVERSE
           LENGTH=163
          Length = 163

 Score =  219 bits (558), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/112 (92%), Positives = 107/112 (95%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRFIRSDSQVFLF+NSKCK YFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL 112
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAAL
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112


>AT2G44860.2 | Symbols:  | Ribosomal protein L24e family protein |
          chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHK 62
          ++ E C F  + IYPG GI+F+R+D+++F F  SKC   F  +  P K+ WT  +R  H 
Sbjct: 1  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63 KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQK 95
          KD+ ++      KKR R  +  Y R++   TL  I+K
Sbjct: 61 KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK 95


>AT2G44860.1 | Symbols:  | Ribosomal protein L24e family protein |
          chr2:18501034-18502128 REVERSE LENGTH=159
          Length = 159

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHK 62
          ++ E C F  + IYPG GI+F+R+D+++F F  SKC   F  +  P K+ WT  +R  H 
Sbjct: 1  MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63 KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQK 95
          KD+ ++      KKR R  +  Y R++   TL  I+K
Sbjct: 61 KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK 95