Miyakogusa Predicted Gene

Lj4g3v2882100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2882100.1 Non Chatacterized Hit- tr|K4ATG2|K4ATG2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,53.49,2e-19,
,CUFF.51815.1
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    96   6e-21
AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase fam...    70   2e-13
AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase fam...    70   3e-13
AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase fam...    70   4e-13
AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase fam...    67   2e-12

>AT5G23690.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr5:7987664-7990466 FORWARD LENGTH=527
          Length = 527

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 63/90 (70%), Gaps = 1/90 (1%)

Query: 1   MTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGR-KFLSKQDRKTDYE 59
           MT  + +S+AM+ YPQAP+SD+VFIPL +YL+   IFDC++    R  F +KQ  K +Y 
Sbjct: 437 MTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYG 496

Query: 60  SLAHGDLQEVRHMLAMVVFDTIYPLHLDRD 89
           SL  G   E+RH+ A VVFDT++PL+L ++
Sbjct: 497 SLNSGYFPEIRHVFARVVFDTVFPLNLSQE 526


>AT1G28090.1 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9795826-9798891 FORWARD LENGTH=541
          Length = 541

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAG--RKFLSKQDRKTDY 58
           +  R  ++ AM+ YPQAP SDMVF+   M  +   +F  +R +    R  +   +R+ +Y
Sbjct: 455 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 514

Query: 59  ESLAHGDLQEVRHMLAMVVFDTIYPL 84
           +SLA GD  E R + A +VFDTIYPL
Sbjct: 515 KSLALGDFHETRRVFARIVFDTIYPL 540


>AT1G28090.2 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796045-9798891 FORWARD LENGTH=505
          Length = 505

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAG--RKFLSKQDRKTDY 58
           +  R  ++ AM+ YPQAP SDMVF+   M  +   +F  +R +    R  +   +R+ +Y
Sbjct: 419 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 478

Query: 59  ESLAHGDLQEVRHMLAMVVFDTIYPL 84
           +SLA GD  E R + A +VFDTIYPL
Sbjct: 479 KSLALGDFHETRRVFARIVFDTIYPL 504


>AT1G28090.3 | Symbols:  | Polynucleotide adenylyltransferase family
           protein | chr1:9796236-9798891 FORWARD LENGTH=478
          Length = 478

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 1   MTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAG--RKFLSKQDRKTDY 58
           +  R  ++ AM+ YPQAP SDMVF+   M  +   +F  +R +    R  +   +R+ +Y
Sbjct: 392 LNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRRKGNQERDDVPSLERRINY 451

Query: 59  ESLAHGDLQEVRHMLAMVVFDTIYPL 84
           +SLA GD  E R + A +VFDTIYPL
Sbjct: 452 KSLALGDFHETRRVFARIVFDTIYPL 477


>AT3G48830.1 | Symbols:  | polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:18103272-18110216 FORWARD LENGTH=881
          Length = 881

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query: 1   MTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQDRKTDYE 59
           MT    +S+AMA YPQAP+SDMVFIPL +YL    IF+C++    + F+ KQD K + E
Sbjct: 432 MTDGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECVKENGQKGFVPKQDSKREPE 490