Miyakogusa Predicted Gene

Lj4g3v2871730.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2871730.2 Non Chatacterized Hit- tr|E1Z3R4|E1Z3R4_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,47.44,0.0000000006,no description,Rubredoxin-type fold;
Rubredoxin,Rubredoxin domain; seg,NULL; Rubredoxin-like,NULL;
R,CUFF.51796.2
         (161 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51010.1 | Symbols:  | Rubredoxin-like superfamily protein | ...   156   6e-39
AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein | chr5:5...    49   2e-06

>AT5G51010.1 | Symbols:  | Rubredoxin-like superfamily protein |
           chr5:20744615-20745344 FORWARD LENGTH=154
          Length = 154

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 87/118 (73%)

Query: 43  NLYLHPNHQQLLTSVAPRISMRVASKQSYICRDCGYIYSDRIPFEKLPDNYFCRVCGAPK 102
           ++ L  N + L  S APR SMRV+SKQ+YICRDCGYIY+DR PF+KLPDNYFC VC APK
Sbjct: 36  SMRLLGNKKSLSKSSAPRFSMRVSSKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPK 95

Query: 103 RRFKPYAPPVTKNANDIDVRKARKAELQRDQAIGRALPXXXXXXXXXXXXXYFYLNSV 160
           RRF+ Y P V+KN ND DVRKARKAELQRD+A+G+ALP             YFY+NS 
Sbjct: 96  RRFRAYMPDVSKNVNDKDVRKARKAELQRDEAVGKALPIGIAVGVLALAALYFYVNST 153


>AT5G17170.1 | Symbols: ENH1 | rubredoxin family protein |
           chr5:5649335-5650975 FORWARD LENGTH=271
          Length = 271

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 59  PRISMRVASKQ----SYICRDCGYIYSDRIPFEKLPDNYFCRVCGAPKRRFKPY 108
           PR   ++   Q    ++IC DCG+IY+    F++ PD Y C  C APK+RF  Y
Sbjct: 181 PRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKY 234