Miyakogusa Predicted Gene

Lj4g3v2860600.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2860600.2 tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA
phosphodiesterase OS=Medicago truncatula GN=MTR_8g095490 PE=4
SV=,77.02,0,seg,NULL; Tyr-DNA_phospho,Tyrosyl-DNA phosphodiesterase;
HIRAN,HIP116, Rad5p N-terminal; coiled-coil,CUFF.51784.2
         (770 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07400.1 | Symbols:  | forkhead-associated domain-containing ...   766   0.0  
AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-rela...    63   9e-10

>AT5G07400.1 | Symbols:  | forkhead-associated domain-containing
            protein / FHA domain-containing protein |
            chr5:2340814-2345321 FORWARD LENGTH=1084
          Length = 1084

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/664 (57%), Positives = 470/664 (70%), Gaps = 15/664 (2%)

Query: 59   PGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVESISRMFIATFTSDIKWFLTYCKIPF 118
            PGKNFYLNRL+ ++             PEL++PVESI ++F+ATFTSDI WFLT C  P 
Sbjct: 362  PGKNFYLNRLQYIEQSSTGCQRVVSL-PELLHPVESIQQIFLATFTSDILWFLTCCDTPR 420

Query: 119  HLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPFPETIAFGNNRKKQGIACHHP 178
            HLPVTIACHN ERCWSS PD R  VP  +YPN+ +V PPFPE IAFG +R  +GIACHHP
Sbjct: 421  HLPVTIACHNAERCWSSNPDARTAVPLPNYPNVTMVYPPFPEEIAFGKDRTNRGIACHHP 480

Query: 179  KLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRGNSVDFASLFPKIDDGEIHSD 238
            KL ++QR+DSIRV+ITSANLV +QWN VTNT+WWQDFPR    D  SLF      E +  
Sbjct: 481  KLFILQRKDSIRVIITSANLVARQWNDVTNTVWWQDFPRRADPDLLSLFGHCQR-ETNHG 539

Query: 239  SKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGIHFYRTSVLLES 298
             K DF AQLAGF ASL+ DVPSQA WI + TKY+FE + GHLVASVPGIH Y+ S L ES
Sbjct: 540  LKPDFCAQLAGFAASLLTDVPSQAHWILEFTKYNFEHSAGHLVASVPGIHSYKPSYLTES 599

Query: 299  -----FQTSPFXXXXXXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVLR 353
                   +  F            +LFR+  DS  A+LK LA ++R++   + G LE+VLR
Sbjct: 600  GCSNTIFSEEFLGSVEASVVGLSYLFRSANDSTGAQLKRLASYIRRTRENSLGMLELVLR 659

Query: 354  RNSSVPADKNAVSVLIPNPDETSEGDYVQLGFLPRDVAKWISPLWDAGFFIFSGCVCPVE 413
            RN++VPAD NAV VL+PNPD+ S  D+VQLGFLPR +AKW+SPLWD GFF F G V   E
Sbjct: 660  RNTNVPADPNAVRVLVPNPDDDSRDDFVQLGFLPRSIAKWVSPLWDIGFFKFVGYVYRDE 719

Query: 414  ALAAALGENSKKVQLILNVSEGPHFQDMPKMMQSEQIVAFCSLIASIQRCYGLWRLQEVL 473
             L AA   +++KVQL+L+V +G    DM K++Q   +VA CSLIAS+QRC G+WRLQEVL
Sbjct: 720  VLGAASCRSNEKVQLVLHVLQGVSISDMSKLIQPYHVVALCSLIASLQRCTGIWRLQEVL 779

Query: 474  NRYRWPESLESEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANE 533
             RY+WPES ES+ +Y ASSIG S  + F A FS+AAGKK+LQHFDS+ESDPEWGCW+  E
Sbjct: 780  GRYKWPESQESDFVYSASSIGGSATTGFQADFSSAAGKKALQHFDSQESDPEWGCWSNRE 839

Query: 534  ELKNPSVWIIFPTIERVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGH 593
            E + PS+ IIFPTIERVKN ++G+L SRR+LCF+E+TWQ+ +  +VL DA+P+P +R+GH
Sbjct: 840  EREAPSIKIIFPTIERVKNGHHGVLSSRRLLCFSEKTWQKWRHSNVLHDAVPNPQDRVGH 899

Query: 594  PMHTKVIRRCF--WSKGDAPSIGWVYCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVN 651
            PMH KV RR F       + S GWVY GSHNFSAAAWG+ IS        +      +V 
Sbjct: 900  PMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWGQTISRSSRNNQDQSNNAIRAVK 959

Query: 652  SGLHICNYELGIIFTFPP--IENNYCSEVQRTKLDDIILPFVVPAPKYGFRDRPATMQAM 709
              L +CNYELGI+F FPP   E + C   + +K+DDI+LPFVVPAPKYG+ D+PAT  AM
Sbjct: 960  K-LRVCNYELGIVFVFPPPHEETDSC---EGSKIDDIVLPFVVPAPKYGWSDKPATGLAM 1015

Query: 710  REAM 713
            REA 
Sbjct: 1016 REAF 1019


>AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related
           | chr5:4926300-4929307 REVERSE LENGTH=605
          Length = 605

 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 40/262 (15%)

Query: 35  NHDAALRDSVAKDSLPSCGAFHPPPGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVES 94
           N  AA +   A+D + +   F PP  K     RL  +D              ++I     
Sbjct: 113 NGRAAKKARKAEDDVEAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSINDVIE--GD 170

Query: 95  ISRMFIATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVV 154
           +    ++ +  DI W ++ C    ++P  +  H            +E++  +   N ++ 
Sbjct: 171 VVAAILSNYMVDIDWLMSACPKLANIPQVMVIHGEGD------GRQEYIQRKKPANWILH 224

Query: 155 CPPFPETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQD 214
            P  P  I+FG          HH K I +     +RVV+ +ANL+   WN  +  +W QD
Sbjct: 225 KPRLP--ISFG---------THHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQD 273

Query: 215 FPRGNSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFMASL-----VIDVPSQAQWITQ-- 267
           FP               D +      C F   L  ++  L       ++P +        
Sbjct: 274 FP-------------WKDDDKDPPKGCGFEGDLIDYLNVLKWPEFTANLPGRGNVKINAA 320

Query: 268 -LTKYDFEGATGHLVASVPGIH 288
              K+D+  AT  L+ASVPG H
Sbjct: 321 FFKKFDYSDATVRLIASVPGYH 342