Miyakogusa Predicted Gene

Lj4g3v2860540.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2860540.2 CUFF.51911.2
         (458 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47570.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   233   1e-61
AT1G47570.2 | Symbols:  | RING/U-box superfamily protein | chr1:...   222   4e-58

>AT1G47570.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:17478919-17483229 FORWARD LENGTH=466
          Length = 466

 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 149/215 (69%), Gaps = 1/215 (0%)

Query: 45  DQIWAKLVPSDSRYSDIVIWSDVTGICSEISATPSVKRCWCKIARNSDLCSATMENTSPN 104
           D  WAKLVP D+R+SDI I  +   ICSEI  +   K  WC+I +N    SAT+ N S +
Sbjct: 18  DDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNLGQSSATIHNKSSD 77

Query: 105 TILVDGAVVCNDETIAIKDGSEIISG-SDKGYVSYRFHIMSSPETCQRELKICVDVENTK 163
            ILVD AVV  D  + I  GSEI+ G  ++GY+ YRF IM +PE+  + L+I +D E+ K
Sbjct: 78  AILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRTQLLQISIDPEHAK 137

Query: 164 CSICLNIWHDVVTTGPCLHNFCNGCFSEWSRRSQAKCSIVLCPQCRAVVQFVKRNPFLRT 223
           CSICLNIWHDVVT  PCLHNFCNGCFSEW RRS+ K   VLCPQCR  VQ+V +N FL+ 
Sbjct: 138 CSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRTTVQYVGKNHFLKN 197

Query: 224 IAEDIVRADSSLRRSDEEIALLDTHASVHTNFAEG 258
           I E+I++ D++LRR  E+IA+LD+ AS+ +N   G
Sbjct: 198 IQEEILKVDAALRRPAEDIAVLDSSASIQSNLIIG 232


>AT1G47570.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:17478978-17483229 FORWARD LENGTH=453
          Length = 453

 Score =  222 bits (566), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 144/208 (69%), Gaps = 1/208 (0%)

Query: 52  VPSDSRYSDIVIWSDVTGICSEISATPSVKRCWCKIARNSDLCSATMENTSPNTILVDGA 111
           VP D+R+SDI I  +   ICSEI  +   K  WC+I +N    SAT+ N S + ILVD A
Sbjct: 12  VPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNLGQSSATIHNKSSDAILVDKA 71

Query: 112 VVCNDETIAIKDGSEIISG-SDKGYVSYRFHIMSSPETCQRELKICVDVENTKCSICLNI 170
           VV  D  + I  GSEI+ G  ++GY+ YRF IM +PE+  + L+I +D E+ KCSICLNI
Sbjct: 72  VVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRTQLLQISIDPEHAKCSICLNI 131

Query: 171 WHDVVTTGPCLHNFCNGCFSEWSRRSQAKCSIVLCPQCRAVVQFVKRNPFLRTIAEDIVR 230
           WHDVVT  PCLHNFCNGCFSEW RRS+ K   VLCPQCR  VQ+V +N FL+ I E+I++
Sbjct: 132 WHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRTTVQYVGKNHFLKNIQEEILK 191

Query: 231 ADSSLRRSDEEIALLDTHASVHTNFAEG 258
            D++LRR  E+IA+LD+ AS+ +N   G
Sbjct: 192 VDAALRRPAEDIAVLDSSASIQSNLIIG 219