Miyakogusa Predicted Gene

Lj4g3v2860540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2860540.1 Non Chatacterized Hit- tr|K2MYU2|K2MYU2_TRYCR
Uncharacterized protein OS=Trypanosoma cruzi
marinkell,28.49,0.00000000000004,SUBFAMILY NOT NAMED,NULL; UBIQUITIN
LIGASE PROTEIN CHFR,NULL,CUFF.51911.1
         (464 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47570.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   571   e-163
AT1G47570.2 | Symbols:  | RING/U-box superfamily protein | chr1:...   554   e-158

>AT1G47570.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:17478919-17483229 FORWARD LENGTH=466
          Length = 466

 Score =  571 bits (1471), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 261/464 (56%), Positives = 337/464 (72%), Gaps = 1/464 (0%)

Query: 1   MEDKGECSASASATPSDE-IWAKLVPSDSRYSDVEIRSDEKVICSEISATLSDKHSWCKI 59
           M    E   S+ + PSD+  WAKLVP D+R+SD+EIR ++ VICSEI  +  +KH WC+I
Sbjct: 1   MTTTAETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRI 60

Query: 60  VRNSDLCSATMENNSPNTILVDGAEVCNDNTIIIKDGSEIIAGPDKEGFVSYRFHLVSSP 119
            +N    SAT+ N S + ILVD A V  D  + I  GSEI+ GP+++G++ YRF ++ +P
Sbjct: 61  TKNLGQSSATIHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAP 120

Query: 120 ETCQRQLKICVDVEHAKCSICLNIWHDVVTIAPCLHNFCNGCFSEWLRRSQEKRSTVLCP 179
           E+  + L+I +D EHAKCSICLNIWHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCP
Sbjct: 121 ESRTQLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCP 180

Query: 180 QCRAVVQFVGRNHFLRTIAEDMVRADSTLSHADEEIALLDTYASVRSNLVIGPGKRSRKR 239
           QCR  VQ+VG+NHFL+ I E++++ D+ L    E+IA+LD+ AS++SNL+IG  ++ R  
Sbjct: 181 QCRTTVQYVGKNHFLKNIQEEILKVDAALRRPAEDIAVLDSSASIQSNLIIGSKRKRRLN 240

Query: 240 AQTPLDDQTDVTGHQCPQCVTEVGGFRCNHSIAHLQCQACGGMMPSRTGFDVPQYCSGCD 299
              P  ++ D    QCPQCV  +GG+RC H  AHLQC  C GMMP R    VP +C GCD
Sbjct: 241 MPAPTHEERDSLRLQCPQCVANIGGYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCD 300

Query: 300 RPFCGAYWNALGVTRSSSYPVCSPETLRPISEHSVSRIPLLAHEKNLHEQNITESCIRQM 359
           RPFCGAYW++  VT+  S PVC  ET RPISE +++RIP + HE N HEQ+IT+ CI  M
Sbjct: 301 RPFCGAYWSSENVTQGVSGPVCVRETFRPISERTITRIPFITHEMNRHEQDITQRCIAHM 360

Query: 360 GRTLQNVIAEMITKLYNGEIDRTRLMLNHVDTITSRTFVCGDCYQKLVSFLLYWFRISIP 419
            +T+ +V+AE +    N EIDR+R+ LNH +TIT+ T VC DCY KLV FLLYWFRI++P
Sbjct: 361 EKTVPDVVAEWLRLFNNREIDRSRMPLNHAETITASTHVCNDCYDKLVGFLLYWFRITLP 420

Query: 420 KRLLPPDASAREDCWYGYACRTQHRSEEHARKRNHVCRPTRGSH 463
           +  LP D +AREDCWYGYACRTQH +E+HARKRNHVCRPTRG+H
Sbjct: 421 RNHLPADVAAREDCWYGYACRTQHHNEDHARKRNHVCRPTRGNH 464


>AT1G47570.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:17478978-17483229 FORWARD LENGTH=453
          Length = 453

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 251/440 (57%), Positives = 324/440 (73%)

Query: 24  VPSDSRYSDVEIRSDEKVICSEISATLSDKHSWCKIVRNSDLCSATMENNSPNTILVDGA 83
           VP D+R+SD+EIR ++ VICSEI  +  +KH WC+I +N    SAT+ N S + ILVD A
Sbjct: 12  VPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNLGQSSATIHNKSSDAILVDKA 71

Query: 84  EVCNDNTIIIKDGSEIIAGPDKEGFVSYRFHLVSSPETCQRQLKICVDVEHAKCSICLNI 143
            V  D  + I  GSEI+ GP+++G++ YRF ++ +PE+  + L+I +D EHAKCSICLNI
Sbjct: 72  VVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRTQLLQISIDPEHAKCSICLNI 131

Query: 144 WHDVVTIAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQFVGRNHFLRTIAEDMVR 203
           WHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCPQCR  VQ+VG+NHFL+ I E++++
Sbjct: 132 WHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRTTVQYVGKNHFLKNIQEEILK 191

Query: 204 ADSTLSHADEEIALLDTYASVRSNLVIGPGKRSRKRAQTPLDDQTDVTGHQCPQCVTEVG 263
            D+ L    E+IA+LD+ AS++SNL+IG  ++ R     P  ++ D    QCPQCV  +G
Sbjct: 192 VDAALRRPAEDIAVLDSSASIQSNLIIGSKRKRRLNMPAPTHEERDSLRLQCPQCVANIG 251

Query: 264 GFRCNHSIAHLQCQACGGMMPSRTGFDVPQYCSGCDRPFCGAYWNALGVTRSSSYPVCSP 323
           G+RC H  AHLQC  C GMMP R    VP +C GCDRPFCGAYW++  VT+  S PVC  
Sbjct: 252 GYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPFCGAYWSSENVTQGVSGPVCVR 311

Query: 324 ETLRPISEHSVSRIPLLAHEKNLHEQNITESCIRQMGRTLQNVIAEMITKLYNGEIDRTR 383
           ET RPISE +++RIP + HE N HEQ+IT+ CI  M +T+ +V+AE +    N EIDR+R
Sbjct: 312 ETFRPISERTITRIPFITHEMNRHEQDITQRCIAHMEKTVPDVVAEWLRLFNNREIDRSR 371

Query: 384 LMLNHVDTITSRTFVCGDCYQKLVSFLLYWFRISIPKRLLPPDASAREDCWYGYACRTQH 443
           + LNH +TIT+ T VC DCY KLV FLLYWFRI++P+  LP D +AREDCWYGYACRTQH
Sbjct: 372 MPLNHAETITASTHVCNDCYDKLVGFLLYWFRITLPRNHLPADVAAREDCWYGYACRTQH 431

Query: 444 RSEEHARKRNHVCRPTRGSH 463
            +E+HARKRNHVCRPTRG+H
Sbjct: 432 HNEDHARKRNHVCRPTRGNH 451