Miyakogusa Predicted Gene

Lj4g3v2845120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2845120.1 Non Chatacterized Hit- tr|E1Z918|E1Z918_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,35.96,5e-19,Polyketide_cyc,Streptomyces cyclase/dehydrase;
seg,NULL; Bet v1-like,NULL,CUFF.51771.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08720.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Streptomyc...   253   1e-67
AT4G01650.1 | Symbols:  | Polyketide cyclase / dehydrase and lip...    49   3e-06
AT4G01650.2 | Symbols:  | Polyketide cyclase / dehydrase and lip...    48   7e-06

>AT5G08720.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Streptomyces
           cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis
           thaliana protein match is: Polyketide cyclase /
           dehydrase and lipid transport protein
           (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:2841536-2845335 REVERSE LENGTH=719
          Length = 719

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 154/225 (68%), Gaps = 29/225 (12%)

Query: 32  DLEAICLFVYECCFVVSGRIPCPHPGRIWLEQRGFQRAMYWHIEARVVLDLQEILNSVWD 91
           D E +  F+     V SGRIPCPHPGRIWLEQRG QRA+YWHIEARVVLDL E L+S   
Sbjct: 118 DYERLADFIPN--LVWSGRIPCPHPGRIWLEQRGLQRALYWHIEARVVLDLHECLDSPNG 175

Query: 92  RELRFSMVDGDFKKFEGKWSVKSGTRSSSTILSYEVNVIPRFNFPAIFLERIIRSDLPVN 151
           REL FSMVDGDFKKFEGKWSVKSG RS  T+LSYEVNVIPRFNFPAIFLERIIRSDLPVN
Sbjct: 176 RELHFSMVDGDFKKFEGKWSVKSGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVN 235

Query: 152 LRALAYRVER---------------NITGNQRLPLQENNLHKNSMANAPPVEKINGTLCE 196
           LRA+A + E+                I  +Q  P   N +  +S+A    V    G+L  
Sbjct: 236 LRAVARQAEKIYKDCGKPSIIEDLLGIISSQ--PAPSNGIEFDSLATERSVASSVGSLAH 293

Query: 197 SDKLLPGENKEGLASCNWGVFGKVCRLDRPCVVDEVHLRRFDGLL 241
           S++L          + NWGV+GK C+LD+PC VDEVHLRRFDGLL
Sbjct: 294 SNEL----------NNNWGVYGKACKLDKPCTVDEVHLRRFDGLL 328



 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 58  RIWLEQRGFQRAMYWHIEARVVLDLQEILNSVWDRELRFSMVDGDFKKFEGKWSVKSGTR 117
           ++ + Q G +  +Y  + AR VLDL EI     ++E+RF  V+GDF   EGKW +     
Sbjct: 379 KVRILQEGCKGLLYMVLHARAVLDLHEIR----EQEIRFEQVEGDFDSLEGKW-IFEQLG 433

Query: 118 SSSTILSYEVNVIPRFN--FPAIFLERIIRSDLPVNLRALAYRVER 161
           S  T+L Y V    R +       +E +I  DLP NL A+   +E+
Sbjct: 434 SHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSNLCAIRDYIEK 479


>AT4G01650.1 | Symbols:  | Polyketide cyclase / dehydrase and lipid
           transport protein | chr4:704578-705866 REVERSE
           LENGTH=288
          Length = 288

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)

Query: 58  RIWLEQRGFQR-AMYWHIEARVVLDLQE----ILNSVWDRELRFSMVDGDFKKFEGKWSV 112
           R+ L Q G Q  A+     A+ VLD  E    +L     RE+ F MV+GDF+ FEGKWS+
Sbjct: 159 RVRLFQMGQQNLALGLKFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSI 218

Query: 113 KS---GTRSSS---------TILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRVE 160
           +    G    +         T L+Y V+V P+   P   +E  +  ++  NL ++    +
Sbjct: 219 EQLDKGIHGEALDLQFKDFRTTLAYTVDVKPKMWLPVRLVEGRLCKEIRTNLMSIRDAAQ 278

Query: 161 RNITG 165
           + I G
Sbjct: 279 KVIEG 283


>AT4G01650.2 | Symbols:  | Polyketide cyclase / dehydrase and lipid
           transport protein | chr4:704578-706931 REVERSE
           LENGTH=211
          Length = 211

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)

Query: 58  RIWLEQRGFQR-AMYWHIEARVVLDLQE----ILNSVWDRELRFSMVDGDFKKFEGKWSV 112
           R+ L Q G Q  A+     A+ VLD  E    +L     RE+ F MV+GDF+ FEGKWS+
Sbjct: 82  RVRLFQMGQQNLALGLKFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSI 141

Query: 113 KS---GTRSSS---------TILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRVE 160
           +    G    +         T L+Y V+V P+   P   +E  +  ++  NL ++    +
Sbjct: 142 EQLDKGIHGEALDLQFKDFRTTLAYTVDVKPKMWLPVRLVEGRLCKEIRTNLMSIRDAAQ 201

Query: 161 RNITG 165
           + I G
Sbjct: 202 KVIEG 206