Miyakogusa Predicted Gene

Lj4g3v2827890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2827890.1 tr|A9SFF6|A9SFF6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.32,0.0000001,RINGv,Zinc finger, RING-CH-type;
RING/U-box,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
Th,CUFF.51740.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08750.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   337   7e-93
AT5G08750.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   337   9e-93
AT5G08750.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   337   9e-93
AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfam...   323   1e-88
AT2G37950.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    59   6e-09
AT5G05830.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    56   4e-08
AT2G34200.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    56   5e-08
AT3G06330.3 | Symbols:  | RING/U-box superfamily protein | chr3:...    54   2e-07
AT3G06330.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    52   4e-07
AT3G06330.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    50   3e-06
AT5G01070.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    49   4e-06
AT5G59000.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    49   7e-06
AT5G18760.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   7e-06

>AT5G08750.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:2852912-2854343 FORWARD LENGTH=370
          Length = 370

 Score =  337 bits (864), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 179/326 (54%), Positives = 207/326 (63%), Gaps = 15/326 (4%)

Query: 33  RLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIP-VLESKGEEVGSDGVGIAKDNRN- 90
           R S +K+  L +CRVCQCAESD+RGDAAL FLGI P V E +    G + V    D R+ 
Sbjct: 38  RYSSDKDTGLPTCRVCQCAESDRRGDAALGFLGITPPVSEPRRSNAGEETV----DQRSS 93

Query: 91  VENESRVVEFVSPDGEVFVC-KSDLELG-LSHQDTLVELGCCCKNDLALVHYACALKWFI 148
           V   S  +E +SPDGEVFVC   D+E+G   H+D L+ELGC CKNDLALVHYACALKWF+
Sbjct: 94  VVKSSGFIELISPDGEVFVCANDDIEMGAWQHRDKLLELGCSCKNDLALVHYACALKWFV 153

Query: 149 NHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRERTASGGPGPAQAHGNT---GVDP 205
           NHGST+CEICG    NIR  D NKVV +LK+Y ALRERTA G P P   + NT   G+DP
Sbjct: 154 NHGSTVCEICGKTTENIRTVDFNKVVIALKDYAALRERTADGDPNPVVVNNNTSSSGIDP 213

Query: 206 DAVAAIRRQRLSEIALWFCPHXXXXXXXXXXX----XXXXQVVSEHPLNIVIEDAGPAQN 261
           DAVAAIRRQRLSEI+LWF PH                   QV SE P+ IV  D  P ++
Sbjct: 214 DAVAAIRRQRLSEISLWFGPHCSTNNNNSSNSAAAGTASSQVTSEQPVGIVNFDILPMES 273

Query: 262 PATKWAVEXXXXXXXXXXXXXXXXXXXXPRVGKKTARGGLHILLGGVCAXXXXXXXXXXX 321
            ATKWAVE                    PRVGK+TA+ GLHILLGG+CA           
Sbjct: 274 RATKWAVEGTGILLATGLLTVTLAWLIAPRVGKRTAKSGLHILLGGLCALTVVIFFRFVV 333

Query: 322 XXXIKYGPARYWAILFIFWFLVFGIW 347
              I+YGPARYWAILF+FWFLVFGIW
Sbjct: 334 LTRIRYGPARYWAILFVFWFLVFGIW 359


>AT5G08750.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:2853066-2854343 FORWARD LENGTH=363
          Length = 363

 Score =  337 bits (863), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 179/326 (54%), Positives = 208/326 (63%), Gaps = 15/326 (4%)

Query: 33  RLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIP-VLESKGEEVGSDGVGIAKDNRN- 90
           R S +K+  L +CRVCQCAESD+RGDAAL FLGI P V E +    G + V    D R+ 
Sbjct: 31  RYSSDKDTGLPTCRVCQCAESDRRGDAALGFLGITPPVSEPRRSNAGEETV----DQRSS 86

Query: 91  VENESRVVEFVSPDGEVFVCKSD-LELG-LSHQDTLVELGCCCKNDLALVHYACALKWFI 148
           V   S  +E +SPDGEVFVC +D +E+G   H+D L+ELGC CKNDLALVHYACALKWF+
Sbjct: 87  VVKSSGFIELISPDGEVFVCANDDIEMGAWQHRDKLLELGCSCKNDLALVHYACALKWFV 146

Query: 149 NHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRERTASGGPGPAQAHGNT---GVDP 205
           NHGST+CEICG    NIR  D NKVV +LK+Y ALRERTA G P P   + NT   G+DP
Sbjct: 147 NHGSTVCEICGKTTENIRTVDFNKVVIALKDYAALRERTADGDPNPVVVNNNTSSSGIDP 206

Query: 206 DAVAAIRRQRLSEIALWFCPHXXXXXXXXXXX----XXXXQVVSEHPLNIVIEDAGPAQN 261
           DAVAAIRRQRLSEI+LWF PH                   QV SE P+ IV  D  P ++
Sbjct: 207 DAVAAIRRQRLSEISLWFGPHCSTNNNNSSNSAAAGTASSQVTSEQPVGIVNFDILPMES 266

Query: 262 PATKWAVEXXXXXXXXXXXXXXXXXXXXPRVGKKTARGGLHILLGGVCAXXXXXXXXXXX 321
            ATKWAVE                    PRVGK+TA+ GLHILLGG+CA           
Sbjct: 267 RATKWAVEGTGILLATGLLTVTLAWLIAPRVGKRTAKSGLHILLGGLCALTVVIFFRFVV 326

Query: 322 XXXIKYGPARYWAILFIFWFLVFGIW 347
              I+YGPARYWAILF+FWFLVFGIW
Sbjct: 327 LTRIRYGPARYWAILFVFWFLVFGIW 352


>AT5G08750.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:2853066-2854343 FORWARD LENGTH=363
          Length = 363

 Score =  337 bits (863), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 179/326 (54%), Positives = 208/326 (63%), Gaps = 15/326 (4%)

Query: 33  RLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIP-VLESKGEEVGSDGVGIAKDNRN- 90
           R S +K+  L +CRVCQCAESD+RGDAAL FLGI P V E +    G + V    D R+ 
Sbjct: 31  RYSSDKDTGLPTCRVCQCAESDRRGDAALGFLGITPPVSEPRRSNAGEETV----DQRSS 86

Query: 91  VENESRVVEFVSPDGEVFVCKSD-LELG-LSHQDTLVELGCCCKNDLALVHYACALKWFI 148
           V   S  +E +SPDGEVFVC +D +E+G   H+D L+ELGC CKNDLALVHYACALKWF+
Sbjct: 87  VVKSSGFIELISPDGEVFVCANDDIEMGAWQHRDKLLELGCSCKNDLALVHYACALKWFV 146

Query: 149 NHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRERTASGGPGPAQAHGNT---GVDP 205
           NHGST+CEICG    NIR  D NKVV +LK+Y ALRERTA G P P   + NT   G+DP
Sbjct: 147 NHGSTVCEICGKTTENIRTVDFNKVVIALKDYAALRERTADGDPNPVVVNNNTSSSGIDP 206

Query: 206 DAVAAIRRQRLSEIALWFCPHXXXXXXXXXXX----XXXXQVVSEHPLNIVIEDAGPAQN 261
           DAVAAIRRQRLSEI+LWF PH                   QV SE P+ IV  D  P ++
Sbjct: 207 DAVAAIRRQRLSEISLWFGPHCSTNNNNSSNSAAAGTASSQVTSEQPVGIVNFDILPMES 266

Query: 262 PATKWAVEXXXXXXXXXXXXXXXXXXXXPRVGKKTARGGLHILLGGVCAXXXXXXXXXXX 321
            ATKWAVE                    PRVGK+TA+ GLHILLGG+CA           
Sbjct: 267 RATKWAVEGTGILLATGLLTVTLAWLIAPRVGKRTAKSGLHILLGGLCALTVVIFFRFVV 326

Query: 322 XXXIKYGPARYWAILFIFWFLVFGIW 347
              I+YGPARYWAILF+FWFLVFGIW
Sbjct: 327 LTRIRYGPARYWAILFVFWFLVFGIW 352


>AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:25525160-25526446 FORWARD LENGTH=367
          Length = 367

 Score =  323 bits (828), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/368 (47%), Positives = 219/368 (59%), Gaps = 16/368 (4%)

Query: 3   GGENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE 62
           G EN        + +     V+  +L + +R S + +  L +CRVC  AESD+RGD AL 
Sbjct: 2   GKENQLETTNCGVNDHDCPPVKNEELAAEARYSTDSDSGLPTCRVCHSAESDRRGDTALG 61

Query: 63  FLGIIP-VLESKGEEVGSDGVGIAK------DNRNVEN---ESRVVEFVSPDGEVFVCKS 112
           FLGI P V E++   V      ++K       N  V++   ES  +E  SPD EVF+C +
Sbjct: 62  FLGITPPVPEARKSNVDGTADDVSKATESELKNSVVKSNGRESGFIELTSPDAEVFICTN 121

Query: 113 DLELGLS-HQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLN 171
           D+E+G+  HQD L+ELGC CKN+LALVHYACALKWF+NHGST+CEICGH A NI+ +D N
Sbjct: 122 DIEMGIQQHQDALLELGCSCKNELALVHYACALKWFLNHGSTVCEICGHPAENIKTADFN 181

Query: 172 KVVSSLKEYEALRERTASGGPGPAQAHGNTG--VDPDAVAAIRRQRLSEIALWFCPHXXX 229
           KVV +L++Y A+RERTA GG        NT   +D D VA IRRQRLSEI  WF PH   
Sbjct: 182 KVVIALRDYTAIRERTADGGDQIPVLPVNTDSTIDSDEVAVIRRQRLSEITSWFGPHSLN 241

Query: 230 XXXXXXXXXXXXQVVSEHPLNIVIEDAGPAQNPATKWAVEXXXXXXXXXXXXXXXXXXXX 289
                         + + PL +V  D  P +N ATKWAVE                    
Sbjct: 242 NNNNNNSSVA---AIPDQPLGVVNFDILPMENRATKWAVEGTGILLATGLLTVTLVWLIA 298

Query: 290 PRVGKKTARGGLHILLGGVCAXXXXXXXXXXXXXXIKYGPARYWAILFIFWFLVFGIWAS 349
           PRVGKKTAR GLHILLGG+CA              I+YGPARYWAILFIFWFLVFGIWAS
Sbjct: 299 PRVGKKTARSGLHILLGGLCALTIVIFFRFVVLTRIRYGPARYWAILFIFWFLVFGIWAS 358

Query: 350 RTHSAHTT 357
           R++++H +
Sbjct: 359 RSNASHNS 366


>AT2G37950.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:15882536-15883665 REVERSE LENGTH=207
          Length = 207

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALR 184
           +ELGC CK+DLA+ H  CA  WF   G   CEIC  +A N  +   N++V S  E   LR
Sbjct: 99  IELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARN--VGGANEMVGSTMEERELR 156

Query: 185 --ERTASGGPGPA 195
             E TA+G  G A
Sbjct: 157 NGEETAAGEGGGA 169


>AT5G05830.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:1755910-1756825 FORWARD LENGTH=204
          Length = 204

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%)

Query: 96  RVVEFVSPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTIC 155
           +VV     + +  +C   L+         +ELGC CK DLA  H  CA  WF   G+ IC
Sbjct: 68  KVVHLSQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKIC 127

Query: 156 EICGHIASNI 165
           E+CG IA N+
Sbjct: 128 EVCGSIAGNV 137


>AT2G34200.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:14441105-14441882 FORWARD LENGTH=222
          Length = 222

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRI 167
           L+E+GC CKN+L L H+ CA  WF   G+++CEICG  A N+ +
Sbjct: 126 LIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEICGCTAKNVTV 169


>AT3G06330.3 | Symbols:  | RING/U-box superfamily protein |
           chr3:1917334-1919330 FORWARD LENGTH=363
          Length = 363

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 116 LGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRIS 168
           L +  +   +++ C CK DL LVH ACA+KWF   G+  C++C  +  N+ ++
Sbjct: 222 LDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVT 274


>AT3G06330.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:1917334-1919709 FORWARD LENGTH=426
          Length = 426

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 116 LGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRIS 168
           L +  +   +++ C CK DL LVH ACA+KWF   G+  C++C  +  N+ ++
Sbjct: 222 LDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVT 274


>AT3G06330.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:1918512-1919709 FORWARD LENGTH=257
          Length = 257

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 116 LGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRIS 168
           L +  +   +++ C CK DL LVH ACA+KWF   G+  C++C  +  N+ ++
Sbjct: 53  LDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNLPVT 105


>AT5G01070.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:25094-25799 REVERSE LENGTH=206
          Length = 206

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 32/64 (50%)

Query: 102 SPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHI 161
           SP+ +  +C   LE         + LGC CK+DL  VH  CA  WF   G+  CEIC  I
Sbjct: 73  SPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSI 132

Query: 162 ASNI 165
           A N 
Sbjct: 133 AQNF 136


>AT5G59000.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:23818768-23820018 FORWARD LENGTH=231
          Length = 231

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
           ++LGC CK DL + H  CA  WF   G+  CEICG +A N+
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNV 170


>AT5G18760.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6258508-6260828 REVERSE LENGTH=411
          Length = 411

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 116 LGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVS 175
           L +  +   +++ C CK DL LVH  CA+KWF   G+ IC++C     N+ +  L   V 
Sbjct: 207 LDVCEEGNTLKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRNLPVILLR--VP 264

Query: 176 SLKEYEALRERT 187
           ++ +    RE T
Sbjct: 265 TINQLTNRRELT 276