Miyakogusa Predicted Gene

Lj4g3v2825690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2825690.2 tr|A9T6I8|A9T6I8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_192109,35.2,7e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.51729.2
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39450.1 | Symbols:  | F-box family protein | chr5:15786045-1...   110   4e-25
AT5G39460.1 | Symbols:  | F-box family protein | chr5:15788289-1...    97   9e-21
AT5G39480.1 | Symbols:  | F-box family protein | chr5:15801635-1...    79   1e-15
AT5G39490.1 | Symbols:  | F-box family protein | chr5:15805808-1...    79   2e-15

>AT5G39450.1 | Symbols:  | F-box family protein |
           chr5:15786045-15787877 FORWARD LENGTH=579
          Length = 579

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 27/178 (15%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRS--VKYID 68
           GCR++PQE+G LGI +  ++WS VFE+I  FDGSA F LHGR+  V   CL    V+ I+
Sbjct: 124 GCRIIPQEVGPLGIEEARVMWSPVFEIICGFDGSAKFFLHGRDGKVQ-CCLHPGFVRGIE 182

Query: 69  KSCNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFT 128
           KSCNVLLLEVE  +   L C    E +  V                + G+Q+PF KL F+
Sbjct: 183 KSCNVLLLEVETRREKKL-CNEIDETVLLV----------------ETGVQLPFRKLPFS 225

Query: 129 DRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVYRLGG 186
            R  LL I T  V   VP+++   LF  S+DD      + VL  +RR  L+++++ GG
Sbjct: 226 YRRNLLHIVTSTVGIPVPDLSSEKLFPTSKDD------EAVL-LERRTMLLKMHKFGG 276


>AT5G39460.1 | Symbols:  | F-box family protein |
           chr5:15788289-15790004 REVERSE LENGTH=571
          Length = 571

 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 87/176 (49%), Gaps = 30/176 (17%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQ++  L I +G + WS VFE+I  FDGS  F LHGR++   ++    V  I+KS
Sbjct: 117 GCRIIPQKVAPLWIQEGQVKWSPVFEIICGFDGSKGFFLHGRDKQGSFLYPGFVMDIEKS 176

Query: 71  CNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTDR 130
           CNVLLLEVEP    S               S  E+ R  G          PF  L F+DR
Sbjct: 177 CNVLLLEVEPRSEKS---------------SCNEIEREVGD---------PFGDLDFSDR 212

Query: 131 GMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVYRLGG 186
             LLDI T  V   V     G LF  +R  YD       +  +RR  L+++ + GG
Sbjct: 213 MNLLDIVTKHVSLRVDEPLTGNLFP-TRSKYDE-----AMMLERRNMLLKMLKFGG 262


>AT5G39480.1 | Symbols:  | F-box family protein |
           chr5:15801635-15803341 REVERSE LENGTH=568
          Length = 568

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 26/176 (14%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQ++    I +  + WS VFE+I  FDGS  F LHGR++    +    V  I+KS
Sbjct: 117 GCRIIPQKVAPSWIQEDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKS 176

Query: 71  CNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTDR 130
           CNVL L+V P +  S               S  E+ R       ++G ++PF  L F+DR
Sbjct: 177 CNVLQLDVVPRQEKS---------------SCNEIER---GASREEG-EIPFWMLAFSDR 217

Query: 131 GMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVYRLGG 186
             LL+I T  V   V    + PL   +   +   + D  +  +RR  L+++++ GG
Sbjct: 218 KNLLNIVTSHVSLHV----VEPL---NEMLFPTLKYDEAMLVERRTILLKMHKFGG 266


>AT5G39490.1 | Symbols:  | F-box family protein |
           chr5:15805808-15807508 REVERSE LENGTH=566
          Length = 566

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 26/176 (14%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCR++PQ++    I +  + WS VFE+I  FDGS  F LHGR++    +    V  I+K+
Sbjct: 116 GCRIIPQKVAPSWIQEDRVKWSPVFEIICGFDGSNGFFLHGRDKEGSCLYPGFVMGIEKN 175

Query: 71  CNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTDR 130
           C+VL LEV P +  S  C        ++ R     SR +G        ++PF  L F+DR
Sbjct: 176 CDVLQLEVVPRQEKS-SCN-------EIERG---ASRKEG--------EIPFWMLAFSDR 216

Query: 131 GMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQVYRLGG 186
             LL+I T  V   V       LF   +DD        V   +RR  L+++++ GG
Sbjct: 217 KHLLNIVTNHVGLHVVEPLNEMLFPTLKDDE-------VKLNERRTILLKMHKFGG 265