Miyakogusa Predicted Gene
- Lj4g3v2825680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2825680.1 tr|G7LEX1|G7LEX1_MEDTR DNA excision repair
protein ERCC-6-like protein OS=Medicago truncatula
GN=MTR,66.26,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; HELICASE_CTER,Helicase, C-termina,CUFF.51731.1
(1072 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 984 0.0
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 322 8e-88
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 239 6e-63
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 232 1e-60
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 224 2e-58
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 224 2e-58
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 224 2e-58
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 219 6e-57
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 219 6e-57
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 219 7e-57
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 211 2e-54
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 208 2e-53
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 207 4e-53
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 206 5e-53
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 206 7e-53
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 204 2e-52
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 5e-52
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 6e-52
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 6e-52
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 201 2e-51
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 192 8e-49
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 192 8e-49
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 192 8e-49
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 191 2e-48
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 186 6e-47
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 186 6e-47
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 185 1e-46
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 182 1e-45
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 179 1e-44
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 168 2e-41
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 164 4e-40
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 152 9e-37
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 145 1e-34
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 144 5e-34
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 139 8e-33
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 118 3e-26
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 104 4e-22
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 101 2e-21
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 98 2e-20
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 95 3e-19
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 93 1e-18
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 88 3e-17
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 87 7e-17
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 86 1e-16
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 86 1e-16
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 85 3e-16
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 84 5e-16
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 84 8e-16
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 80 7e-15
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 78 4e-14
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 76 1e-13
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 76 2e-13
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 75 2e-13
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 73 9e-13
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 70 7e-12
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 70 1e-11
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/712 (67%), Positives = 568/712 (79%), Gaps = 8/712 (1%)
Query: 367 DDGSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQIC 426
D+GSITL G +Y LPG I MLYPHQR+GLNWLWSLH GKGGILGDDMGLGKTMQIC
Sbjct: 354 DEGSITLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQIC 413
Query: 427 GFLAGLFHSRLIRRVLVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQ 486
FLAGLFHS+LI+R LVVAPKTLLPHW+KEL+ VGL++ TREY+GTS K REY+L +ILQ
Sbjct: 414 SFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQ 473
Query: 487 DKGVLLTTYDIVRNNSKSLRGHSHF-DDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLE 545
KG+LLTTYDIVRNN+K+L+G H+ D+D+ D WDYMILDEGHLIKNP+TQRAKSLLE
Sbjct: 474 GKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLE 533
Query: 546 IPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREK 605
IPS+HRIIISGTP+QNNLKELWALFNF CP LLGD WFK+ +E ILRG DKNATDRE+
Sbjct: 534 IPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQ 593
Query: 606 RVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEA 665
R+GS VAK LR+ IQP+FLRRLKSEVF D T++LS+K EI+VWLRLT+ QR LYEA
Sbjct: 594 RIGSTVAKNLREHIQPFFLRRLKSEVFGDD--GATSKLSKKDEIVVWLRLTACQRQLYEA 651
Query: 666 FLKSEIVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLA 725
FL SEIV+SAFDGSPLAA+TILKKICDH LL+TKRAAEDVLEGMDS L EEA VAE+LA
Sbjct: 652 FLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEAGVAERLA 711
Query: 726 MHIADVAETDEFKDVHDA-SCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAAR 784
MHIAD +TD+F+ +D+ SCK+SFIMSLL+NLIPEGH VLIFSQTRKMLNLIQ++L +
Sbjct: 712 MHIADNVDTDDFQTKNDSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSN 771
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNP 844
Y FLRIDGTTKA DR+K V +FQ+G APIF +ADRVIVVDPAWNP
Sbjct: 772 GYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 831
Query: 845 STDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYFTQ 904
STDNQSVDRAYRIGQ KDVIVYRLMT TVEEKIYRKQVYKGGLFKTATE KEQ RYF+Q
Sbjct: 832 STDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQ 891
Query: 905 QDLKDLFSLPKEGFDVSVTQRQLNEKH-DRLKVDDAFKAHIEFLKSLGIAGVSHHSLLFS 963
QDL++LFSLPK GFDVS TQ+QL E+H +++K+D+ ++H++FL++LGIAGVSHHSLLFS
Sbjct: 892 QDLRELFSLPKGGFDVSPTQQQLYEEHYNQIKLDEKLESHVKFLETLGIAGVSHHSLLFS 951
Query: 964 KTEPVQA-APEEDEVTRNHRPPYIGSSKPS-SHDLVVDGAEFAFNPKDVNXXXXXXXX-X 1020
KT P+QA +E+E R +G + S S D V++GA++AF PKDVN
Sbjct: 952 KTAPIQAIQKDEEEQIRRETALLLGRASASISQDTVINGADYAFKPKDVNLDKRINISPV 1011
Query: 1021 XXXXXXXXXIKDQIKRLSLTLSNTAMVSKLPDKGEKLHKRMAELNVMLTKLK 1072
IK ++ RL++ L N VS+LPD G K+ K++AEL L +K
Sbjct: 1012 DDKELSESVIKARLNRLTMLLQNKGTVSRLPDGGAKIQKQIAELTRELKDMK 1063
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 322 bits (825), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 196/584 (33%), Positives = 293/584 (50%), Gaps = 88/584 (15%)
Query: 370 SITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFL 429
S+ L G L +P I + L+ +QR G+ WLW LHC GGI+GD+MGLGKT+Q+ FL
Sbjct: 368 SVQLEGGL---NIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL 424
Query: 430 AGLFHSRLIRRVLVVAPKTLLPHWIKELS------------------------------- 458
L S++ + +++ P TLL W +E
Sbjct: 425 GSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESD 484
Query: 459 --VVGLAEKTREYFGTSMKLREYELQYILQ-DKGVLLTTYDIVRNNSKSLRGHSHFDDDE 515
+ E + K + L +L + G+L+TTY+ +R L+G + +
Sbjct: 485 YDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLR-----LQGEKLLNIE- 538
Query: 516 SDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCP 575
W Y +LDEGH I+NP++ ++ + HRII++G P+QN L ELW+LF+F P
Sbjct: 539 -----WGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFP 593
Query: 576 ELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQD 635
LG F+ +F PI G NA+ + A LRD I PY LRR+K++V
Sbjct: 594 GKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV---- 649
Query: 636 DKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGS--PLAAITILKKICDH 693
A L++K E +++ LT QR Y AFL S V FDG+ L I +++KIC+H
Sbjct: 650 ----NAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNH 705
Query: 694 ALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFKDVHDASCKISFIMSL 753
D+LE S P+ N + S K+ + +
Sbjct: 706 P---------DLLEREHSHQNPDYGNP---------------------ERSGKMKVVAEV 735
Query: 754 LDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGA 813
L +GH VL+FSQT++ML++++ L A Y + R+DG T R+ ++++F +
Sbjct: 736 LKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDM 795
Query: 814 PIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGT 873
+F A+RVI+ DP WNPS D Q+ +RA+RIGQKKDV VYRL+T GT
Sbjct: 796 FVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGT 855
Query: 874 VEEKIYRKQVYKGGLFKTATEQKEQTRYFTQQDLKDLFSLPKEG 917
+EEK+Y +Q+YK L + +Q R+F +D+KDLF L +G
Sbjct: 856 IEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDG 899
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 180/642 (28%), Positives = 307/642 (47%), Gaps = 85/642 (13%)
Query: 359 ELDHFEAVDDGSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMG 418
E D+ + ++ IG + +P +I L HQR+G+ ++++L+ GGILGDDMG
Sbjct: 108 EFDYSGPYEPLMLSSIGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMG 167
Query: 419 LGKTMQICGFLAGLF-------HSRLIRR----VLVVAPKTLLPHWIKELSVVGLAEKTR 467
LGKT+Q FLA ++ S L+ VL++ P +++ +W E S K
Sbjct: 168 LGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVS 227
Query: 468 EYFGTSMKLREYELQYILQDKGV--LLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMI 525
Y G++ R+ L+ L+ +GV L+T++D R L G W+ +I
Sbjct: 228 VYHGSN---RDMILEK-LKARGVEVLVTSFDTFRIQGPVLSG-----------INWEIVI 272
Query: 526 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFK 585
DE H +KN ++ ++ LEI + RI ++GT +QN + EL+ LF + P LG + F+
Sbjct: 273 ADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFR 332
Query: 586 EKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQ 645
+ ++ P+ G A +R ++ + L ++ Y LRR K E +
Sbjct: 333 DFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGH-------LMMG 385
Query: 646 KQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFD-------GSPLAAITILKKI-------- 690
K++ +V+ +++ QR +Y+ ++ + + GSPL ++I
Sbjct: 386 KEDNVVFCQMSQLQRRVYQRMIQLPEIQCLVNKDNPCACGSPLKQSECCRRIVPDGTIWS 445
Query: 691 ---------CDHA-------LLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAET 734
CD LM + + LE + K +E +K A ++ V T
Sbjct: 446 YLHRDNHDGCDSCPFCLVLPCLMKLQQISNHLELIKPNPK-DEPEKQKKDAEFVSTVFGT 504
Query: 735 D-----------EFKDVHDAS-C-KISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENL 781
D F D+ D C K+ + L+ + I +G +L+FS + +ML+++++ L
Sbjct: 505 DIDLLGGISASKSFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFL 564
Query: 782 AARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPA 841
+ Y F R+DG+T + R +V+DF +F A+RV++ DP
Sbjct: 565 IRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPN 624
Query: 842 WNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRY 901
WNPS D Q+ DR++R GQK+ V+V+RL++ G++EE +Y +QVYK L A K +TRY
Sbjct: 625 WNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETRY 684
Query: 902 FTQQDLKDLFSLPKEGFDVSVTQRQLNEKHDRLKVDDAFKAH 943
F + ++D E F +S R L+ D+L D + H
Sbjct: 685 F--EGVQDCKEFQGELFGISNLFRDLS---DKLFTSDIVELH 721
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 179/575 (31%), Positives = 278/575 (48%), Gaps = 74/575 (12%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLW----SLHCLGK--GGILGDDMGLGKTMQICGFL--- 429
T + + K L PHQR+G+ +++ LH G IL DDMGLGKT+Q L
Sbjct: 169 TIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTL 228
Query: 430 --AGLFHSRLIRRVLVVAPKTLLPHWIKEL--------SVVGLAEKTREYFGT---SMKL 476
G + ++++ ++V P +L+ +W E+ ++ L E TR+ + S
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTR 288
Query: 477 REYELQYILQDKGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPS 536
LQ VL+ +Y+ R +S S F ES D +I DE H +KN
Sbjct: 289 PRSALQ-------VLIISYETFRMHS------SKFCQSES----CDLLICDEAHRLKNDQ 331
Query: 537 TQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGN 596
T ++L + R+++SGTP+QN+L+E +A+ NF P LGD F+ +E+PI+ G
Sbjct: 332 TLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGR 391
Query: 597 DKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLT 656
+ AT+ EK + + + EL ++ + LRR + + N L K +V ++T
Sbjct: 392 EPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH--------LPPKIIEVVCCKMT 443
Query: 657 STQRHLYEAFLKSEIVVSAFDGSP-----LAAITILKKICDHALLM--TKRAAEDVLEGM 709
+ Q LY F+ S+ + A + LA IT LKK+C+H L+ T ++ G
Sbjct: 444 TLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGF 503
Query: 710 DS--ELKPEEANVAEKLAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHN-VLI 766
++ E P E A D A + S K+ + LL NL + + +++
Sbjct: 504 ENCLEFFPAEMFSGRSGAWTGGDGAWV-------ELSGKMHVLSRLLANLRRKTDDRIVL 556
Query: 767 FSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPI-FXXXXXXXXX 825
S + L+L + R Y FLR+DG+T S R K+VN D F
Sbjct: 557 VSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGC 616
Query: 826 XXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYK 885
A+R+++ DP WNP+ D Q+ R +R GQKK V VYR ++ GT+EEK+Y++Q+ K
Sbjct: 617 GLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSK 676
Query: 886 GGLFKTATEQKEQTRYFTQQ-------DLKDLFSL 913
GL K Q EQT T+Q DL+DLFS
Sbjct: 677 EGLQKVI--QHEQTDNSTRQGNLLSTEDLRDLFSF 709
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 177/573 (30%), Positives = 274/573 (47%), Gaps = 72/573 (12%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLW----SLHCLGK--GGILGDDMGLGKTMQICGFL--- 429
T + + K L PHQR+G+ +++ LH G IL DDMGLGKT+Q L
Sbjct: 169 TIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTL 228
Query: 430 --AGLFHSRLIRRVLVVAPKTLLPHWIKEL--------SVVGLAEKTREYFGT---SMKL 476
G + ++++ ++V P +L+ +W E+ ++ L E TR+ + S
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTR 288
Query: 477 REYELQYILQDKGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPS 536
LQ VL+ +Y+ R +S S F ES D +I DE H +KN
Sbjct: 289 PRSALQ-------VLIISYETFRMHS------SKFCQSES----CDLLICDEAHRLKNDQ 331
Query: 537 TQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGN 596
T ++L + R+++SGTP+QN+L+E +A+ NF P LGD F+ +E+PI+ G
Sbjct: 332 TLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGR 391
Query: 597 DKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLT 656
+ AT+ EK + + + EL ++ + LRR + + N L K +V ++T
Sbjct: 392 EPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH--------LPPKIIEVVCCKMT 443
Query: 657 STQRHLYEAF---LKSEIVVSAFDGSPLAAITILKKICDHALLM--TKRAAEDVLEGMDS 711
+ Q LK + +A LA IT LKK+C+H L+ T ++ G ++
Sbjct: 444 TLQTTYNGCLCMQLKRALADNAKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFEN 503
Query: 712 --ELKPEEANVAEKLAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHN-VLIFS 768
E P E A D A + S K+ + LL NL + + +++ S
Sbjct: 504 CLEFFPAEMFSGRSGAWTGGDGAWV-------ELSGKMHVLSRLLANLRRKTDDRIVLVS 556
Query: 769 QTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPI-FXXXXXXXXXXX 827
+ L+L + R Y FLR+DG+T S R K+VN D F
Sbjct: 557 NYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGL 616
Query: 828 XXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGG 887
A+R+++ DP WNP+ D Q+ R +R GQKK V VYR ++ GT+EEK+Y++Q+ K G
Sbjct: 617 NLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEG 676
Query: 888 LFKTATEQKEQTRYFTQQ-------DLKDLFSL 913
L K Q EQT T+Q DL+DLFS
Sbjct: 677 LQKVI--QHEQTDNSTRQGNLLSTEDLRDLFSF 707
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/573 (29%), Positives = 271/573 (47%), Gaps = 68/573 (11%)
Query: 380 YKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRL-- 437
YKL + L +Q++G+NWL L GIL DDMGLGKT+Q +A R
Sbjct: 1472 YKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGS 1531
Query: 438 -----IRRVLVVAPKTLLPHWIKELS-VVGLAE-KTREYFGTS---MKLREYELQYILQD 487
+ ++V P TL+ HW E+ + L+ +Y G++ + LRE +
Sbjct: 1532 TDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQ-----FNN 1586
Query: 488 KGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIP 547
V++T+YD+VR + L S W+Y ILDEGH+IKN ++ ++ ++
Sbjct: 1587 HNVIITSYDVVRKDVDYLTQFS-----------WNYCILDEGHIIKNAKSKITAAVKQLK 1635
Query: 548 SAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRV 607
+ HR+I+SGTP+QNN+ ELW+LF+F P LG + F+ + P+L D + ++
Sbjct: 1636 AQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEA 1695
Query: 608 GSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAF- 666
G + L ++ P+ LRR K EV ++L +K + L+ Q LYE F
Sbjct: 1696 GVLAMEALHKQVMPFLLRRTKEEVL--------SDLPEKIIQDRYCDLSPVQLKLYEQFS 1747
Query: 667 ---LKSEI-VVSAFDGSP----------------LAAITILKKICDHALLMTKRAAEDVL 706
K EI + DGS A+ L K+C H LL+ + V
Sbjct: 1748 GSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL---GDKVT 1804
Query: 707 EGMDSELKPEEANVAEKLAMHIADVAETDEFKDVHDA--SCKISFIMSLLDNLIPEG-HN 763
E + S+L N + + V + + + + C I S D + G H
Sbjct: 1805 EPVASDLAA-MINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHR 1863
Query: 764 VLIFSQTRKMLNLIQENL---AARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
VLIF+Q + +L++I+++L +S ++R+DG+ R +IV F +
Sbjct: 1864 VLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTT 1923
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
AD ++ ++ WNP D+Q++DRA+R+GQK+ V V+RL+ GT+EEK+
Sbjct: 1924 HVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMS 1983
Query: 881 KQVYKGGLFKTATEQKEQTRYFTQQD-LKDLFS 912
Q +K + T + + D L DLF+
Sbjct: 1984 LQKFKVSVANTVINAENASMKTMNTDQLLDLFA 2016
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/573 (29%), Positives = 271/573 (47%), Gaps = 68/573 (11%)
Query: 380 YKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRL-- 437
YKL + L +Q++G+NWL L GIL DDMGLGKT+Q +A R
Sbjct: 1441 YKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGS 1500
Query: 438 -----IRRVLVVAPKTLLPHWIKELS-VVGLAE-KTREYFGTS---MKLREYELQYILQD 487
+ ++V P TL+ HW E+ + L+ +Y G++ + LRE +
Sbjct: 1501 TDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQ-----FNN 1555
Query: 488 KGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIP 547
V++T+YD+VR + L S W+Y ILDEGH+IKN ++ ++ ++
Sbjct: 1556 HNVIITSYDVVRKDVDYLTQFS-----------WNYCILDEGHIIKNAKSKITAAVKQLK 1604
Query: 548 SAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRV 607
+ HR+I+SGTP+QNN+ ELW+LF+F P LG + F+ + P+L D + ++
Sbjct: 1605 AQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEA 1664
Query: 608 GSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAF- 666
G + L ++ P+ LRR K EV ++L +K + L+ Q LYE F
Sbjct: 1665 GVLAMEALHKQVMPFLLRRTKEEVL--------SDLPEKIIQDRYCDLSPVQLKLYEQFS 1716
Query: 667 ---LKSEI-VVSAFDGSP----------------LAAITILKKICDHALLMTKRAAEDVL 706
K EI + DGS A+ L K+C H LL+ + V
Sbjct: 1717 GSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL---GDKVT 1773
Query: 707 EGMDSELKPEEANVAEKLAMHIADVAETDEFKDVHDA--SCKISFIMSLLDNLIPEG-HN 763
E + S+L N + + V + + + + C I S D + G H
Sbjct: 1774 EPVASDLAA-MINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHR 1832
Query: 764 VLIFSQTRKMLNLIQENL---AARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
VLIF+Q + +L++I+++L +S ++R+DG+ R +IV F +
Sbjct: 1833 VLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTT 1892
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
AD ++ ++ WNP D+Q++DRA+R+GQK+ V V+RL+ GT+EEK+
Sbjct: 1893 HVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMS 1952
Query: 881 KQVYKGGLFKTATEQKEQTRYFTQQD-LKDLFS 912
Q +K + T + + D L DLF+
Sbjct: 1953 LQKFKVSVANTVINAENASMKTMNTDQLLDLFA 1985
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 219 bits (559), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 252/535 (47%), Gaps = 62/535 (11%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRR-VLVV 444
+G L +Q +GL WL SL+ GIL D+MGLGKT+Q+ + L ++ R LVV
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 445 APKTLLPHWIKELSVVGLAEKTREYFGTSMKLRE-YELQYILQDKGVLLTTYDIVRNNSK 503
P ++LP W E++ + Y GT + R+ ++ Q + Q VLLTTY+ + N
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNK-- 867
Query: 504 SLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNL 563
D + W Y+I+DEGH IKN S + L S+HR++++GTPLQNNL
Sbjct: 868 -------HDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNL 920
Query: 564 KELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSH--VAKELRDRIQP 621
+ELWAL NF P + ++ F + F P + +A + + + L ++P
Sbjct: 921 EELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRP 980
Query: 622 YFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLY---EAFLKSEIVVSAFDG 678
+ LRRLK +V N EL +K E ++ ++ Q+ L E L S + +A
Sbjct: 981 FVLRRLKHKVEN--------ELPEKIERLIRCEASAYQKLLMKRVEDNLGS--IGNAKSR 1030
Query: 679 SPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFK 738
+ ++ L+ IC+H L S+L EE N + H
Sbjct: 1031 AVHNSVMELRNICNHPYL--------------SQLHSEEVN--NIIPKHF--------LP 1066
Query: 739 DVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKAS 798
+ K+ + +L L H VL FS ++L+++++ L + Y +LR+DG T
Sbjct: 1067 PIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGG 1126
Query: 799 DRIKIVNDFQDGIGAP--IFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
DR +++ F G+P IF AD VI+ D WNP D Q+ RA+R
Sbjct: 1127 DRGALIDGFNKS-GSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHR 1185
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYK---------GGLFKTATEQKEQTRYF 902
IGQKKDV+V R T +VEE++ +K G F T +++ Y
Sbjct: 1186 IGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYL 1240
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 219 bits (559), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 252/535 (47%), Gaps = 62/535 (11%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRR-VLVV 444
+G L +Q +GL WL SL+ GIL D+MGLGKT+Q+ + L ++ R LVV
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 445 APKTLLPHWIKELSVVGLAEKTREYFGTSMKLRE-YELQYILQDKGVLLTTYDIVRNNSK 503
P ++LP W E++ + Y GT + R+ ++ Q + Q VLLTTY+ + N
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNK-- 867
Query: 504 SLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNL 563
D + W Y+I+DEGH IKN S + L S+HR++++GTPLQNNL
Sbjct: 868 -------HDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNL 920
Query: 564 KELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSH--VAKELRDRIQP 621
+ELWAL NF P + ++ F + F P + +A + + + L ++P
Sbjct: 921 EELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRP 980
Query: 622 YFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLY---EAFLKSEIVVSAFDG 678
+ LRRLK +V N EL +K E ++ ++ Q+ L E L S + +A
Sbjct: 981 FVLRRLKHKVEN--------ELPEKIERLIRCEASAYQKLLMKRVEDNLGS--IGNAKSR 1030
Query: 679 SPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFK 738
+ ++ L+ IC+H L S+L EE N + H
Sbjct: 1031 AVHNSVMELRNICNHPYL--------------SQLHSEEVN--NIIPKHF--------LP 1066
Query: 739 DVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKAS 798
+ K+ + +L L H VL FS ++L+++++ L + Y +LR+DG T
Sbjct: 1067 PIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGG 1126
Query: 799 DRIKIVNDFQDGIGAP--IFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
DR +++ F G+P IF AD VI+ D WNP D Q+ RA+R
Sbjct: 1127 DRGALIDGFNKS-GSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHR 1185
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYK---------GGLFKTATEQKEQTRYF 902
IGQKKDV+V R T +VEE++ +K G F T +++ Y
Sbjct: 1186 IGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYL 1240
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 252/535 (47%), Gaps = 62/535 (11%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRR-VLVV 444
+G L +Q +GL WL SL+ GIL D+MGLGKT+Q+ + L ++ R LVV
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 445 APKTLLPHWIKELSVVGLAEKTREYFGTSMKLRE-YELQYILQDKGVLLTTYDIVRNNSK 503
P ++LP W E++ + Y GT + R+ ++ Q + Q VLLTTY+ + N
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNK-- 867
Query: 504 SLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNL 563
D + W Y+I+DEGH IKN S + L S+HR++++GTPLQNNL
Sbjct: 868 -------HDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNL 920
Query: 564 KELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSH--VAKELRDRIQP 621
+ELWAL NF P + ++ F + F P + +A + + + L ++P
Sbjct: 921 EELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRP 980
Query: 622 YFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLY---EAFLKSEIVVSAFDG 678
+ LRRLK +V N EL +K E ++ ++ Q+ L E L S + +A
Sbjct: 981 FVLRRLKHKVEN--------ELPEKIERLIRCEASAYQKLLMKRVEDNLGS--IGNAKSR 1030
Query: 679 SPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFK 738
+ ++ L+ IC+H L S+L EE N + H
Sbjct: 1031 AVHNSVMELRNICNHPYL--------------SQLHSEEVN--NIIPKHF--------LP 1066
Query: 739 DVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKAS 798
+ K+ + +L L H VL FS ++L+++++ L + Y +LR+DG T
Sbjct: 1067 PIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGG 1126
Query: 799 DRIKIVNDFQDGIGAP--IFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
DR +++ F G+P IF AD VI+ D WNP D Q+ RA+R
Sbjct: 1127 DRGALIDGFNKS-GSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHR 1185
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYK---------GGLFKTATEQKEQTRYF 902
IGQKKDV+V R T +VEE++ +K G F T +++ Y
Sbjct: 1186 IGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYL 1240
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/526 (30%), Positives = 251/526 (47%), Gaps = 74/526 (14%)
Query: 387 GKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIRRVLVVA 445
G L +Q +GL W+ SL+ GIL D+MGLGKT+Q +A L S+ L L++A
Sbjct: 383 GGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILA 442
Query: 446 PKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTYDIVRNNSKSL 505
PK +LP+W E ++ + Y G+ K E + VL+T YD++ + L
Sbjct: 443 PKAVLPNWENEFALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDKAFL 502
Query: 506 RGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPLQNNLK 564
+ W+YMI+DEGH +KN AK+L R++++GTP+QN+L+
Sbjct: 503 K-----------KIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQ 551
Query: 565 ELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFL 624
ELW+L NF P + F+E F +P + TD E+ + + L I+P+ L
Sbjct: 552 ELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELL---IINRLHHVIRPFLL 608
Query: 625 RRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLK-SEIVVSAFDG--SPL 681
RR KSEV L K ++I+ +++ Q+ Y+ + + + +G L
Sbjct: 609 RRKKSEV--------EKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSL 660
Query: 682 AAITI-LKKICDHALLMTKRAAEDVLEGMDSEL--KPEEANVAEKLAMHIADVAETDEFK 738
+T+ L+K C+H L G D + KPE
Sbjct: 661 QNLTMQLRKCCNHPYLFV---------GADYNMCKKPE---------------------- 689
Query: 739 DVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKAS 798
+ AS K + LL L GH +L+FSQ ++++L++ L+ Y +LR+DG+TK
Sbjct: 690 -IVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTD 748
Query: 799 DRIKIVNDFQDGIGAP--IFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
R ++ F + +P +F AD +I+ D WNP D Q+ DRA+R
Sbjct: 749 QRGILLKQFNEP-DSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHR 807
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRK---------QVYKGGLFKTAT 893
IGQKK+V V+ L++ G++EE I + +V + GLF T +
Sbjct: 808 IGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTS 853
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 159/554 (28%), Positives = 259/554 (46%), Gaps = 68/554 (12%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVL 442
P G L +Q G+ WL SL G GIL D MGLGKT+Q GFL+ L + L L
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYL 254
Query: 443 VVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKG----VLLTTYDIV 498
V+AP + L +W E++ + Y G + E +++ + G +++T+Y++
Sbjct: 255 VIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVA 314
Query: 499 RNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP 558
N++K + H W Y+++DEGH +KN + + L + ++++++GTP
Sbjct: 315 MNDAKRILRHY----------PWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTP 364
Query: 559 LQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDR 618
LQNNL ELW+L NF P++ + F+ F+ N+ + EKR V+K L
Sbjct: 365 LQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK-LHGI 423
Query: 619 IQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQR----HLYEAFLKSEIVVS 674
++P+ LRR+K +V L +K+EII++ +T Q+ HL L++ + +
Sbjct: 424 LRPFILRRMKCDV--------ELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGEN 475
Query: 675 AFDGSPLAA-----ITILKKICDHALLMTKRAAEDVLEGM--DSELKPEEANVAEKLAMH 727
A G + L+K C+H D+L+G S L P
Sbjct: 476 AIRGQGWKGKLNNLVIQLRKNCNHP---------DLLQGQIDGSYLYP------------ 514
Query: 728 IADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYD 787
+++ K + LL L H VLIFSQ K+L+++ + + ++
Sbjct: 515 --------PVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFE 566
Query: 788 FLRIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPST 846
RIDG+ K +R + + DF D IF AD I+ D WNP
Sbjct: 567 VCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQM 626
Query: 847 DNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQ----KEQTRYF 902
D Q++DR +RIGQ K V VYRL T ++E ++ ++ K L Q +E+ +
Sbjct: 627 DLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSS 686
Query: 903 TQQDLKDLFSLPKE 916
T + +D+ +L KE
Sbjct: 687 TPLEEEDILALLKE 700
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 166/562 (29%), Positives = 266/562 (47%), Gaps = 79/562 (14%)
Query: 387 GKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRR-VLVVA 445
G L +Q +GL W+ SL GIL D+MGLGKT+Q +A L ++ + L+VA
Sbjct: 400 GGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVA 459
Query: 446 PKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-GVLLTTYDIVRNNSKS 504
PK +LP+W+ E + + Y G + + + + K VL+T YD++ +
Sbjct: 460 PKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDLIMRDKAF 519
Query: 505 LRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLE-IPSAHRIIISGTPLQNNL 563
L+ W YMI+DEGH +KN + AK+LL R++++GTP+QN+L
Sbjct: 520 LK-----------KIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSL 568
Query: 564 KELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYF 623
+ELW+L NF P + + F+E F +P + + TD E+ + H L I+P+
Sbjct: 569 QELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIH---RLHHVIRPFI 625
Query: 624 LRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFL---KSEIVVSAFDGSP 680
LRR K EV L K ++I+ +++ Q+ Y+ + + +
Sbjct: 626 LRRKKDEV--------EKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKS 677
Query: 681 LAAITI-LKKICDHALLMTKRAAEDVLEGMDSEL--KPEEANVAEKLAMHIADVAETDEF 737
L +T+ L+K C+H L G D + KPE
Sbjct: 678 LQNLTMQLRKCCNHPYLFV---------GGDYNMWKKPE--------------------- 707
Query: 738 KDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKA 797
+ AS K + LL L GH +L+FSQ +++++++ L Y +LR+DGTTK
Sbjct: 708 --IVRASGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKT 765
Query: 798 SDRIKIVNDFQDGIGAP--IFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAY 855
R ++ F + +P +F AD VI+ D WNP D Q+ DRA+
Sbjct: 766 DQRGLLLKQFNEP-DSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 824
Query: 856 RIGQKKDVIVYRLMTCGTVEEKIYRK---------QVYKGGLFKTATEQKEQTRYFTQQD 906
RIGQKK+V V+ L++ G+VEE I + +V + GLF T + +++ +
Sbjct: 825 RIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIM 884
Query: 907 LKDLFSLPKEGFDVSVTQRQLN 928
K SL G DV ++R++N
Sbjct: 885 RKGTSSL---GTDVP-SEREIN 902
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 206 bits (525), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 158/526 (30%), Positives = 240/526 (45%), Gaps = 65/526 (12%)
Query: 369 GSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGF 428
G I G P I L +Q GLNWL L+ G GIL D+MGLGKT+Q
Sbjct: 173 GGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL 232
Query: 429 LAGLFHSRLIRRV-LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQD 487
LA L R I +VVAPK+ L +W+ E+ + ++ G + R + ++
Sbjct: 233 LAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAG 292
Query: 488 K-GVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEI 546
K + +T++++ +LR S W Y+I+DE H IKN ++ +K++
Sbjct: 293 KFDICVTSFEMAIKEKTTLRRFS-----------WRYIIIDEAHRIKNENSLLSKTMRLF 341
Query: 547 PSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKR 606
+ +R++I+GTPLQNNL ELWAL NF PE+ + F E F+ I ND+
Sbjct: 342 STNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ--ISGENDQ-------- 391
Query: 607 VGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAF 666
V ++L ++P+ LRRLKS+V L K+E I+ + ++ Q+ Y+A
Sbjct: 392 --QEVVQQLHKVLRPFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKAL 441
Query: 667 LKSEIVVSAFDGSPLAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEK 723
L+ ++ V G + I L+K C+H L + E
Sbjct: 442 LQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYL----------------FQGAEPGPPYT 485
Query: 724 LAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAA 783
H+ A K+ + LL L VLIFSQ ++L+++++ L
Sbjct: 486 TGDHLVTNA------------GKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMY 533
Query: 784 RSYDFLRIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
R Y + RIDG T +R + + G +F AD VI+ D W
Sbjct: 534 RGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 593
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGL 888
NP D Q+ DRA+RIGQKK+V V+R T +E K+ + K L
Sbjct: 594 NPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLAL 639
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 158/526 (30%), Positives = 240/526 (45%), Gaps = 65/526 (12%)
Query: 369 GSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGF 428
G I G P I L +Q GLNWL L+ G GIL D+MGLGKT+Q
Sbjct: 173 GGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL 232
Query: 429 LAGLFHSRLIRRV-LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQD 487
LA L R I +VVAPK+ L +W+ E+ + ++ G + R + ++
Sbjct: 233 LAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAG 292
Query: 488 K-GVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEI 546
K + +T++++ +LR S W Y+I+DE H IKN ++ +K++
Sbjct: 293 KFDICVTSFEMAIKEKTTLRRFS-----------WRYIIIDEAHRIKNENSLLSKTMRLF 341
Query: 547 PSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKR 606
+ +R++I+GTPLQNNL ELWAL NF PE+ + F E F+ I ND+
Sbjct: 342 STNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ--ISGENDQ-------- 391
Query: 607 VGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAF 666
V ++L ++P+ LRRLKS+V L K+E I+ + ++ Q+ Y+A
Sbjct: 392 --QEVVQQLHKVLRPFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKAL 441
Query: 667 LKSEIVVSAFDGSPLAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEK 723
L+ ++ V G + I L+K C+H L + E
Sbjct: 442 LQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYL----------------FQGAEPGPPYT 485
Query: 724 LAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAA 783
H+ A K+ + LL L VLIFSQ ++L+++++ L
Sbjct: 486 TGDHLVTNA------------GKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMY 533
Query: 784 RSYDFLRIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
R Y + RIDG T +R + + G +F AD VI+ D W
Sbjct: 534 RGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 593
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGL 888
NP D Q+ DRA+RIGQKK+V V+R T +E K+ + K L
Sbjct: 594 NPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLAL 639
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 160/521 (30%), Positives = 245/521 (47%), Gaps = 92/521 (17%)
Query: 387 GKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGL-FHSRLIRRVLVVA 445
G L+ HQ + LNWL K IL D+MGLGKT+ FL+ L F + R LV+
Sbjct: 686 GGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLV 745
Query: 446 PKTLLPHWIKELSVVGLAEKTREYFGTSMK---LREYELQYILQDKG-----------VL 491
P + +P+W+ E S+ EY G++ +R+YE + G VL
Sbjct: 746 PLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEW-HAKNSTGTTKKPTSYKFNVL 804
Query: 492 LTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 551
LTTY++V +S LRG W+ +++DEGH +KN ++ L HR
Sbjct: 805 LTTYEMVLADSSHLRGVP-----------WEVLVVDEGHRLKNSESKLFSLLNTFSFQHR 853
Query: 552 IIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHV 611
++++GTPLQNN+ E++ L NF P F+E+F + T EK
Sbjct: 854 VLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFH---------DLTSAEK------ 898
Query: 612 AKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKS-- 669
+EL+ + P+ LRRLK K+ + K E +V + LTS Q Y A L
Sbjct: 899 VEELKKLVAPHMLRRLK--------KDAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNY 950
Query: 670 EIVVSAFDG----SPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLA 725
+I+ + G S L + L+K+C+H L+ +PE ++
Sbjct: 951 QILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPG-------------TEPESGSL----- 992
Query: 726 MHIADVAETDEFKDVHD----ASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQE-- 779
EF +HD AS K++ + S+L L EGH VLIFSQ K+L+++++
Sbjct: 993 ----------EF--LHDMRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYL 1040
Query: 780 NLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVD 839
N+ F R+DG+ +DR + F +F AD VI+ D
Sbjct: 1041 NIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYD 1100
Query: 840 PAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
+NP D Q+++RA+RIGQ K ++VYRL+ +VEE+I +
Sbjct: 1101 SDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQ 1141
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 203 bits (517), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 236/512 (46%), Gaps = 65/512 (12%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRV- 441
P I + +Q GLNWL L+ G GIL D+MGLGKT+Q LA L R I
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 442 LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-GVLLTTYDIVRN 500
+VVAPK+ L +W+ E+ + ++ G + R ++ K + +T++++
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIK 301
Query: 501 NSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQ 560
+LR S W Y+I+DE H IKN ++ +K++ + +R++I+GTPLQ
Sbjct: 302 EKTALRRFS-----------WRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 350
Query: 561 NNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQ 620
NNL ELWAL NF PE+ + F E F+ I ND+ V ++L ++
Sbjct: 351 NNLHELWALLNFLLPEIFSSAETFDEWFQ--ISGENDQ----------QEVVQQLHKVLR 398
Query: 621 PYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSP 680
P+ LRRLKS+V L K+E I+ + ++ Q+ Y+A L+ ++ G
Sbjct: 399 PFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER 450
Query: 681 LAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEF 737
+ I L+K C+H L + E H+ A
Sbjct: 451 KRLLNIAMQLRKCCNHPYL----------------FQGAEPGPPYTTGDHLITNA----- 489
Query: 738 KDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKA 797
K+ + LL L VLIFSQ ++L+++++ L R Y + RIDG T
Sbjct: 490 -------GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGG 542
Query: 798 SDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
+R + + G +F AD VI+ D WNP D Q+ DRA+R
Sbjct: 543 DERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHR 602
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGL 888
IGQKK+V V+R T +EEK+ + K L
Sbjct: 603 IGQKKEVQVFRFCTESAIEEKVIERAYKKLAL 634
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 236/512 (46%), Gaps = 65/512 (12%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRV- 441
P I + +Q GLNWL L+ G GIL D+MGLGKT+Q LA L R I
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 442 LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-GVLLTTYDIVRN 500
+VVAPK+ L +W+ E+ + ++ G + R ++ K + +T++++
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIK 301
Query: 501 NSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQ 560
+LR S W Y+I+DE H IKN ++ +K++ + +R++I+GTPLQ
Sbjct: 302 EKTALRRFS-----------WRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 350
Query: 561 NNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQ 620
NNL ELWAL NF PE+ + F E F+ I ND+ V ++L ++
Sbjct: 351 NNLHELWALLNFLLPEIFSSAETFDEWFQ--ISGENDQ----------QEVVQQLHKVLR 398
Query: 621 PYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSP 680
P+ LRRLKS+V L K+E I+ + ++ Q+ Y+A L+ ++ G
Sbjct: 399 PFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER 450
Query: 681 LAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEF 737
+ I L+K C+H L + E H+ A
Sbjct: 451 KRLLNIAMQLRKCCNHPYL----------------FQGAEPGPPYTTGDHLITNA----- 489
Query: 738 KDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKA 797
K+ + LL L VLIFSQ ++L+++++ L R Y + RIDG T
Sbjct: 490 -------GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGG 542
Query: 798 SDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
+R + + G +F AD VI+ D WNP D Q+ DRA+R
Sbjct: 543 DERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHR 602
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGL 888
IGQKK+V V+R T +EEK+ + K L
Sbjct: 603 IGQKKEVQVFRFCTESAIEEKVIERAYKKLAL 634
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 236/512 (46%), Gaps = 65/512 (12%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRV- 441
P I + +Q GLNWL L+ G GIL D+MGLGKT+Q LA L R I
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 442 LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-GVLLTTYDIVRN 500
+VVAPK+ L +W+ E+ + ++ G + R ++ K + +T++++
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIK 301
Query: 501 NSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQ 560
+LR S W Y+I+DE H IKN ++ +K++ + +R++I+GTPLQ
Sbjct: 302 EKTALRRFS-----------WRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 350
Query: 561 NNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQ 620
NNL ELWAL NF PE+ + F E F+ I ND+ V ++L ++
Sbjct: 351 NNLHELWALLNFLLPEIFSSAETFDEWFQ--ISGENDQ----------QEVVQQLHKVLR 398
Query: 621 PYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSP 680
P+ LRRLKS+V L K+E I+ + ++ Q+ Y+A L+ ++ G
Sbjct: 399 PFLLRRLKSDV--------EKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGER 450
Query: 681 LAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEF 737
+ I L+K C+H L + E H+ A
Sbjct: 451 KRLLNIAMQLRKCCNHPYL----------------FQGAEPGPPYTTGDHLITNA----- 489
Query: 738 KDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKA 797
K+ + LL L VLIFSQ ++L+++++ L R Y + RIDG T
Sbjct: 490 -------GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGG 542
Query: 798 SDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYR 856
+R + + G +F AD VI+ D WNP D Q+ DRA+R
Sbjct: 543 DERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHR 602
Query: 857 IGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGL 888
IGQKK+V V+R T +EEK+ + K L
Sbjct: 603 IGQKKEVQVFRFCTESAIEEKVIERAYKKLAL 634
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 161/561 (28%), Positives = 270/561 (48%), Gaps = 97/561 (17%)
Query: 383 PGTIGKMLYPHQRDGLNWL---WSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIR 439
P + +L+P+Q +GLN+L WS IL D+MGLGKT+Q LA LF LI
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIALLASLFEENLIP 322
Query: 440 RVLVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMK---LREYEL--------------- 481
LV+AP + L +W +E + YFGT+ +RE+E
Sbjct: 323 H-LVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSG 381
Query: 482 QYILQDK------GVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNP 535
Q + K VLLT+Y+++ +S L+ W+ MI+DEGH +KN
Sbjct: 382 QISSESKQKRIKFDVLLTSYEMINLDSAVLK-----------PIKWECMIVDEGHRLKNK 430
Query: 536 STQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRG 595
++ SL + S HRI+++GTPLQNNL EL+ L +F G + F+E+F+
Sbjct: 431 DSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK------ 484
Query: 596 NDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRL 655
D N ++ R+ +A P+ LRR+K +V ++ K+E+I+ + L
Sbjct: 485 -DINQEEQISRLHKMLA--------PHLLRRVKKDVMK--------DMPPKKELILRVDL 527
Query: 656 TSTQRHLYEA-FLKSEIVVSAFDGSPLAAITI---LKKICDHALLMTKRAAEDVLEGMDS 711
+S Q+ Y+A F ++ V++ G+ ++ I L+K+C H + LEG++
Sbjct: 528 SSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYM---------LEGVEP 578
Query: 712 ELKPEEANVAEKLAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTR 771
+H A+ A FK + ++ K+ + ++ L +GH VLI++Q +
Sbjct: 579 -------------VIHDANEA----FKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQ 621
Query: 772 KMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQ-DGIGAPIFXXXXXXXXXXXXXX 830
ML+L+++ + + + RIDG ++R ++ F F
Sbjct: 622 HMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLA 681
Query: 831 RADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFK 890
AD VI+ D WNP D Q++ RA+R+GQ V++YRL+ GT+EE++ + K + +
Sbjct: 682 TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMM-QLTKKKMVLE 740
Query: 891 TATEQKEQTRYFTQQDLKDLF 911
K +T+ Q++L D+
Sbjct: 741 HLVVGKLKTQNINQEELDDII 761
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 165/611 (27%), Positives = 278/611 (45%), Gaps = 101/611 (16%)
Query: 381 KLPGTIGKMLYPHQRDGLNWLWS--LHCL--------GKGGILGDDMGLGKTMQICGFLA 430
++P +I L HQ G+ ++W + + G G IL MGLGKT Q+ FL
Sbjct: 710 RVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLY 769
Query: 431 GLFHS--RLIRRVLVVAPKTLLPHW-----------IKELSVVGLAEKTREYFGTSMKLR 477
++ L+V P +L +W +K L + L + +RE R
Sbjct: 770 TAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRE--------R 821
Query: 478 EYELQYILQDKG-VLLTTYDIVRNNS-----KSLRGHSHFDDDESDDPTWDYMILDEGHL 531
++L + KG V L Y RN S K L + D P D ++ DE H+
Sbjct: 822 RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGP--DILVCDEAHI 879
Query: 532 IKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESP 591
IKN ++L ++ RI ++G+PLQNNL E + + +F LG + F+ +F++P
Sbjct: 880 IKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNP 939
Query: 592 ILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIV 651
I G N+T + ++ + + L ++++ F++R+ V +D L K ++
Sbjct: 940 IENGQHMNSTAEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKD-------LPPKTVFVI 991
Query: 652 WLRLTSTQRHLYEAFLKSEIVVSAFDGSP--------LAAITILKKICDHALLMTKRAAE 703
++L+ QR LY+ FL+ + DG AA +L +I +H + R +E
Sbjct: 992 SVKLSPLQRILYQRFLE---LYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQLR-SE 1047
Query: 704 DVLEGMDSELK--PEEANVAEKLAMHI-------------------------ADVAETDE 736
D G + P++ + E + ++ D+ + +
Sbjct: 1048 DSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQKDWWVDLLQKNN 1107
Query: 737 FKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLA------------AR 784
+K V D S K+ ++ +L G L+FSQ+ L+LI+ L+ +
Sbjct: 1108 YK-VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKK 1166
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQ--DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
D+ RIDG T++S+R K+V+ F D A+RVI+VD +W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYF 902
NP+ D Q++ RA+R GQKK V YRLM GT+EEKIY++QV K GL ++++ R
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTI 1286
Query: 903 TQQDLKDLFSL 913
+++++ LF
Sbjct: 1287 SKEEMLHLFEF 1297
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 165/611 (27%), Positives = 278/611 (45%), Gaps = 101/611 (16%)
Query: 381 KLPGTIGKMLYPHQRDGLNWLWS--LHCL--------GKGGILGDDMGLGKTMQICGFLA 430
++P +I L HQ G+ ++W + + G G IL MGLGKT Q+ FL
Sbjct: 710 RVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLY 769
Query: 431 GLFHS--RLIRRVLVVAPKTLLPHW-----------IKELSVVGLAEKTREYFGTSMKLR 477
++ L+V P +L +W +K L + L + +RE R
Sbjct: 770 TAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRE--------R 821
Query: 478 EYELQYILQDKG-VLLTTYDIVRNNS-----KSLRGHSHFDDDESDDPTWDYMILDEGHL 531
++L + KG V L Y RN S K L + D P D ++ DE H+
Sbjct: 822 RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGP--DILVCDEAHI 879
Query: 532 IKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESP 591
IKN ++L ++ RI ++G+PLQNNL E + + +F LG + F+ +F++P
Sbjct: 880 IKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNP 939
Query: 592 ILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIV 651
I G N+T + ++ + + L ++++ F++R+ V +D L K ++
Sbjct: 940 IENGQHMNSTAEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKD-------LPPKTVFVI 991
Query: 652 WLRLTSTQRHLYEAFLKSEIVVSAFDGSP--------LAAITILKKICDHALLMTKRAAE 703
++L+ QR LY+ FL+ + DG AA +L +I +H + R +E
Sbjct: 992 SVKLSPLQRILYQRFLE---LYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQLR-SE 1047
Query: 704 DVLEGMDSELK--PEEANVAEKLAMHI-------------------------ADVAETDE 736
D G + P++ + E + ++ D+ + +
Sbjct: 1048 DSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQKDWWVDLLQKNN 1107
Query: 737 FKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLA------------AR 784
+K V D S K+ ++ +L G L+FSQ+ L+LI+ L+ +
Sbjct: 1108 YK-VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKK 1166
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQ--DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
D+ RIDG T++S+R K+V+ F D A+RVI+VD +W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYF 902
NP+ D Q++ RA+R GQKK V YRLM GT+EEKIY++QV K GL ++++ R
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTI 1286
Query: 903 TQQDLKDLFSL 913
+++++ LF
Sbjct: 1287 SKEEMLHLFEF 1297
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 165/611 (27%), Positives = 278/611 (45%), Gaps = 101/611 (16%)
Query: 381 KLPGTIGKMLYPHQRDGLNWLWS--LHCL--------GKGGILGDDMGLGKTMQICGFLA 430
++P +I L HQ G+ ++W + + G G IL MGLGKT Q+ FL
Sbjct: 710 RVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLY 769
Query: 431 GLFHS--RLIRRVLVVAPKTLLPHW-----------IKELSVVGLAEKTREYFGTSMKLR 477
++ L+V P +L +W +K L + L + +RE R
Sbjct: 770 TAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRE--------R 821
Query: 478 EYELQYILQDKG-VLLTTYDIVRNNS-----KSLRGHSHFDDDESDDPTWDYMILDEGHL 531
++L + KG V L Y RN S K L + D P D ++ DE H+
Sbjct: 822 RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGP--DILVCDEAHI 879
Query: 532 IKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESP 591
IKN ++L ++ RI ++G+PLQNNL E + + +F LG + F+ +F++P
Sbjct: 880 IKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNP 939
Query: 592 ILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIV 651
I G N+T + ++ + + L ++++ F++R+ V +D L K ++
Sbjct: 940 IENGQHMNSTAEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKD-------LPPKTVFVI 991
Query: 652 WLRLTSTQRHLYEAFLKSEIVVSAFDGSP--------LAAITILKKICDHALLMTKRAAE 703
++L+ QR LY+ FL+ + DG AA +L +I +H + R +E
Sbjct: 992 SVKLSPLQRILYQRFLE---LYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQLR-SE 1047
Query: 704 DVLEGMDSELK--PEEANVAEKLAMHI-------------------------ADVAETDE 736
D G + P++ + E + ++ D+ + +
Sbjct: 1048 DSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQKDWWVDLLQKNN 1107
Query: 737 FKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLA------------AR 784
+K V D S K+ ++ +L G L+FSQ+ L+LI+ L+ +
Sbjct: 1108 YK-VSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKK 1166
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQ--DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
D+ RIDG T++S+R K+V+ F D A+RVI+VD +W
Sbjct: 1167 GKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSW 1226
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYF 902
NP+ D Q++ RA+R GQKK V YRLM GT+EEKIY++QV K GL ++++ R
Sbjct: 1227 NPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTI 1286
Query: 903 TQQDLKDLFSL 913
+++++ LF
Sbjct: 1287 SKEEMLHLFEF 1297
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 155/515 (30%), Positives = 234/515 (45%), Gaps = 75/515 (14%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILG-DDMGLGKTMQICGFLAGL-FHSRLIRRVLV 443
+ L PHQ +G++WL + LG +L D MGLGKT+Q FL+ L F L LV
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 444 VAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKG------VLLTTYDI 497
+ P ++ W+ E++ + Y G K +++ + D G VLLTTYDI
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGD--KYCRLDMRKSMYDHGHFLPFDVLLTTYDI 164
Query: 498 VRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLE---IPSAHRIII 554
+ D D W Y I+DE +KNP++ LLE IP R++I
Sbjct: 165 -----------ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIP--RRLLI 211
Query: 555 SGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKE 614
+GTP+QNNL ELWAL +FC P + G F F+ G+ + ++ ++ K
Sbjct: 212 TGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKET---GDGLDVSNDKE-----TYKS 263
Query: 615 LRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEI--- 671
L+ + + LRR KS + ++ L E+ V + L S Q+ +Y + L+ E+
Sbjct: 264 LKFILGAFMLRRTKSLLI----ESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGL 319
Query: 672 ---VVSAFDGSPLAAITI-LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMH 727
+ + L I I L+K C H L ++PE E L
Sbjct: 320 LELSSGGSNHTSLQNIVIQLRKACSHPYLFPG-------------IEPEPFEEGEHLV-- 364
Query: 728 IADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYD 787
AS K+ + LL L GH VL+FSQ L+++Q+ + R Y
Sbjct: 365 --------------QASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYS 410
Query: 788 FLRIDGTTKASDRIKIVNDFQ-DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPST 846
+ R+DG+ +A +R + +F DG A +F AD VI + WNP
Sbjct: 411 YERLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV 470
Query: 847 DNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRK 881
D Q++ RA+RIGQ V+ L+T +VEE I R+
Sbjct: 471 DKQALQRAHRIGQISHVLSINLVTEHSVEEVILRR 505
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 186 bits (473), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 238/506 (47%), Gaps = 75/506 (14%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVL 442
P + L+ +Q +GLN+L IL D+MGLGKT+Q FLA LF L L
Sbjct: 218 PEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENLSPH-L 276
Query: 443 VVAPKTLLPHWIKELSVVGLAEKTREYFGTSMK---LREYELQYILQDKG---VLLTTYD 496
VVAP + + +W +E + Y G S + E+E + K VLLTTY+
Sbjct: 277 VVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYE 336
Query: 497 IVRNNSKSLRGHSHFDDDESDDPT-WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
+V L P W MI+DEGH +KN ++ SL + S H ++++
Sbjct: 337 MVHPGISVL------------SPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLT 384
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKEL 615
GTPLQNNL EL+AL +F + G EKF+ D N ++ R+ +A
Sbjct: 385 GTPLQNNLNELFALMHFLDADKFGS----LEKFQ-------DINKEEQISRLHQMLA--- 430
Query: 616 RDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKS--EIVV 673
P+ LRRLK +V ++ K+E+I+ + ++S Q+ +Y+A + + +++
Sbjct: 431 -----PHLLRRLKKDVLKD-------KVPPKKELILRVDMSSQQKEVYKAVITNNYQVLT 478
Query: 674 SAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAE 733
D + L+++C H L+ D E + E+AN A
Sbjct: 479 KKRDAKISNVLMKLRQVCSHPYLLP-----------DFEPRFEDANEA------------ 515
Query: 734 TDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDG 793
F + +AS K+ + ++ L +GH VLI++Q + L L+++ +++++ RIDG
Sbjct: 516 ---FTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDG 572
Query: 794 TTKASDRIKIVNDFQ-DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVD 852
+R ++ F + F AD VI+ D WNP D Q++
Sbjct: 573 KISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMA 632
Query: 853 RAYRIGQKKDVIVYRLMTCGTVEEKI 878
R +R+GQ V++YRL+ GTVEE++
Sbjct: 633 RVHRLGQTNKVMIYRLIHKGTVEERM 658
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 186 bits (473), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 238/506 (47%), Gaps = 75/506 (14%)
Query: 383 PGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVL 442
P + L+ +Q +GLN+L IL D+MGLGKT+Q FLA LF L L
Sbjct: 177 PEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENLSPH-L 235
Query: 443 VVAPKTLLPHWIKELSVVGLAEKTREYFGTSMK---LREYELQYILQDKG---VLLTTYD 496
VVAP + + +W +E + Y G S + E+E + K VLLTTY+
Sbjct: 236 VVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYE 295
Query: 497 IVRNNSKSLRGHSHFDDDESDDPT-WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
+V L P W MI+DEGH +KN ++ SL + S H ++++
Sbjct: 296 MVHPGISVL------------SPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLT 343
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKEL 615
GTPLQNNL EL+AL +F + G EKF+ D N ++ R+ +A
Sbjct: 344 GTPLQNNLNELFALMHFLDADKFGS----LEKFQ-------DINKEEQISRLHQMLA--- 389
Query: 616 RDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKS--EIVV 673
P+ LRRLK +V ++ K+E+I+ + ++S Q+ +Y+A + + +++
Sbjct: 390 -----PHLLRRLKKDVLKD-------KVPPKKELILRVDMSSQQKEVYKAVITNNYQVLT 437
Query: 674 SAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAE 733
D + L+++C H L+ D E + E+AN A
Sbjct: 438 KKRDAKISNVLMKLRQVCSHPYLLP-----------DFEPRFEDANEA------------ 474
Query: 734 TDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDG 793
F + +AS K+ + ++ L +GH VLI++Q + L L+++ +++++ RIDG
Sbjct: 475 ---FTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDG 531
Query: 794 TTKASDRIKIVNDFQ-DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVD 852
+R ++ F + F AD VI+ D WNP D Q++
Sbjct: 532 KISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMA 591
Query: 853 RAYRIGQKKDVIVYRLMTCGTVEEKI 878
R +R+GQ V++YRL+ GTVEE++
Sbjct: 592 RVHRLGQTNKVMIYRLIHKGTVEERM 617
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 159/531 (29%), Positives = 236/531 (44%), Gaps = 88/531 (16%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILG-DDMGLGKTMQICGFLAGL-FHSRLIRRVLV 443
+ L PHQ +G++WL + LG +L D MGLGKT+Q FL+ L F L LV
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 444 VAPKTLLPHWIKELSVVGLAEKTREYFG---TSMKLREYELQYILQD-KG------VLLT 493
+ P ++ W+ E++ + Y G + +R+ ++ + KG VLLT
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLT 166
Query: 494 TYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLE---IPSAH 550
TYDI + D D W Y I+DE +KNP++ LLE IP
Sbjct: 167 TYDI-----------ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIP--R 213
Query: 551 RIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPI--LRGNDKNATDREKRVG 608
R++I+GTP+QNNL ELWAL +FC P + G F F+ L G D + D+E
Sbjct: 214 RLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDV-SNDKE---- 268
Query: 609 SHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLK 668
K L+ + + LRR KS + ++ L E+ V + L S Q+ +Y + L+
Sbjct: 269 --TYKSLKFILGAFMLRRTKSLLI----ESGNLVLPPLTELTVMVPLVSLQKKIYTSILR 322
Query: 669 SEI------VVSAFDGSPLAAITI-LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVA 721
E+ + + L I I L+K C H L ++PE
Sbjct: 323 KELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPG-------------IEPEPFEEG 369
Query: 722 EKLAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENL 781
E L AS K+ + LL L GH VL+FSQ L+++Q+ +
Sbjct: 370 EHLV----------------QASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFM 413
Query: 782 AARSYDFLRIDGTTKASDRIKIVNDFQ-----------DGIGAPIFXXXXXXXXXXXXXX 830
R Y + R+DG+ +A +R + +F DG A +F
Sbjct: 414 ELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLV 473
Query: 831 RADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRK 881
AD VI + WNP D Q++ RA+RIGQ V+ L+T +VEE I R+
Sbjct: 474 AADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRR 524
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 160/605 (26%), Positives = 272/605 (44%), Gaps = 110/605 (18%)
Query: 381 KLPGTIGKMLYPHQRDGLNWLWS--LHCL--------GKGGILGDDMGLGKTMQICGFLA 430
++P +I L HQ G+ ++W + + G G IL MGLGKT Q+ FL
Sbjct: 710 RVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLY 769
Query: 431 GLFHS--RLIRRVLVVAPKTLLPHW-----------IKELSVVGLAEKTREYFGTSMKLR 477
++ L+V P +L +W +K L + L + +R F
Sbjct: 770 TAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRYKFF------ 823
Query: 478 EYELQYILQDKGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPST 537
YE + GV + R +LR D P D ++ DE H+IKN
Sbjct: 824 -YERNFW----GV--KDLNAARGICNALR----------DGP--DILVCDEAHIIKNTKA 864
Query: 538 QRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGND 597
++L ++ RI ++G+PLQNNL E + + +F LG + F+ +F++PI G
Sbjct: 865 DTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQH 924
Query: 598 KNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTS 657
N+T + ++ + + L ++++ F++R+ V +D L K ++ ++L+
Sbjct: 925 MNSTAEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKD-------LPPKTVFVISVKLSP 976
Query: 658 TQRHLYEAFLKSEIVVSAFDGSP--------LAAITILKKICDHALLMTKRAAEDVLEGM 709
QR LY+ FL+ + DG AA +L +I +H + R +ED G
Sbjct: 977 LQRILYQRFLE---LYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQLR-SEDSKNGR 1032
Query: 710 DSELK--PEEANVAEKLAMHI-------------------------ADVAETDEFKDVHD 742
+ P++ + E + ++ D+ + + +K V D
Sbjct: 1033 RGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQKDWWVDLLQKNNYK-VSD 1091
Query: 743 ASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLA------------ARSYDFLR 790
S K+ ++ +L G L+FSQ+ L+LI+ L+ + D+ R
Sbjct: 1092 FSGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYR 1151
Query: 791 IDGTTKASDRIKIVNDFQ--DGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDN 848
IDG T++S+R K+V+ F D A+RVI+VD +WNP+ D
Sbjct: 1152 IDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDL 1211
Query: 849 QSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYFTQQDLK 908
Q++ RA+R GQKK V YRLM GT+EEKIY++QV K GL ++++ R +++++
Sbjct: 1212 QAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEML 1271
Query: 909 DLFSL 913
LF
Sbjct: 1272 HLFEF 1276
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 150/513 (29%), Positives = 235/513 (45%), Gaps = 80/513 (15%)
Query: 386 IGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRR-VLVV 444
IG L +Q +GLN+L + IL D+MGLGKT+Q L L +++ I LVV
Sbjct: 621 IGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVV 680
Query: 445 APKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK---------GVLLTTY 495
P + L +W KE Y GT RE QY ++ LLTTY
Sbjct: 681 VPLSTLANWAKEFRKWLPGMNIIVYVGTRAS-REVCQQYEFYNEKKVGRPIKFNALLTTY 739
Query: 496 DIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
++V + L W Y+++DE H +KN Q +LLE + ++++I+
Sbjct: 740 EVVLKDKAVL-----------SKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLIT 788
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKEL 615
GTPLQN+++ELWAL +F P + F E + KN + + +++ EL
Sbjct: 789 GTPLQNSVEELWALLHFLDPGKFKNKDEFVENY---------KNLSSFNESELANLHLEL 839
Query: 616 RDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEI--VV 673
R P+ LRR+ +V L K E I+ + ++ Q+ Y+ L+ +
Sbjct: 840 R----PHILRRVIKDV--------EKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLN 887
Query: 674 SAFDGSPLAAITI---LKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIAD 730
G+ ++ + I LKK C+H L E A+ + D
Sbjct: 888 KGVRGNQVSLLNIVVELKKCCNHPFLF------------------ESADHG-----YGGD 924
Query: 731 VAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLR 790
+ + + + +S K+ + LL L H VLIFSQ +ML+++ E L+ R + F R
Sbjct: 925 INDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQR 984
Query: 791 IDGTTKASDRIKIVNDFQDGIGAP-----IFXXXXXXXXXXXXXXRADRVIVVDPAWNPS 845
+DG+TKA R + ++ F AP F AD V++ D WNP
Sbjct: 985 LDGSTKAELRQQAMDHF----NAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQ 1040
Query: 846 TDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKI 878
D Q++ RA+RIGQ++ V +YR +T +VEE+I
Sbjct: 1041 NDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEI 1073
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 173/337 (51%), Gaps = 39/337 (11%)
Query: 378 FTY-------KLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLA 430
FTY KLP + L +Q GL+WL +++ GIL D+MGLGKT+ LA
Sbjct: 517 FTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLA 576
Query: 431 GLFHSRLIRRV-LVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQ--YILQD 487
L + I L+V P +++ +W E A K YFG S K R+ + Q L
Sbjct: 577 HLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFG-SAKERKLKRQGWMKLNS 635
Query: 488 KGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIP 547
V +TTY +V +SK + W Y+ILDE HLIKN +QR ++LL
Sbjct: 636 FHVCITTYRLVIQDSKMFKRKK-----------WKYLILDEAHLIKNWKSQRWQTLLNFN 684
Query: 548 SAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRV 607
S RI+++GTPLQN+L ELW+L +F P + ++ FK+ F +PI + ++++
Sbjct: 685 SKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPI-----AGMVEGQEKI 739
Query: 608 GSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFL 667
V L + ++P+ LRRLK +V Q L K E +++ RL+ QR+LYE F+
Sbjct: 740 NKEVIDRLHNVLRPFLLRRLKRDVEKQ--------LPSKHEHVIFCRLSKRQRNLYEDFI 791
Query: 668 KS-EIVVSAFDGSPLAAITI---LKKICDHALLMTKR 700
S E + GS I+I L+K+C+H L R
Sbjct: 792 ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGR 828
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Query: 746 KISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVN 805
K+ + LL L GH LIF+Q KML++++ + Y ++R+DG+T +R ++
Sbjct: 1076 KLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQ 1135
Query: 806 DFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIV 865
F +F AD VI D WNP+ D Q+ DR +RIGQ ++V +
Sbjct: 1136 RFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1195
Query: 866 YRLMTCGTVEEKIYRKQVYKGGLFKTATEQKE-QTRYFTQQDLKDLFS 912
YRL++ T+EE I +K K L + E T +F + D +LFS
Sbjct: 1196 YRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFS 1243
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 159/555 (28%), Positives = 254/555 (45%), Gaps = 76/555 (13%)
Query: 389 MLYPHQRDGLNWLWSLHCLG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIRRV---LVV 444
+L P+Q G+N+L L+ G +G IL D+MGLGKT+Q +L L SRL LVV
Sbjct: 212 ILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLL--SRLNNDPGPHLVV 269
Query: 445 APKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-----GVLLTTYDIVR 499
P ++L +W +EL + +Y G + EL + + VLL Y +
Sbjct: 270 CPASVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFE 329
Query: 500 NNSKSLRGHSHFDDDESDDPTWDY--MILDEGHLIKNPSTQRAKSLLEIP--SAHRIIIS 555
+S+ + DD W + +++DE H +K+ ++ R K+L+ + + R++++
Sbjct: 330 RHSEQQK------DDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLT 383
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKEL 615
GTPLQN+L ELW+L F P++ +K +L D R K +
Sbjct: 384 GTPLQNDLHELWSLLEFMLPDIFTTENVDLKK----LLNAEDTELITRMKSI-------- 431
Query: 616 RDRIQPYFLRRLKSEVFNQ----DDKNKTAELSQKQE-----IIVWLRLTSTQRHLYEAF 666
+ P+ LRRLKS+V Q + + + +KQE I R S R +
Sbjct: 432 ---LGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVK--- 485
Query: 667 LKSEIVVSAFDGSPLAAI----TILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAE 722
L S+ + S P I T +KI +H LL+ + +++ + + +L P A E
Sbjct: 486 LSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKLHPIGAFGFE 545
Query: 723 -KLAMHIADVAETDEFK--------DVHDA-----------SCKISFIMSLLDNLIPEGH 762
L I +V ++F+ V+D S K + LL ++ GH
Sbjct: 546 CSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGH 605
Query: 763 NVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXX 822
VLIFSQ ML++++ L + R+DG+T+ +DR IV+ F +
Sbjct: 606 RVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRA 665
Query: 823 XXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIY--- 879
AD VI+ D +NP D Q+ DR +RIGQ K V ++RL+T TV+E IY
Sbjct: 666 GGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIA 725
Query: 880 -RKQVYKGGLFKTAT 893
RK V + ++
Sbjct: 726 KRKLVLDAAVLESGV 740
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 165/347 (47%), Gaps = 43/347 (12%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLI 438
T + P L +Q GL WL + + G GIL D+MGLGKT+Q FLA L + I
Sbjct: 575 TVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 634
Query: 439 RR-VLVVAPKTLLPHWIKELSVVGLAEKTREYFG-----TSMKLREYELQYILQDKG--V 490
LVVAP ++L +W E+S KT Y+G T ++ + +D G +
Sbjct: 635 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHI 694
Query: 491 LLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAH 550
L+T+Y ++ + K R W YM+LDE IK+ S+ R K+LL +
Sbjct: 695 LITSYQLLVTDEKYFR-----------RVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRN 743
Query: 551 RIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSH 610
R++++GTP+QNN+ ELWAL +F P L ++ F E F I +N + + H
Sbjct: 744 RLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI-----ENHAEHGGTLNEH 798
Query: 611 VAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSE 670
L ++P+ LRR+K +V +EL+ K E+ V +L+S Q+ Y+A
Sbjct: 799 QLNRLHAILKPFMLRRVKKDV--------VSELTTKTEVTVHCKLSSRQQAFYQAIKNKI 850
Query: 671 IVVSAFDGS----------PLAAITI-LKKICDHALLMTKRAAEDVL 706
+ FD + L I I L+K+C+H L + L
Sbjct: 851 SLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELFERNEGSSYL 897
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 79/143 (55%)
Query: 744 SCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKI 803
S K+ + LL L H VL+F+Q KMLN++++ + R Y +LR+DG++ DR +
Sbjct: 1205 SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDM 1264
Query: 804 VNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 863
V DFQ +F AD VI + WNP+ D Q++DRA+R+GQ KDV
Sbjct: 1265 VRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1324
Query: 864 IVYRLMTCGTVEEKIYRKQVYKG 886
VYRL+ TVEEKI + K
Sbjct: 1325 TVYRLICKETVEEKILHRASQKN 1347
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 217/504 (43%), Gaps = 81/504 (16%)
Query: 390 LYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIRRVLVVAPKT 448
L +Q GL W+ SL+ GIL D+MGLGKT+Q+ +A L + L++ P
Sbjct: 981 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1040
Query: 449 LLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGH 508
+L +W EL + Y GT + + Q + VL+TTY+ +
Sbjct: 1041 VLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTYEFI---------- 1090
Query: 509 SHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWA 568
+D + W Y+I+DE +K+ + A+ L R++++GTPLQN+LKELW+
Sbjct: 1091 -MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1149
Query: 569 LFNFCCPELLGDNKWFKEKFESPILR-GNDKNATD----REKRVGSHVAKELRDRIQPYF 623
L N P++ + K F + F P + G N D EK+V V L ++P+
Sbjct: 1150 LLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKV--IVIHRLHQILEPFM 1207
Query: 624 LRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSPLAA 683
LRR +V L K +++ R+++ Q +Y+ + + D L A
Sbjct: 1208 LRRRVEDV--------EGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRA 1259
Query: 684 -----------------ITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAM 726
L+K C+H LL
Sbjct: 1260 QKNPIYQAKIYRTLNNRCMELRKACNHPLL------------------------------ 1289
Query: 727 HIADVAETDEF-KDVHDASC-KISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAAR 784
+ ++F KD SC K+ + +L L GH VL+FS K+L++++E L R
Sbjct: 1290 ---NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1346
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWN 843
+ RIDGTT DR + DF D IF AD V++ DP N
Sbjct: 1347 RLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPN 1406
Query: 844 PSTDNQSVDRAYRIGQKKDV-IVY 866
P + Q+V RA+RIGQ ++V ++Y
Sbjct: 1407 PKNEEQAVARAHRIGQTREVKVIY 1430
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 140/505 (27%), Positives = 218/505 (43%), Gaps = 82/505 (16%)
Query: 390 LYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIRRVLVVAPKT 448
L +Q GL W+ SL+ GIL D+MGLGKT+Q+ +A L + L++ P
Sbjct: 981 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1040
Query: 449 LLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDK-GVLLTTYDIVRNNSKSLRG 507
+L +W EL + Y GT + + Q + K VL+TTY+ +
Sbjct: 1041 VLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFI--------- 1091
Query: 508 HSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELW 567
+D + W Y+I+DE +K+ + A+ L R++++GTPLQN+LKELW
Sbjct: 1092 --MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1149
Query: 568 ALFNFCCPELLGDNKWFKEKFESPILR-GNDKNATD----REKRVGSHVAKELRDRIQPY 622
+L N P++ + K F + F P + G N D EK+V V L ++P+
Sbjct: 1150 SLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKV--IVIHRLHQILEPF 1207
Query: 623 FLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSPLA 682
LRR +V L K +++ R+++ Q +Y+ + + D L
Sbjct: 1208 MLRRRVEDV--------EGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLR 1259
Query: 683 A-----------------ITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLA 725
A L+K C+H LL
Sbjct: 1260 AQKNPIYQAKIYRTLNNRCMELRKACNHPLL----------------------------- 1290
Query: 726 MHIADVAETDEF-KDVHDASC-KISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAA 783
+ ++F KD SC K+ + +L L GH VL+FS K+L++++E L
Sbjct: 1291 ----NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 1346
Query: 784 RSYDFLRIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
R + RIDGTT DR + DF D IF AD V++ DP
Sbjct: 1347 RRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDP 1406
Query: 843 NPSTDNQSVDRAYRIGQKKDV-IVY 866
NP + Q+V RA+RIGQ ++V ++Y
Sbjct: 1407 NPKNEEQAVARAHRIGQTREVKVIY 1431
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 166/380 (43%), Gaps = 76/380 (20%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLI 438
T + P L +Q GL WL + + G GIL D+MGLGKT+Q FLA L + I
Sbjct: 575 TVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 634
Query: 439 RR-VLVVAPKTLLPHWIKELSVVGLAEKTREYFGT-------------------SMKLRE 478
LVVAP ++L +W E+S KT Y+G S +
Sbjct: 635 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRVMFFSTWIIS 694
Query: 479 YELQYILQ-------------------DKG--VLLTTYDIVRNNSKSLRGHSHFDDDESD 517
++ + Q D G +L+T+Y ++ + K R
Sbjct: 695 FDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFR----------- 743
Query: 518 DPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPEL 577
W YM+LDE IK+ S+ R K+LL +R++++GTP+QNN+ ELWAL +F P L
Sbjct: 744 RVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPML 803
Query: 578 LGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDK 637
++ F E F I +N + + H L ++P+ LRR+K +V
Sbjct: 804 FDNHDQFNEWFSKGI-----ENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDV------ 852
Query: 638 NKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGS----------PLAAITI- 686
+EL+ K E+ V +L+S Q+ Y+A + FD + L I I
Sbjct: 853 --VSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQ 910
Query: 687 LKKICDHALLMTKRAAEDVL 706
L+K+C+H L + L
Sbjct: 911 LRKVCNHPELFERNEGSSYL 930
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 79/143 (55%)
Query: 744 SCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKI 803
S K+ + LL L H VL+F+Q KMLN++++ + R Y +LR+DG++ DR +
Sbjct: 1238 SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDM 1297
Query: 804 VNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 863
V DFQ +F AD VI + WNP+ D Q++DRA+R+GQ KDV
Sbjct: 1298 VRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1357
Query: 864 IVYRLMTCGTVEEKIYRKQVYKG 886
VYRL+ TVEEKI + K
Sbjct: 1358 TVYRLICKETVEEKILHRASQKN 1380
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/583 (22%), Positives = 241/583 (41%), Gaps = 99/583 (16%)
Query: 365 AVDDGSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWLWS-------LHCLGK-------- 409
++++G ++ G ++ K+PG +M YPHQ++G ++W L+ L
Sbjct: 800 SLNEGCVSSEGTVWD-KIPGVKSQM-YPHQQEGFEFIWKNLAGTIMLNELKDFENSDETG 857
Query: 410 GGILGDDMGLGKTMQICGFLAGLFHSRLIRRVLVVAPKTLLPHWIKEL------------ 457
G I+ G GKT FL + +++AP +LL W +E
Sbjct: 858 GCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKWNISIPFHNL 917
Query: 458 -----------SVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTYDI------VRN 500
+ +GL + ++ ++R ++ ++ K +L +Y++ V++
Sbjct: 918 SSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKD 977
Query: 501 NSKSLRGHSHFDDDESDDPTWD-------YMILDEGHLIKNPSTQRAKSLLEIPSAHRII 553
K + D+ D + ++LDE H +N + K+L ++ + RI+
Sbjct: 978 EDKKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRIL 1037
Query: 554 ISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKR-----VG 608
+SGTP QNN EL + P+ L E+ S L+ + T R K+ +
Sbjct: 1038 LSGTPFQNNFLELCNVLGLARPKYL-------ERLTS-TLKKSGMTVTKRGKKNLGNEIN 1089
Query: 609 SHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLK 668
+ +EL+ + P F+ K + + L +E +V L QR + E+
Sbjct: 1090 NRGIEELKAVMLP-FVHVHKGSILQ-------SSLPGLRECVVVLNPPELQRRVLESI-- 1139
Query: 669 SEIVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHI 728
E+ + + L + H L+++ + E+L++
Sbjct: 1140 -EVTHNRKTKNVFETEHKLSLVSVHPSLVSRCKISE----------------KERLSIDE 1182
Query: 729 ADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAAR---- 784
A +A+ + + + S K F+M ++ VL+FSQ L LI ++L +R
Sbjct: 1183 ALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWN 1242
Query: 785 -SYDFLRIDGTTKASDRIKIVNDFQDGIG-APIFXXXXXXXXXXXXXXRADRVIVVDPAW 842
+ L + G + R ++N+F D A +F A RVI++D W
Sbjct: 1243 PGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVW 1302
Query: 843 NPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYK 885
NP+ + Q++ RAYRIGQK+ V Y L+ GT E Y KQ K
Sbjct: 1303 NPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQK 1345
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 123/515 (23%), Positives = 204/515 (39%), Gaps = 91/515 (17%)
Query: 381 KLPGTIGKMLYPHQRDGLNWLWSLHCLGKGG--ILGDDMGLGKTMQICGFLAGLFHSRLI 438
K+P I L P QR+G+ ++ L GG +L D+MGLGKT+Q + S
Sbjct: 163 KIPSHIEPKLLPFQREGIEFI-----LQHGGRVLLADEMGLGKTLQAIAVTTCVQESW-- 215
Query: 439 RRVLVVAPKTLLPHWIKEL---------SVVGLAEKTREYFGTSMKLREYELQYILQDKG 489
VL++AP +L HW + +V + + + + + G
Sbjct: 216 -PVLIIAPSSLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDG 274
Query: 490 VL-LTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEI-- 546
V + +YD+V K L + +I DE H +KN +R + L +
Sbjct: 275 VFNIVSYDVVTKLDKLLMALD-----------FKVVIADESHFLKNGQAKRTSACLPVIK 323
Query: 547 PSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKR 606
+ + I++SGTP + EL+ P++ + + ++ G + A++ +
Sbjct: 324 KAQYAILLSGTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKGGFFGTYQGASNHD-- 381
Query: 607 VGSHVAKELRDRIQP-YFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEA 665
EL + ++ +RRLK +V EL K+ V+L L + A
Sbjct: 382 -------ELHNLMKATVMIRRLKKDVLT--------ELPSKRRQQVFLDLAAKDMKQINA 426
Query: 666 FLKSEIVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMD-SELKPEEANVAEKL 724
H L + K +D + D LK E N+ K+
Sbjct: 427 LF-------------------------HELKVVKSKIKDCISEDDIKSLKFIEKNLINKI 461
Query: 725 AMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAAR 784
TD A KI ++ L+N+I G L+F+ + ML + + L +
Sbjct: 462 Y--------TDS------AVAKIPAVLDYLENVIEAGCKFLVFAHHQSMLEELHQFLKKK 507
Query: 785 SYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNP 844
+RIDG+T AS R +V+DFQD A VI + +W P
Sbjct: 508 KVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTP 567
Query: 845 STDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIY 879
Q+ DRA+RIGQ V ++ L+ TV++ I+
Sbjct: 568 GDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIW 602
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 134/577 (23%), Positives = 239/577 (41%), Gaps = 107/577 (18%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLW--------------SLHCLGKGGILGDDMGLGKTMQ 424
+ L + + L+ HQ+ +LW S +G G ++ G GKT
Sbjct: 663 VWSLIPQLKRKLHLHQKKAFEFLWKNLAGSVVPAMMDPSSDKIG-GCVVSHTPGAGKTFL 721
Query: 425 ICGFLAGLFHSRLIRRVLVVAPKTLLPHWIKEL------SVVGLAEKTREYFGTSMKLRE 478
I FLA +R LV+APKT L W KE V L R Y + K +
Sbjct: 722 IIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCMSKEKTIQ 781
Query: 479 YE-LQYILQDKGVLLTTYDIVR----NNSKSLRGHSHFDDDESDDPTWDY---------- 523
+E + QD +L D ++ S + G++ F +D + +
Sbjct: 782 FEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYMAKVLRE 841
Query: 524 ----MILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLG 579
++LDEGH ++ ++ K+L+++ + RI++SGT QNN E FN C
Sbjct: 842 SPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEY---FNTLCLA--- 895
Query: 580 DNKWFKEKFESPILRGNDKN-ATDREKRVGSHVAKELRDRIQPYFL----RRLKSEVFNQ 634
+ KF +L DK T++ ++ H+ L +R + +FL +++ ++V ++
Sbjct: 896 -----RPKFVHEVLVELDKKFQTNQAEQKAPHL---LENRARKFFLDIIAKKIDTKVGDE 947
Query: 635 DD------KNKTAELSQKQE------------IIVWLRLTSTQRHLYEAFLKSEIVVSAF 676
+N T+ E + ++ L ++ +++ K + ++S +
Sbjct: 948 RLQGLNMLRNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTY 1007
Query: 677 DGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDE 736
G PL ++ H L+ P+E EKL
Sbjct: 1008 HGYPLELELLITLAAIHPWLVKTTTC------CAKFFNPQELLEIEKLK----------- 1050
Query: 737 FKDVHDA--SCKISFIMSLLDNLIPEGHNVLIFSQT----RKMLNLIQENL-AARSYDFL 789
HDA K+ F+++L+ ++ +LIF R L L + R + L
Sbjct: 1051 ----HDAKKGSKVMFVLNLVFRVVKR-EKILIFCHNIAPIRLFLELFENVFRWKRGRELL 1105
Query: 790 RIDGTTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDN 848
+ G + +R ++++ F++ G + + A RVI++D WNPS
Sbjct: 1106 TLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTK 1165
Query: 849 QSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYK 885
Q++ RA+R GQ+K V VY+L++ GT+EE YR+ +K
Sbjct: 1166 QAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWK 1202
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 129/549 (23%), Positives = 228/549 (41%), Gaps = 80/549 (14%)
Query: 390 LYPHQRDGLNWLWS-LHCLGKGG-ILGDDMGLGKTMQICGFLAGLFHSRLIRRVLVVAPK 447
+ PHQ +G +L S L GG I+ G GKT I F+ + LVV PK
Sbjct: 350 MKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLPK 409
Query: 448 TLLPHWIKELSVVGLAE-KTREYFGTSMKLREYELQYI---LQDKGVLLTTYDIVRNNSK 503
+LP W KE + + +++ + R +L + ++ K +L Y
Sbjct: 410 GILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSILFLGYQ------- 462
Query: 504 SLRGHSHFDDDESDDPTW--------DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
+ + DD +D + +ILDEGH +N T +SL ++ + ++++S
Sbjct: 463 --QFSTIVCDDTTDSLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLS 520
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKEL 615
GT QN++KE++ + N P+ L K ++ K+A KR+ ++ ++
Sbjct: 521 GTLYQNHVKEVFNILNLVRPKFL--------KLDT------SKSAV---KRILAYTPCDV 563
Query: 616 RDRIQPYFLRRLKSEVFNQDDKN---KTAELSQKQEIIVWLR-LTSTQRHLYEAFLKSEI 671
R R+ + +FN+ ++ K+ + + K ++I LR +T H Y+ E+
Sbjct: 564 RGRLTGS--NSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDEL 621
Query: 672 VVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADV 731
LA T++ L ++ + +V + + K + + V + +H
Sbjct: 622 -------PGLADFTVV-------LNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKLK 667
Query: 732 AETDEFKDVHDAS-------------CKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQ 778
+D+ DV D + K F ++L++ G +L+FSQ L +
Sbjct: 668 VFSDKSDDVSDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFL- 726
Query: 779 ENLAARS------YDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRA 832
E LAA + + + G T + R + F A IF A
Sbjct: 727 ERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAKIFFGSIKACGEGISLVGA 786
Query: 833 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTA 892
R++++D NPS Q++ RA+R GQKK V YRL+ + EE+ + K + K
Sbjct: 787 SRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMW 846
Query: 893 TEQKEQTRY 901
E E Y
Sbjct: 847 FEWNEYCGY 855
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 120/524 (22%), Positives = 213/524 (40%), Gaps = 63/524 (12%)
Query: 390 LYPHQRDGLNWLWS-LHCLGKGG-ILGDDMGLGKTMQICGFLAGLFHSRLIRRVLVVAPK 447
+ PHQ +G +L + L GG IL G GKT + FL R LVV PK
Sbjct: 265 MRPHQTEGFRFLCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPK 324
Query: 448 TLLPHWIKELSVVGLAE-KTREYFGTSMKLREYELQYI---LQDKGVLLTTYDIVRNNSK 503
++ W +E ++ + + +++ + R+ +L+ + ++++ +L Y
Sbjct: 325 GIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGY----QQFT 380
Query: 504 SLRGHSHFDDDESD-------DPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISG 556
+ +F+ D PT +ILDEGH +N T SL + + +++++G
Sbjct: 381 RIICDDNFEAASEDCKLILLEKPT--LLILDEGHTSRNKETYMLSSLARVKTRRKVVLTG 438
Query: 557 TPLQNNLKELWALFNFCCPELL---GDNKWFKEKF-ESPILRGNDKNATDREKRVGSHVA 612
T QNN++E++ + + P+ L G + ++ I RG N + A
Sbjct: 439 TLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGTFFAA 498
Query: 613 KELRDRIQPYF---------LRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLY 663
EL + F LR + + + + + L E V L L+S QR
Sbjct: 499 VELTLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEV 558
Query: 664 EAFLKSEIVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEK 723
+ K E+ G AA+ I K + S L+ +N +
Sbjct: 559 KGLRKMELFKQISLG---AALYIHPK-------------------LKSFLEENPSNGEKG 596
Query: 724 LAMHIADVAETDEFK---DVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQEN 780
+ + V + D+ +V D K+ F ++LL G +L+FSQ + ++
Sbjct: 597 FSDNNTTVMKLDKMLKKINVRDG-VKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERL 655
Query: 781 LAAR-----SYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRV 835
+++ + I G + R + F + + A +F A RV
Sbjct: 656 MSSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSLEAKVFFGSIKACGEGISLVGASRV 715
Query: 836 IVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIY 879
+++D NPS Q+V RAYR GQK+ V Y+L+ + EE+ Y
Sbjct: 716 LILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENY 759
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 127/573 (22%), Positives = 235/573 (41%), Gaps = 98/573 (17%)
Query: 379 TYKLPGTIGKMLYPHQRDGLNWLW---------SLHCLGKGGILGDDM----GLGKTMQI 425
+ L + + L+ HQR +LW SL G I G + G GKT I
Sbjct: 668 VWALIPKLKRKLHVHQRRAFEFLWRNVAGSVEPSLMDPTSGNIGGCVISHSPGAGKTFLI 727
Query: 426 CGFLAGLFHSRLIRRVLVVAPKTLLPHWIKEL------SVVGLAEKTREYFGTSMKLREY 479
FL +R LV+APKT L W KE V L R Y +
Sbjct: 728 IAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYC-------TF 780
Query: 480 ELQYILQDKGVLLTTYDIVR-------------NNSKSLRGHSHFDDDESDDPTWDY--- 523
+ +Q GV + D++ + S + G++ F +D + +
Sbjct: 781 KQNKTVQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKY 840
Query: 524 -----------MILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNF 572
++LDEGH ++ ++ K+L+++ + RI++SGT QNN E +
Sbjct: 841 MAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCL 900
Query: 573 CCPELLGD-----NKWFKEKF---ESPILRGNDKNATDRE---KRVGSHVAKELRDRIQP 621
P+ + + ++ FK ++P L N + K++ + V E R+Q
Sbjct: 901 ARPKFIHEVLMELDQKFKTNHGVNKAPHLLENRARKLFLDIIAKKIDASVGDE---RLQG 957
Query: 622 Y-FLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSP 680
L+ + + + + + + + ++ + ++ ++ K + V+ + G P
Sbjct: 958 LNMLKNMTNGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYP 1017
Query: 681 LAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFKDV 740
L + H L+T +N K + +++E + K
Sbjct: 1018 LEVELQITLAAIHPWLVT------------------SSNCCTKF-FNPQELSEIGKLK-- 1056
Query: 741 HDA--SCKISFIMSLLDNLIPEGHNVLIFSQTR---KMLNLIQENL--AARSYDFLRIDG 793
HDA K+ F+++L+ ++ +LIF +M + EN+ R + L + G
Sbjct: 1057 HDAKKGSKVMFVLNLIFRVVKR-EKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTG 1115
Query: 794 TTKASDRIKIVNDFQD-GIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVD 852
+ +R ++++ F++ G + + A RVI++D WNPS Q++
Sbjct: 1116 DLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIA 1175
Query: 853 RAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYK 885
RA+R GQ+K V VY+L++ GT+EE YR+ +K
Sbjct: 1176 RAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWK 1208
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 1/169 (0%)
Query: 744 SCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKI 803
S KI+ ++ L+ L G ++FSQ L+L+Q L+ ++ F+R+DGT R K+
Sbjct: 862 SSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKV 921
Query: 804 VNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 863
+ +F + + A V+DP WNP+ + Q+V R +RIGQ K+V
Sbjct: 922 LKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEV 981
Query: 864 IVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYFTQQDLKDLFS 912
+ R + GTVEE++ Q K + A +E R ++LK LF+
Sbjct: 982 KIRRFIVKGTVEERMEAVQARKQRMISGALTDQE-VRSARIEELKMLFT 1029
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/456 (22%), Positives = 165/456 (36%), Gaps = 147/456 (32%)
Query: 359 ELDHFEAVDDGSITLIGPLFTYKLPGTIGKMLYPHQRDGLNWL----------------- 401
+LD+ V D S L + P T+ L P+Q+ L+W+
Sbjct: 322 DLDNIVGVGDSS-----GLKEMETPHTLLCELRPYQKQALHWMTQLEKGNCTDEAATMLH 376
Query: 402 --WSLHCLG---------------------------KGGILGDDMGLGKTMQI------- 425
W +CL +GGIL D MGLGKT+
Sbjct: 377 PCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAH 436
Query: 426 ------CGFLAG--------------------------LFHSRLIRRV--------LVVA 445
GFL F RL+ + L+V
Sbjct: 437 SWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVC 496
Query: 446 PKTLLPHWIKELSVVGLAEKTREY--FGTSMKLREYELQYILQDKGVLLTTYDIVRNNSK 503
P TLL W E+ + Y +G S + ++ +L L V++TTY ++
Sbjct: 497 PMTLLGQWKTEIEMHAKPGSLSVYVHYGQS-RPKDAKL---LSQSDVVITTYGVLT---- 548
Query: 504 SLRGHSHFDDDESDDPT------WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 557
S F + S D W ++LDE H IKN +Q + + + + R ++GT
Sbjct: 549 -----SEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGT 603
Query: 558 PLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRD 617
P+QNNL++L++L F E G W+ + + P G+++ K ++
Sbjct: 604 PIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG------------LKLVQS 651
Query: 618 RIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFD 677
++P LRR KS + L +++ L+ ++R Y+A K V FD
Sbjct: 652 ILKPIMLRRTKSS--TDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKV--KFD 707
Query: 678 ------------GSPLAAITILKKICDHALLMTKRA 701
S L + L++ CDH L+ R
Sbjct: 708 QFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRG 743
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 135/517 (26%), Positives = 208/517 (40%), Gaps = 57/517 (11%)
Query: 382 LPGTIGKMLYPHQRDGLNWLWSLHCLGKGG--ILGDDMGLGKTMQICGFLAGLFHSRLIR 439
LP + L P Q DGL + L +GG + D+MGLGKT+Q +AG F S
Sbjct: 196 LPRKLVNALLPFQLDGLRF-----GLRRGGRCFIADEMGLGKTLQAIA-IAGCFISE--G 247
Query: 440 RVLVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTYDIVR 499
+LVV P L W +EL E + S + L + QD L + V
Sbjct: 248 SILVVCPAVLRFTWAEEL----------ERWLPSCLPSDVHLVFGHQDNPAYLPRWPKVV 297
Query: 500 NNSKSLRGHSHFDDDESDDPTWDYMILDEGHLI----KNPSTQRAKSLLEIPSA--HRII 553
S + H E + W +I+DE H + K K++L++ H I+
Sbjct: 298 VISYKMLQHLRTTMLERE---WALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIIL 354
Query: 554 ISGTPLQNNLKELWALFNFCCPELLGDNKW--FKEKFESPILRG-NDKNATDREKRVGSH 610
+SGTP + +++ N P LLG +K+ K E ++RG K D K G+
Sbjct: 355 LSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSK--GTR 412
Query: 611 VAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSE 670
+ + Q +RRLK + Q L K+ IV + L + L A +
Sbjct: 413 LLELNILLNQTVMIRRLKQHLLTQ--------LPPKRRQIVTILLKKSDIALAMAIVSE- 463
Query: 671 IVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIAD 730
DG+ +A +T D + A E D +E + KL+
Sbjct: 464 -AKKQKDGA-IAEVTEKSHEPDQNARGSNEAGHVNAENSDGPNSDKENQLCGKLSYQQLG 521
Query: 731 VAETDEFKDVHDASCKISFIMSLLDNLIPE-------GHNVLIFSQTRKMLNLIQENLAA 783
+A+ F++ + ++S LD PE +++F+ K+L+ IQE +
Sbjct: 522 IAKLSAFREW----LSLHPLLSGLD-YTPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICD 576
Query: 784 RSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWN 843
+ F+RIDGTT DR V FQ I A V+ ++
Sbjct: 577 KGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKT 636
Query: 844 PSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
PS Q+ DRA+R GQ V VY T++E ++
Sbjct: 637 PSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQ 673
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 761 GHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
G ++FSQ KMLNL++ +L + + R+DGT + R K V DF +
Sbjct: 1123 GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1182
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
A V+++D WNP+T++Q++DRA+RIGQ + V V R TVE++I
Sbjct: 1183 KAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILA 1242
Query: 881 KQVYKGGLFKTA---TEQKEQTRYFTQQDLKDLF 911
Q K + +A E+ + + T +DL LF
Sbjct: 1243 LQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1276
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 761 GHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
G ++FSQ KMLNL++ +L + + R+DGT + R K V DF +
Sbjct: 965 GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1024
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
A V+++D WNP+T++Q++DRA+RIGQ + V V R TVE++I
Sbjct: 1025 KAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILA 1084
Query: 881 KQVYKGGLFKTA---TEQKEQTRYFTQQDLKDLF 911
Q K + +A E+ + + T +DL LF
Sbjct: 1085 LQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1118
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 24/197 (12%)
Query: 390 LYPHQRDGLNW--LWSLHCLGKGGILGDDMGLGKTMQICGFLAGL-----FHSR-LIRRV 441
L +Q++ L W + L + +GGIL D+MG+GKT+Q + SR +
Sbjct: 134 LLKYQKEFLAWATIQELSAV-RGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHT 192
Query: 442 LVVAPKTLLPHWIKELSVVGLAEKTR--EYFGTSMKLREYELQYILQDKGVLLTTYDIVR 499
LV+ P L W+ E+S + TR +Y G R+ +Q ++ + +LTT IV
Sbjct: 193 LVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPK---RDKNVQKLM-NYDFVLTTSPIVE 248
Query: 500 NNSKSLRGHSHFDDDESDDP----TWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
N + G DE+ P W+ +I+DE H IKN S++ AK++ + + +R +S
Sbjct: 249 NEYRKDEGV-----DETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALS 303
Query: 556 GTPLQNNLKELWALFNF 572
GTPLQN++ EL++L ++
Sbjct: 304 GTPLQNDVDELYSLVSY 320
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 765 LIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXX 824
++FSQ L+LI L +++ G+ + + + +F++ +
Sbjct: 529 IVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGG 588
Query: 825 XXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVY 884
A V ++DP WNP+ + Q+ DR +RIGQ K V V R + TVEEKI Q
Sbjct: 589 VALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKK 648
Query: 885 KGGLFKTATEQKEQ--TRYFTQQDLKDLFS 912
K LF++ E+ + + D+K LF+
Sbjct: 649 KEDLFESTLGDSEEAVVQKLGEDDIKSLFA 678
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 765 LIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDG--IGAPIFXXXXXX 822
++FSQ RKML L++ L A + LR+DG R +++ +F + G +
Sbjct: 710 VVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKA 769
Query: 823 XXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQ 882
A RV + DP WNP+ + Q++DR +RIGQK++V + R++ ++EE++ Q
Sbjct: 770 SGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQ 829
Query: 883 VYKGGLFKTATE--QKEQTRYFTQQDLKDLFSL 913
K L A + QK+ R +D+ L SL
Sbjct: 830 QKKKNLANEAFKRRQKKDEREVNVEDVVALMSL 862
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 439 RRVLVVAPKTLLPHWIKEL---SVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTY 495
+ L+V P +++ WI +L +V G+ K Y G D L Y
Sbjct: 339 KTTLIVCPPSVISAWITQLEEHTVPGIL-KVYMYHGGERT-----------DDVNELMKY 386
Query: 496 DIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 555
DIV +L ++D W +ILDE H IKN + Q+++ + ++ ++ R ++
Sbjct: 387 DIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVT 446
Query: 556 GTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDK 598
GTP+QN +L++L F E +++ + P+ +GN K
Sbjct: 447 GTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKK 489
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 137/349 (39%), Gaps = 69/349 (19%)
Query: 407 LGKGGILGDDMGLGKT-MQICGFLA-----------------------------GLFHSR 436
+ +GGIL D MGLGKT M I LA L +
Sbjct: 679 MARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVK 738
Query: 437 LIRRVLVVAPKTLLPHWIKELSVVGLAEKTRE--YFGTSMKLREYELQYILQDKGVLLTT 494
L++ P LL W EL + Y+G R ++ + I V+LTT
Sbjct: 739 AKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGD---RTHDAKAI-ASHDVVLTT 794
Query: 495 YDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 554
Y ++ + K +S F + W ++LDE H IK+ TQ AK+ E+ S R +
Sbjct: 795 YGVLTSAYKQDMANSIFHRID-----WYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCL 849
Query: 555 SGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKE 614
+GTPLQN L++L++L F E + W+ + + P G+ + K
Sbjct: 850 TGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRG------------LKL 897
Query: 615 LRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVS 674
++ ++P LRR K + + EL ++ + +R Y A K V
Sbjct: 898 IKAILRPLMLRRTKET--RDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKV-- 953
Query: 675 AFD------------GSPLAAITILKKICDHALLMTKRAAEDVLEGMDS 711
FD + L + L++ C+H L+ RA +DS
Sbjct: 954 QFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDS 1002
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 744 SCKISFIMSLLDNLIPEG--HNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRI 801
S K+S ++ L+ + G ++FSQ L+L++ L R ++FLR DG R
Sbjct: 1108 SSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGRE 1167
Query: 802 KIVNDFQDGIGAPIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 861
K++ +F + I A V ++DP WNP+ + Q++ R +RIGQK+
Sbjct: 1168 KVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKR 1227
Query: 862 DVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYFTQQDLKDLF 911
V V R + TVEE++ + Q K + A E+ R ++LK LF
Sbjct: 1228 TVFVRRFIVKDTVEERMQQVQARKQRMIAGAL-TDEEVRSARLEELKMLF 1276
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 121/288 (42%), Gaps = 59/288 (20%)
Query: 383 PGTIGKMLYPHQRDGLNWLW-----SLHCLGKGGILGDDMGLGKTMQ-ICGFLAGLFHSR 436
PG + L HQ+ LNW+ S HCLG GIL DD GLGKT+ I L S+
Sbjct: 46 PGVLTVPLMRHQKIALNWMRKKEKRSRHCLG--GILADDQGLGKTISTISLILLQKLKSQ 103
Query: 437 LIRR---------VLVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYE------L 481
+R L+V P +++ W +E+ EK + S+ +
Sbjct: 104 SKQRKRKGQNSGGTLIVCPASVVKQWAREVK-----EKVSDEHKLSVLVHHGSHRTKDPT 158
Query: 482 QYILQDKGVLLTTYDIVRN---------NSKSLRGHSHFDDDESDDP--------TWDYM 524
+ + D V++TTY IV N S+RG D P W +
Sbjct: 159 EIAIYD--VVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRV 216
Query: 525 ILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWF 584
+LDE H IKN T AK+ + + R ++GTP++N + +L++ F F F
Sbjct: 217 VLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSF 276
Query: 585 KEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVF 632
++ ++PI DK H K+L+ ++ LRR K F
Sbjct: 277 HQRIKAPI----DKKPL--------HGYKKLQAILRGIMLRRTKEWSF 312
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 832 ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKT 891
A VI++D WNP+T++Q++DRA+RIGQ + V V R+ TVEE+I K + +
Sbjct: 526 ASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVAS 585
Query: 892 ATEQKEQTRY 901
A +K ++
Sbjct: 586 ALGEKNWQKF 595
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 764 VLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXX 823
+IFSQ ML+L++ +L S +F R+DGT R + V +F + +
Sbjct: 829 TIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAG 888
Query: 824 XXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQV 883
A VI++D WNP+T++Q++DRA+RIGQ + V V R+ TVE++I Q
Sbjct: 889 NLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQE 948
Query: 884 YKGGLFKTATEQ----KEQTRYFTQQDLKDLF 911
K + +A + TR T DLK LF
Sbjct: 949 EKRKMVASAFGEDHGGSSATR-LTVDDLKYLF 979
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 521 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGD 580
W ++LDE IKN TQ A++ + + R +SGTP+QN + +L++ F F +
Sbjct: 471 WFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAV 530
Query: 581 NKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFN-QDDKN- 638
K F + + PI R + + K+L+ ++ LRR K + + Q N
Sbjct: 531 YKSFCHQIKGPISRNSLQG------------YKKLQAVLRAIMLRRTKGTLLDGQPIINL 578
Query: 639 --KTAELSQ----KQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSPLAAITILKKICD 692
KT LSQ +E +++L S R ++A+ + + + + L + L++ CD
Sbjct: 579 PPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNY-ANILLMLLRLRQACD 637
Query: 693 HALLMTKRAAEDV 705
H L+ + ++ V
Sbjct: 638 HPQLVKRYNSDSV 650
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 761 GHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
G ++F+Q KML+L++ L + + R DG R V DF +
Sbjct: 1071 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1130
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
A VI++D WNP+T++Q++DRA+RIGQ + V V R TVE++I
Sbjct: 1131 KAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILA 1190
Query: 881 KQVYKGGLFKTA---TEQKEQTRYFTQQDLKDLF 911
Q K + +A E + + + +DL LF
Sbjct: 1191 LQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1224
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 97/254 (38%), Gaps = 49/254 (19%)
Query: 384 GTIGKMLYPHQRDGLNWLWSLHCLGK---GGILGDDMGLGKTMQICGFL----------- 429
G + L HQR L+W+ G GGIL DD GLGKT+ +
Sbjct: 536 GVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPC 595
Query: 430 ------AGLF---HSRLIRR-------------------VLVVAPKTLLPHWIKELSVVG 461
G HS+++ L+V P +L+ W EL
Sbjct: 596 EEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLIVCPTSLMRQWADELRKKV 655
Query: 462 LAEKTRE---YFGTSMKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGHSHFDDDESDD 518
E Y G S +EL V++TTY +V F
Sbjct: 656 TLEAHLSVLVYHGCSRTKDPHELA----KYDVVITTYSLVSKRKHMDCEPVEFLSGPLAQ 711
Query: 519 PTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELL 578
+W ++LDE IKN TQ + + + + R +SGTP+QN++ +L++ F F +
Sbjct: 712 VSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPY 771
Query: 579 GDNKWFKEKFESPI 592
+ F E ++PI
Sbjct: 772 SSYQTFCETIKNPI 785
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 761 GHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXX 820
G ++F+Q KML+L++ L + + R DG R V DF +
Sbjct: 1114 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1173
Query: 821 XXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYR 880
A VI++D WNP+T++Q++DRA+RIGQ + V V R TVE++I
Sbjct: 1174 KAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILA 1233
Query: 881 KQVYKGGLFKTA---TEQKEQTRYFTQQDLKDLF 911
Q K + +A E + + + +DL LF
Sbjct: 1234 LQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1267
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 764 VLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXX 823
+IFSQ ML+L++ + +F R+DGT + R + V +F +
Sbjct: 895 TIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAG 954
Query: 824 XXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQV 883
A VI++D WNP+T++Q++DRA+RIGQ + V V R+ TVE++I + Q
Sbjct: 955 NLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQE 1014
Query: 884 YKGGLFKTATEQK---EQTRYFTQQDLKDLF 911
K + +A ++ T DLK LF
Sbjct: 1015 EKRTMVASAFGEEHGGSSATRLTVDDLKYLF 1045
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 64/211 (30%)
Query: 441 VLVVAPKTLLPHWIKELSVVGLAEKTRE--------YFGTSMKLREYELQYILQDKGVLL 492
L+V P +++ W +EL EK E Y G++ EL + V++
Sbjct: 416 TLIVCPASVVRQWARELD-----EKVSEESKLSVLVYHGSNRTKDPNELA----EYDVVV 466
Query: 493 TTYDIVRNNS---------------------------------------KSLRGHSHFDD 513
TTY IV N + KS R +
Sbjct: 467 TTYAIVTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTN 526
Query: 514 DESDDP--------TWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKE 565
D S +P W ++LDE IKN TQ A+S + + R +SGTP+QN + +
Sbjct: 527 DTSSEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDD 586
Query: 566 LWALFNFCCPELLGDNKWFKEKFESPILRGN 596
L++ F F + K F + PI R +
Sbjct: 587 LYSYFRFLRYDPYAVYKSFYSTIKVPISRNS 617
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Query: 765 LIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFXXXXXXXX 824
++FSQ L+LI L +++ G+ + R +N F++ +F
Sbjct: 684 IVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGG 743
Query: 825 XXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVY 884
A V ++DP WNP+ + Q+ DR +RIGQ K + V R + TVEE+I R Q
Sbjct: 744 VALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKK 803
Query: 885 KGGLFK-TATEQKEQTRYFTQQDLKDLFS 912
K +F+ T +E T++D++ LF+
Sbjct: 804 KELVFEGTVGGSQEAIGKLTEEDMRFLFT 832
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 764 VLIFSQTRKMLNLIQENLAARS-----YDFLRIDGTTKASDRIKIVNDFQD-GIGAPIFX 817
VL++SQ L LI E L A L + G + DR ++++F G+ +
Sbjct: 946 VLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLL 1005
Query: 818 XXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEK 877
A RV+++D WNPS ++Q++ RA+RIGQK+ V +Y LM T E
Sbjct: 1006 ASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWN 1065
Query: 878 IYRKQVYK 885
Y KQ K
Sbjct: 1066 KYCKQSEK 1073
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 764 VLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRI-----------KIVNDFQDGIG 812
VL+FS +L++++ AA S +R+ G K+ I K + ++
Sbjct: 1452 VLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEKS 1511
Query: 813 APIFXXXXXXXXXXXXXXRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCG 872
+ A VI+V+P NP+ + Q+V R +RIGQ+K +V+R + G
Sbjct: 1512 IQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSG 1571
Query: 873 TVEEKIYRKQVYKG---GLFKTATEQKEQTRYFTQQDLKDLFSLP 914
TVEE IY+ K F + + + ++ T +DL+ LF+ P
Sbjct: 1572 TVEESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLKDLESLFASP 1616
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 64/255 (25%)
Query: 441 VLVVAPKTLLPHWIKELS--------VVGLAEKTREYFGTSMKLREYELQYI--LQDKGV 490
L+V P +LP W E++ + + E R + L E + I L + +
Sbjct: 502 TLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVR-----NASLSEEPMIDITELLNADI 556
Query: 491 LLTTYDIVRNNSKSLRGHSH-FDDDESDD------------PT------WDYMILDEGHL 531
+LTTYD+++ + +H FD + D PT W + LDE +
Sbjct: 557 VLTTYDVLKEDL------THDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICLDEAQM 610
Query: 532 IKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESP 591
+++ + + L + + HR I+GTP+Q L +L+ L F ++W+ E P
Sbjct: 611 VESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWWIEVIRDP 670
Query: 592 ILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTA---ELSQKQE 648
R RD F + +V + K A +L ++E
Sbjct: 671 YER---------------------RDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEE 709
Query: 649 IIVWLRLTSTQRHLY 663
+ WL+ ++ + H Y
Sbjct: 710 CVSWLKFSAIEEHFY 724