Miyakogusa Predicted Gene

Lj4g3v2821280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2821280.1 Non Chatacterized Hit- tr|I3SMC1|I3SMC1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.55,0,Galactose-binding domain-like,Galactose-binding
domain-like; no description,PITH domain; PITH,PITH d,CUFF.51721.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25950.1 | Symbols:  | Protein of unknown function (DUF1000) ...   369   e-103
AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000) ...    51   6e-07

>AT2G25950.1 | Symbols:  | Protein of unknown function (DUF1000) |
           chr2:11068735-11070524 FORWARD LENGTH=204
          Length = 204

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/203 (85%), Positives = 189/203 (93%)

Query: 1   MSCLHDHSCEDHDCSTDWSLYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLES 60
           MSC HDH+CEDH+CS+DWSLYKHIDLSKVSALNE+  GS KSVFKAWE RL+SSG HLES
Sbjct: 1   MSCTHDHNCEDHECSSDWSLYKHIDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLES 60

Query: 61  NEGDPELLVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD 120
           NEGDPELLVF+PFTSDVKIKSISIVGG +GTSPSK+R FINR+GIDFSDA+SMQA+QEW+
Sbjct: 61  NEGDPELLVFVPFTSDVKIKSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWE 120

Query: 121 LAENMQGVLEYQTRYSIFQSVGHITLHFPESFGGDTTKIHYIGFKGEATQLKRDVVATIV 180
           LAEN+QGVLEYQTRYS FQSVG+ITLHFPESFGGDTT+I YIGFKGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQSVGNITLHFPESFGGDTTQIRYIGFKGEATQLKRDVVATIV 180

Query: 181 YEITPNPSDHKTHAESGGGLSHV 203
           YEI PNPSDHKT AE+GGG S V
Sbjct: 181 YEIRPNPSDHKTKAETGGGFSQV 203


>AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000) |
           chr3:1311447-1313013 REVERSE LENGTH=176
          Length = 176

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 20  LYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLESNEGDPELLVFIPFTSDVKI 79
           L   ID S V  LN+++  S+ +  K  +      G +LES+  D +LL++IPF   +K+
Sbjct: 16  LLDFIDWSGVECLNQSSSHSLPNALK--QGYREDEGLNLESD-ADEQLLIYIPFNQVIKL 72

Query: 80  KSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLA-ENMQGVLEYQTRYSIF 138
            S +I  G +   P  ++ F N++ + FS+          +L  EN++G      +Y  F
Sbjct: 73  HSFAI-KGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGK-PVVLKYVKF 130

Query: 139 QSVGHITLHF-PESFGGDTTKIHYIGFKG---EATQLK 172
           Q+V  +T+       G + TK+  I   G   E T +K
Sbjct: 131 QNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMK 168