Miyakogusa Predicted Gene

Lj4g3v2821270.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2821270.2 Non Chatacterized Hit- tr|I3T743|I3T743_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,92.5,0,Thioredoxin-like,Thioredoxin-like fold; SCO1/SENC,Copper
chaperone SCO1/SenC; seg,NULL; no descripti,CUFF.51720.2
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein | chr4...   258   2e-69
AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC famil...   155   3e-38

>AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:18435586-18437095 REVERSE LENGTH=276
          Length = 276

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 166/263 (63%), Gaps = 22/263 (8%)

Query: 14  LRSTRQALTLLPRSVPSRTTQSASY-RNSAESHS-----------------SRSWGAYVI 55
           L    QA + L R  PS+  QS +Y +++ + H                  SRS   Y +
Sbjct: 9   LSCKNQAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQAPSRSRARYAV 68

Query: 56  SXXXXXXXXXXXXXHYNDLNSFTLKSLKFKCLGKGHANRPKIRG----GPFTLTNTENQT 111
                         HYND      +       G G  +   ++G    GPFTL +TEN+ 
Sbjct: 69  PAILLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPFTLVSTENKI 128

Query: 112 VTERDFLGKWVLLYFGYTSSPDIGPAQLLLMSMIIDILESKHKVKVLPVFVSIDPQRDTP 171
           VTE DF GKWVLLYFGY+ SPD+GP QL +MS  +D LESKH  K+LPVFV++DPQRDTP
Sbjct: 129 VTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQRDTP 188

Query: 172 SQIRAYLKVFDSRITGLTGPVAAVRQMAQEYRVYFKKVEEDGDDYLVDISHSMYLLNPKM 231
           S + AYLK FDSRI GLTG  +A+RQMAQEYRVYFKKV+EDG+DYLVD SH+MYL+NPKM
Sbjct: 189 SHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYLINPKM 248

Query: 232 EVARCFGIEYNAEQLSEAIWKEL 254
           E+ RCFG+EYN ++LS+ + KE+
Sbjct: 249 EIVRCFGVEYNPDELSQELLKEV 271


>AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
           protein | chr3:2727285-2729289 FORWARD LENGTH=334
          Length = 334

 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 115/187 (61%), Gaps = 6/187 (3%)

Query: 70  HYNDLNSFTLKSLKFKCLGKGHANRPKIRGGPFTLTNTENQTVTERDFLGKWVLLYFGYT 129
           H  D+N  ++   +    GK         GGPF+L   + + VTE++ +GKW +LYFG+T
Sbjct: 151 HIEDINKNSIAVKEGPSAGKAAI------GGPFSLIRDDGKRVTEKNLMGKWTILYFGFT 204

Query: 130 SSPDIGPAQLLLMSMIIDILESKHKVKVLPVFVSIDPQRDTPSQIRAYLKVFDSRITGLT 189
             PDI P +L+ ++  ID ++    V V+PVF+S+DP+RDT  Q+  Y+K F  ++ GLT
Sbjct: 205 HCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHEYVKEFHPKLIGLT 264

Query: 190 GPVAAVRQMAQEYRVYFKKVEEDGDDYLVDISHSMYLLNPKMEVARCFGIEYNAEQLSEA 249
           G    ++ +A+ YRVY+ K EE+  DYLVD S  MYL++P+M   + +G  ++ + L++ 
Sbjct: 265 GSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTDG 324

Query: 250 IWKELNK 256
           + KE+ +
Sbjct: 325 VVKEIRQ 331