Miyakogusa Predicted Gene

Lj4g3v2821270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2821270.1 Non Chatacterized Hit- tr|I1KT38|I1KT38_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15699 PE,77.17,0,no
description,Thioredoxin-like fold; SCO1/SENC,Copper chaperone
SCO1/SenC; seg,NULL; Thioredoxin-li,CUFF.51720.1
         (275 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein | chr4...   323   1e-88
AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC famil...   160   9e-40

>AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:18435586-18437095 REVERSE LENGTH=276
          Length = 276

 Score =  323 bits (827), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 187/263 (71%), Gaps = 5/263 (1%)

Query: 13  LRSTRQTLILLRRSVPSKTTQSVSYTNSTQQGKPKYELXXXXXXXXXXXXXXXXWGAYII 72
           L    Q    LRR  PSK  QSV+Y  ST+QG    ++                   Y +
Sbjct: 9   LSCKNQAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQAPSRSRARYAV 68

Query: 73  PAAVLGFAGIAAFFHYNDERRAVPKGHQGSSQIANVAN-----GPIIGGPFTLINTEKEP 127
           PA +LGFAG   F HYNDERRAVP+G   S+      +     GPIIGGPFTL++TE + 
Sbjct: 69  PAILLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPFTLVSTENKI 128

Query: 128 VTERTFLGKWVLLYFGYTSSPDIGPEQVHLMAKAIDILESKQNLKILPVFVTIDPQRDSP 187
           VTE  F GKWVLLYFGY+ SPD+GPEQ+ +M+KA+D LESK N KILPVFVT+DPQRD+P
Sbjct: 129 VTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQRDTP 188

Query: 188 SQLRAYLKEFDSRIIGLTGPVAAVRQMAQEYRVYFKKVEEDGDDYLVDISHSMYLLNPKM 247
           S L AYLKEFDSRI+GLTG  +A+RQMAQEYRVYFKKV+EDG+DYLVD SH+MYL+NPKM
Sbjct: 189 SHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSHNMYLINPKM 248

Query: 248 EVARCFGIEYNAEQLSEAIWKEL 270
           E+ RCFG+EYN ++LS+ + KE+
Sbjct: 249 EIVRCFGVEYNPDELSQELLKEV 271


>AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
           protein | chr3:2727285-2729289 FORWARD LENGTH=334
          Length = 334

 Score =  160 bits (405), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 125/201 (62%), Gaps = 6/201 (2%)

Query: 77  LGFAGIAAFFHYNDERRAVPKGHQGSSQIANVANGP-----IIGGPFTLINTEKEPVTER 131
           L FA  A   +Y D ++         + IA V  GP      IGGPF+LI  + + VTE+
Sbjct: 132 LLFATGAGLVYYYDTQKKRHIEDINKNSIA-VKEGPSAGKAAIGGPFSLIRDDGKRVTEK 190

Query: 132 TFLGKWVLLYFGYTSSPDIGPEQVHLMAKAIDILESKQNLKILPVFVTIDPQRDSPSQLR 191
             +GKW +LYFG+T  PDI P+++  +A AID ++    + ++PVF+++DP+RD+  Q+ 
Sbjct: 191 NLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVH 250

Query: 192 AYLKEFDSRIIGLTGPVAAVRQMAQEYRVYFKKVEEDGDDYLVDISHSMYLLNPKMEVAR 251
            Y+KEF  ++IGLTG    ++ +A+ YRVY+ K EE+  DYLVD S  MYL++P+M   +
Sbjct: 251 EYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVK 310

Query: 252 CFGIEYNAEQLSEAIWKELNK 272
            +G  ++ + L++ + KE+ +
Sbjct: 311 FYGKNHDVDSLTDGVVKEIRQ 331