Miyakogusa Predicted Gene

Lj4g3v2820170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2820170.1 Non Chatacterized Hit- tr|Q9FJQ3|Q9FJQ3_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,46.4,6e-18,seg,NULL,CUFF.51707.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10110.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   117   1e-26
AT5G65120.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   110   1e-24

>AT5G10110.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G65120.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:3166660-3167938 REVERSE LENGTH=321
          Length = 321

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 156/333 (46%), Gaps = 60/333 (18%)

Query: 12  VKPQPRPVLSDVTNLRAKRPFSSISADDGDSRFTKKKVQSKLGVQAQQGRSNKDKVVVSQ 71
           V  Q RPVLSD+TNL  KR  SSI  D  D                + G++   +V  S+
Sbjct: 9   VSEQTRPVLSDLTNLPKKRGISSILGDLLD----------------ESGKTVAHEV--SK 50

Query: 72  QK-GQNPCLELPFCGDDSLGNVSSQESNLQLPSGGLE-EKNLLGGAVVSGPTEVPVAVLG 129
           +K  +  CL +     D L  V    + L    G    +KN  G AV     E   AV+ 
Sbjct: 51  EKFSKRLCLVV-----DDL--VKENATPLDTIQGSCSFDKNTSGDAV--DKEEYHDAVM- 100

Query: 130 EIGQG--RPLNEG-----FIDRGIESGQRDVRAVDNLGSPKC-GGRAVELPTMSDSCDSR 181
           E   G  + L E      + + G   G R++ A  N       GG  + L  ++   +SR
Sbjct: 101 EFSSGDCKALKESKSIQIYFEPGDRDGARELNAAANADQTDVTGGEGLALSLLTSDTESR 160

Query: 182 -----------------FPGLERCSVLQGNAGPTSXXXXXDLLKSCTCSFCSKAAHIWSD 224
                            F  + RCS ++ N    +     DLL+SC CSFC  A++IWSD
Sbjct: 161 NLLKTGKELSDCQNLRSFE-MSRCSNVK-NKEHVNLNTGDDLLRSCCCSFCLTASYIWSD 218

Query: 225 LHYQDVKGRLSALKKSQKDASNAVQKLSEIKD-SVMPDQQXXXXXXKLELALMHQWKSLF 283
           L+YQD KGRLSA+KKSQK ASN +Q    +K+ S            K E  LM QW+SLF
Sbjct: 219 LNYQDSKGRLSAMKKSQKAASNLIQ--GNVKERSTDFHATGNSVSAKQESKLMAQWRSLF 276

Query: 284 DFMENTFAEESRQLESSFETLKDLRDNCKNDLD 316
             M +  +EES  L++SF  +K LRD+CK DL+
Sbjct: 277 LSMGDILSEESSHLQNSFVRMKKLRDDCKMDLE 309


>AT5G65120.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G10110.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:26013274-26014504 FORWARD LENGTH=317
          Length = 317

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 185 LERCSVLQGNAGPTSXXXXXDLLKSCTCSFCSKAAHIWSDLHYQDVKGRLSALKKSQKDA 244
           + RCS + G             LKSC+CSFC  AA+IWSDLHYQD+KGRLS LKKSQK+A
Sbjct: 176 MNRCSNVDGMGIVNHHMEADGELKSCSCSFCLTAAYIWSDLHYQDIKGRLSVLKKSQKEA 235

Query: 245 SNAVQKLSEIKDSVMPDQQXXXXXXKLELAL---MHQWKSLFDFMENTFAEESRQLESSF 301
           S  +Q+     D   P                  M QW SLF  ME   A ES  L +SF
Sbjct: 236 SGLIQR----NDRGTPTDIYGSENSNNSTNTDNPMEQWTSLFRNMEGILARESNHLHNSF 291

Query: 302 ETLKDLRDNCKNDLDSTDNTHFDNH 326
             +K+LR+NCK DL+    T   N+
Sbjct: 292 VAMKELRENCKIDLERATKTSQQNN 316