Miyakogusa Predicted Gene

Lj4g3v2819900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2819900.1 Non Chatacterized Hit- tr|D8RHF6|D8RHF6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,58.33,2e-16,seg,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; no description,NULL; SUBFAMILY NOT NAMED,N,CUFF.51698.1
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39810.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   327   7e-90
AT5G07710.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   261   2e-70
AT1G74390.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   257   7e-69
AT5G61390.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   255   3e-68
AT1G74390.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   230   6e-61

>AT4G39810.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr4:18474608-18475735
           REVERSE LENGTH=255
          Length = 255

 Score =  327 bits (837), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 163/247 (65%), Positives = 195/247 (78%), Gaps = 16/247 (6%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EIVFFDLET VP K GQ F +LEFGA++V P KL E+ESFTTLI+PKDL+VVS++SSR +
Sbjct: 9   EIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSD 68

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GITR  V NAPSFEDVA++I  +LNGR+WAGHNI+RFDCVRI+EAF  I +  P P G+I
Sbjct: 69  GITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGII 128

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSLG+L++KFG+RAGNMKMA+LA+YFGLG QKHRSLDDVRMNLEVLK+CATVLFLES+LP
Sbjct: 129 DSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLP 188

Query: 196 NTLHSKWHGSSSVMTRSRTNGKSPCKEETSRKSPPTSLAFQRTVPYTRGSLTKVTERVKG 255
           N L  KWH SS +MTRSR N +                  QR +PY++GSL K+T+ VK 
Sbjct: 189 NHLEGKWHTSSKIMTRSRRNYQIA----------------QRAMPYSKGSLEKMTQNVKN 232

Query: 256 LLCKAQG 262
           LL KAQG
Sbjct: 233 LLSKAQG 239


>AT5G07710.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:2453310-2455357
           FORWARD LENGTH=468
          Length = 468

 Score =  261 bits (668), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 147/180 (81%), Gaps = 1/180 (0%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EI FFD+ETTVP++ GQRF +LEFG+++V P KL+E+ S+TTL++P DL+++S  S R  
Sbjct: 8   EIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCN 66

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GI R+ V  AP F D+AD ++ IL+GR+WAGHNI RFDC RIREAF  I R PP P G I
Sbjct: 67  GIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPKGAI 126

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSLG+LT+KFGRRAG+MKMATLA YFGLG Q HRSLDDVRMNLEVLK CATVLFLESSLP
Sbjct: 127 DSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLESSLP 186


>AT1G74390.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:27961760-27963826
           REVERSE LENGTH=506
          Length = 506

 Score =  257 bits (656), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 155/202 (76%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EI FFDLET VP K G+ F +LEFGA++V P +L E+ S++TL+RP DL+++S  + R  
Sbjct: 12  EIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRRS 71

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GITR+ V +A +F ++AD+++ IL+GR+WAGHNI RFDCVRIREAF  I   PP P   I
Sbjct: 72  GITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPKATI 131

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLEV+K CATVLFLESS+P
Sbjct: 132 DSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLESSVP 191

Query: 196 NTLHSKWHGSSSVMTRSRTNGK 217
           + L      S     R+R+NGK
Sbjct: 192 DILTDMSWFSPRKSPRTRSNGK 213


>AT5G61390.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:24678802-24680857
           REVERSE LENGTH=487
          Length = 487

 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 163/216 (75%), Gaps = 3/216 (1%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EI FFD+ETT+P +VGQ + +LEFG+++V P KL E+++++ L+RP +L +++ +S +  
Sbjct: 15  EIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSVKCN 74

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GI RE V++A +F D+AD ++ IL+GR+WAGHNI +FDC RIREAF  I R PP P G I
Sbjct: 75  GIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRDPPEPKGTI 134

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSL +LT++FGRRAG+MKMATLA+YFGLG Q HRSLDDVRMN EVLK CATVLFLESSLP
Sbjct: 135 DSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATVLFLESSLP 194

Query: 196 NTLHSKWHGSSSVMT---RSRTNGKSPCKEETSRKS 228
           + L      +++  T   R RT  KSP +  T +++
Sbjct: 195 DELIENSVTTTTPETSSRRRRTIKKSPLQSPTDQQT 230


>AT1G74390.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:27961760-27963826
           REVERSE LENGTH=495
          Length = 495

 Score =  230 bits (587), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 145/202 (71%), Gaps = 11/202 (5%)

Query: 16  EIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLE 75
           EI FFDLET VP K G+ F +LEFGA++V P +L E+ S++TL+RP DL+++S  + R  
Sbjct: 12  EIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRRS 71

Query: 76  GITREAVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMI 135
           GITR+ V +A +F ++AD+++ IL+GR+WAGHNI RFDCVRIREAF  I   PP P   I
Sbjct: 72  GITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPKATI 131

Query: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLP 195
           DSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLE           ESS+P
Sbjct: 132 DSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLE-----------ESSVP 180

Query: 196 NTLHSKWHGSSSVMTRSRTNGK 217
           + L      S     R+R+NGK
Sbjct: 181 DILTDMSWFSPRKSPRTRSNGK 202