Miyakogusa Predicted Gene

Lj4g3v2803790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2803790.1 Non Chatacterized Hit- tr|D8RYS8|D8RYS8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.03,0.000000000001,seg,NULL; Mitofilin,Mitochondrial inner
membrane protein Mitofilin; coiled-coil,NULL,CUFF.51680.1
         (560 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39690.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   149   7e-36

>AT4G39690.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion; EXPRESSED IN: 26 plant structures;
           EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
           DOMAIN/s: Mitochondrial inner membrane protein Mitofilin
           (InterPro:IPR019133); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:18417755-18421633 FORWARD LENGTH=650
          Length = 650

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 164/338 (48%), Gaps = 23/338 (6%)

Query: 211 TETDPSKESMVQSDGIKSTEIDLSKESMVQSDGFVAIKSTETDPSKEFVVQSDGI-VGIK 269
            ET P       S+G++S +I+L  ES + SD F  I S + +  +E V+    I + I 
Sbjct: 141 VETQPQVTHSEASEGVQS-DIELQPESDLSSDRFTYISSNQEETPQETVIDRAEINLPIS 199

Query: 270 STE-SDISPRLEEEVGTQHRSTSTQASAVP-DENGIKNIQPN--HQEIE----------- 314
           ++E S   P +  E+ ++  S   +A   P D   I N Q +  H+E E           
Sbjct: 200 ASEDSGAKPDMPSEIISEAESVKLEAVPKPGDSPIIVNAQSSSVHRESETESASPKDPAA 259

Query: 315 -EIRENVLDNDIEQP-NLLEEYHLRNKSEGSPATYLHGHGFIENSTEEKEALTGAMEELK 372
            +  E+ ++ +++ P +LL+EY+L    EGS           E  T+E EA   + E LK
Sbjct: 260 LKTPEDGIEREVQLPGSLLKEYNL----EGSDTESTGSSSIGEQITKETEAFPNSTEGLK 315

Query: 373 DGYVSKDGKLVLDFLQAIHAAEKRQADLDAHVFNXXXXXXXXXXXXXXXDXXXXXXXXXX 432
           D Y+++DGKLVLDFL AIHAAEK+QA LDA VF                D          
Sbjct: 316 DSYMTEDGKLVLDFLAAIHAAEKQQAHLDAQVFAEELRALKEKYENELRDLRARELMRIE 375

Query: 433 XXXXXDXXXXXXXXXXXXXXXXXQEKMEQKLKIELDQKETEAELKLQNVQXXXXXXXXXX 492
                D                 QE+ME KLK EL+QKETEA+L L   +          
Sbjct: 376 EAAILDKELKRERTKAAAAIKAIQERMEDKLKAELEQKETEAQLALSKAEELAKAEMIST 435

Query: 493 XXXXXXXQIEKMAEANININALCMAFYARSEEARQSHA 530
                  QIEKMAEA++NI AL MAFYARSEEARQSH+
Sbjct: 436 IAKEKAAQIEKMAEADLNIKALSMAFYARSEEARQSHS 473



 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 18/115 (15%)

Query: 14  TVRRDPRYFVNQKIPSHLSSRKNFSNASKPD--GASPPG------------STGKAPESN 59
           +++R PR    Q+   HLSS +N S + K    GA P G            +     + N
Sbjct: 14  SIKRFPRNLGAQRF--HLSSSRNASTSGKNGLPGAKPVGKPDASKVDPPKVTPPPPTKGN 71

Query: 60  SSLPRFLIGSCALGAAFLATYQTGYLDKYLKKEPQSVSQKAHANATTGDLKSVQH 114
           SS  + +IG  A+  AFL  YQTGYLD+YL KE Q +S++ H++A T  L+   H
Sbjct: 72  SS--KVVIGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSERIHSDALTEKLEEAHH 124