Miyakogusa Predicted Gene

Lj4g3v2802780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2802780.1 Non Chatacterized Hit- tr|H9KDQ4|H9KDQ4_APIME
Uncharacterized protein OS=Apis mellifera
GN=LOC100578,29.57,4e-18,Putative DNA-binding (bihelical) motif
predi,DNA-binding SAP; APOPTOTIC CHROMATIN CONDENSATION
INDUC,CUFF.51676.1
         (700 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39680.2 | Symbols:  | SAP domain-containing protein | chr4:1...   278   1e-74
AT4G39680.1 | Symbols:  | SAP domain-containing protein | chr4:1...   278   1e-74

>AT4G39680.2 | Symbols:  | SAP domain-containing protein |
           chr4:18414604-18416938 REVERSE LENGTH=633
          Length = 633

 Score =  278 bits (710), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/354 (50%), Positives = 220/354 (62%), Gaps = 31/354 (8%)

Query: 241 NQVSEVNPSLGSHLKXXXXXXXXXXXXQKNELKDTIIADNVKLEEDIVRPEMVEEPSSNN 300
           NQVSEV P  G  +K            +K ELKD  IADNVKLE+++ +    +EPS+  
Sbjct: 212 NQVSEVIPVTGFEVKSDCISTDSVSNNEKIELKDNKIADNVKLEQNVNK---FQEPST-- 266

Query: 301 DIPGHDVSHSMDVGEPHKKKTPVEEXXXXXXXXXXXXXXXXEVVDY--PEKLNLDRSSGD 358
            + G   SH MDV EP ++KT V                   ++D    EKLNLDRSSGD
Sbjct: 267 -VVGE--SHPMDVEEPLEQKTSVG-GGDDSNAANADMIKENNIIDAGDSEKLNLDRSSGD 322

Query: 359 DSMEEDLPESKQYDSKFNVDELRDKGESVEVSILKEEGRTAV-VGDGLSPDRGDTHHDNE 417
           +SME D PE+KQ +S    D   DK   +E+ + KEE R  +  G G SP+       N+
Sbjct: 323 ESME-DEPETKQSES-ITSD---DKSAKIEM-LSKEESRADMDAGKGKSPE-------NK 369

Query: 418 IPPVSLVEKRK--SHDQASAGNNEPAKRQRRWNSETVKGSDQQVP-SLRPATTRKDEPIA 474
             P+   +KRK  ++DQ + GNNEPAKR RRWNS ++K  + Q+  S  P TT +   + 
Sbjct: 370 SHPLVASDKRKLPANDQEAVGNNEPAKR-RRWNSNSIKVPEAQITNSATPTTTPRSTGL- 427

Query: 475 SKGKFSRLDSSTIDDAPKERIVPPSQRAPTCSLRIDRFLRPFTLKAVQELLGKTGNVISF 534
            K  FSR DSS  +D PKER+VPPS + PT SLRIDRFLRPFTLKAVQELLGKTGNV SF
Sbjct: 428 -KRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFTLKAVQELLGKTGNVTSF 486

Query: 535 WMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPRNGGHLLVAEYVDPQEVKMKLE 588
           WMD IKTHCYV+Y SVEEA  TR AVYNLQWP NGG  L+AE+V  +EVK KLE
Sbjct: 487 WMDHIKTHCYVSYPSVEEAAATREAVYNLQWPPNGGRHLIAEFVRAEEVKEKLE 540



 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 30/33 (90%)

Query: 660 IVTLDDLFRKTSAAPRIYYLPLSEEQVAAKLAV 692
           IVTLDDLF+KT A PRIYYLPLSEEQVAAKLA 
Sbjct: 597 IVTLDDLFKKTKAIPRIYYLPLSEEQVAAKLAA 629



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 2  SSPYPILDDKPIDQWRVTELKEEXXXXXXXXXXXXDDLIKRLDQALRLERD 52
          SSP+P+LD++PID+W+VTELKEE            ++L++RLD+ALR E++
Sbjct: 3  SSPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQE 53


>AT4G39680.1 | Symbols:  | SAP domain-containing protein |
           chr4:18414604-18416938 REVERSE LENGTH=633
          Length = 633

 Score =  278 bits (710), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/354 (50%), Positives = 220/354 (62%), Gaps = 31/354 (8%)

Query: 241 NQVSEVNPSLGSHLKXXXXXXXXXXXXQKNELKDTIIADNVKLEEDIVRPEMVEEPSSNN 300
           NQVSEV P  G  +K            +K ELKD  IADNVKLE+++ +    +EPS+  
Sbjct: 212 NQVSEVIPVTGFEVKSDCISTDSVSNNEKIELKDNKIADNVKLEQNVNK---FQEPST-- 266

Query: 301 DIPGHDVSHSMDVGEPHKKKTPVEEXXXXXXXXXXXXXXXXEVVDY--PEKLNLDRSSGD 358
            + G   SH MDV EP ++KT V                   ++D    EKLNLDRSSGD
Sbjct: 267 -VVGE--SHPMDVEEPLEQKTSVG-GGDDSNAANADMIKENNIIDAGDSEKLNLDRSSGD 322

Query: 359 DSMEEDLPESKQYDSKFNVDELRDKGESVEVSILKEEGRTAV-VGDGLSPDRGDTHHDNE 417
           +SME D PE+KQ +S    D   DK   +E+ + KEE R  +  G G SP+       N+
Sbjct: 323 ESME-DEPETKQSES-ITSD---DKSAKIEM-LSKEESRADMDAGKGKSPE-------NK 369

Query: 418 IPPVSLVEKRK--SHDQASAGNNEPAKRQRRWNSETVKGSDQQVP-SLRPATTRKDEPIA 474
             P+   +KRK  ++DQ + GNNEPAKR RRWNS ++K  + Q+  S  P TT +   + 
Sbjct: 370 SHPLVASDKRKLPANDQEAVGNNEPAKR-RRWNSNSIKVPEAQITNSATPTTTPRSTGL- 427

Query: 475 SKGKFSRLDSSTIDDAPKERIVPPSQRAPTCSLRIDRFLRPFTLKAVQELLGKTGNVISF 534
            K  FSR DSS  +D PKER+VPPS + PT SLRIDRFLRPFTLKAVQELLGKTGNV SF
Sbjct: 428 -KRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFTLKAVQELLGKTGNVTSF 486

Query: 535 WMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPRNGGHLLVAEYVDPQEVKMKLE 588
           WMD IKTHCYV+Y SVEEA  TR AVYNLQWP NGG  L+AE+V  +EVK KLE
Sbjct: 487 WMDHIKTHCYVSYPSVEEAAATREAVYNLQWPPNGGRHLIAEFVRAEEVKEKLE 540



 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 30/33 (90%)

Query: 660 IVTLDDLFRKTSAAPRIYYLPLSEEQVAAKLAV 692
           IVTLDDLF+KT A PRIYYLPLSEEQVAAKLA 
Sbjct: 597 IVTLDDLFKKTKAIPRIYYLPLSEEQVAAKLAA 629



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 38/51 (74%)

Query: 2  SSPYPILDDKPIDQWRVTELKEEXXXXXXXXXXXXDDLIKRLDQALRLERD 52
          SSP+P+LD++PID+W+VTELKEE            ++L++RLD+ALR E++
Sbjct: 3  SSPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQE 53