Miyakogusa Predicted Gene

Lj4g3v2788040.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2788040.1 tr|B9H5K5|B9H5K5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_760199 PE=4
SV=1,39.31,5e-19,seg,NULL,CUFF.51638.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64820.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    70   7e-13
AT1G16850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   1e-09

>AT5G64820.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits
           to 1807 proteins in 277 species: Archae - 0; Bacteria -
           0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
           0; Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:25913999-25914523 REVERSE LENGTH=145
          Length = 145

 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 47  EKPLLSKVLLDTISLLRKSHKSSWEKIKTVIHDLQMQFSPPNLDFRGGGETEH------- 99
           E P + K++        K   SSWE I+  +  +QM+  PPNLDFR   +  +       
Sbjct: 39  ENPSIVKIISGIFG--NKFPPSSWELIQGAMQKIQMKLYPPNLDFRSNSDKSNIEEEDKA 96

Query: 100 -DVKEAVGKSFDRSKETVEETAKSAANVVGEAIHKTTEKVKEGT 142
             V+EA  +S + SKE +EE+AK A +VVGE + KT EKV + T
Sbjct: 97  EKVREAATRSLEVSKEAIEESAKLAGDVVGEVVQKTAEKVTKQT 140


>AT1G16850.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: response to
           salt stress; LOCATED IN: endomembrane system; EXPRESSED
           IN: leaf apex, leaf whorl, male gametophyte, flower,
           leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04
           four leaves visible, LP.10 ten leaves visible, petal
           differentiation and expansion stage, LP.08 eight leaves
           visible; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to
           24 proteins in 6 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:5765062-5765618 REVERSE LENGTH=152
          Length = 152

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 38  NVAQDQDHPEKPLLSKVLLDTISL--LRKSHKSSWEKIKTVIHDLQMQFSPPNLDFRGGG 95
           NV+ D D  E+ + S+    T+ L  +++S K+ W K++  +   Q  F PPN  F G  
Sbjct: 29  NVSADVDS-ERAVPSEDKTTTVWLTKIKRSGKNYWAKVRETLDRGQSHFFPPNTYFTGKN 87

Query: 96  ETE----HDVKEAVGKSFDRSKETVEETAKSAANVVGEAIHKTTEKVK 139
           +       ++KEA  +SF+ SK TVEE A+SAA VV +      EKVK
Sbjct: 88  DAPMGAGENMKEAATRSFEHSKATVEEAARSAAEVVSDTAEAVKEKVK 135