Miyakogusa Predicted Gene

Lj4g3v2787010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2787010.1 tr|Q9LS83|Q9LS83_ARATH Similarity to Ac-like
transposase OS=Arabidopsis thaliana PE=4 SV=1,38.64,1e-18,Ribonuclease
H-like,Ribonuclease H-like domain; SUBFAMILY NOT NAMED,NULL; BED
FINGER-RELATED,NULL,CUFF.51640.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    86   1e-17

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 24  PQMKRPRTLQGLKNHNVGGVERKIDQKVVHEFIAQMVTEHDLPCEFVEWNGFQALTKYIS 83
           P+   PR  +  ++ N        +Q    + IA+M+  HD P   V+  GF     ++ 
Sbjct: 139 PKTDTPR--RRYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYPLHMVQHPGF---VSFVQ 193

Query: 84  SDQAQCVSNSRDYVAADVMRVYLLEKQKLKRELASVRGRLCLTLRHWTSEAAHGDFTLTA 143
           S Q    + S + V  D +  YL EKQ + + L  + GR CLTL  WTS+   G   +TA
Sbjct: 194 SIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITA 253

Query: 144 HYVDEDWKLNAKLLNFGHMAPPHSDFLLH-PMMNC 177
           HY+D DWK+  KLLN    + P +D  L   + NC
Sbjct: 254 HYIDSDWKIQKKLLNVLMESYPEADEALSLAVANC 288