Miyakogusa Predicted Gene
- Lj4g3v2787000.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2787000.1 tr|D3TN66|D3TN66_GLOMM GTP-binding protein SEC4
OS=Glossina morsitans morsitans PE=2 SV=1,29.58,9e-19,RAB,NULL;
seg,NULL; SIGMA54_INTERACT_1,Sigma-54 interaction domain, ATP-binding
site 1; Rab subfamil,CUFF.51642.1
(339 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding fami... 390 e-109
AT5G09910.1 | Symbols: | Ras-related small GTP-binding family p... 338 4e-93
AT1G43890.3 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C... 68 1e-11
AT1G43890.2 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C... 68 1e-11
AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C... 68 1e-11
AT1G49300.2 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase hom... 62 4e-10
AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase hom... 62 4e-10
AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, R... 62 8e-10
AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B |... 61 1e-09
AT4G09720.1 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A... 60 3e-09
AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D... 59 5e-09
AT3G16100.1 | Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase ho... 59 7e-09
AT1G22740.1 | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPas... 58 9e-09
AT4G09720.4 | Symbols: RABG3A | RAB GTPase homolog G3A | chr4:61... 57 1e-08
AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A... 57 2e-08
AT2G21880.1 | Symbols: ATRAB7A, ATRABG2, RAB7A | RAB GTPase homo... 57 2e-08
AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB G... 57 2e-08
AT5G64990.1 | Symbols: AtRABH1a, RABH1a | RAB GTPase homolog H1A... 56 3e-08
AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, R... 55 5e-08
AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4D... 55 6e-08
AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase hom... 55 7e-08
AT3G53610.3 | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 | chr... 54 1e-07
AT3G53610.2 | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 | chr... 54 1e-07
AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GTP... 54 1e-07
AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A... 54 2e-07
AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 | ... 54 2e-07
AT5G59840.1 | Symbols: | Ras-related small GTP-binding family p... 53 3e-07
AT3G46060.3 | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917... 53 3e-07
AT3G46060.2 | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917... 53 3e-07
AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A | R... 53 3e-07
AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A... 53 4e-07
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, A... 52 4e-07
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, A... 52 5e-07
AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, R... 52 5e-07
AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog A1E... 52 5e-07
AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d | RAB... 52 8e-07
AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5D... 52 8e-07
AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase ... 51 9e-07
AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small... 51 9e-07
AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1G... 51 1e-06
AT3G54840.1 | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-relat... 51 1e-06
AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase homo... 51 1e-06
AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog A6B... 51 1e-06
AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RA... 51 1e-06
AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1C... 50 2e-06
AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase hom... 50 2e-06
AT1G09630.1 | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, R... 50 2e-06
AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase hom... 50 2e-06
AT3G54840.2 | Symbols: ARA6, RABF1 | Ras-related small GTP-bindi... 50 2e-06
AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F... 50 3e-06
AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A | chr5:25... 49 3e-06
AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E | ... 49 4e-06
AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-rel... 49 6e-06
AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5B... 48 8e-06
>AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding family
protein | chr5:25910836-25912625 FORWARD LENGTH=342
Length = 342
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/343 (61%), Positives = 233/343 (67%), Gaps = 8/343 (2%)
Query: 2 FWRDRERESNKELNGGVLCGQVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDV 61
FWR+RERE NKE LCGQVRVLVVGDSGVGKTSLVHLI KGS + RP QTIGCTV V
Sbjct: 3 FWRERERE-NKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGV 61
Query: 62 KHTTYGNXXXXXXXXXXXXERNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRR 121
KH TYG+ ER+FFVELWDVSGHERY+DCRSLFYSQINGVIFVHDLSQRR
Sbjct: 62 KHITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 121
Query: 122 TKTSLQKWAAEISATGTFSAXXXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVA 181
TKTSLQKWA+E++ATGTFSA YIV+GNKADIAAKEG +GSSGNLVD A
Sbjct: 122 TKTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAA 181
Query: 182 RQWVEKQGXXXXXXXXXXX-XXXXGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDEL 240
R WVEKQG G+GGLIAAAKE RYDKE + KFFRMLIRRRYFSDEL
Sbjct: 182 RHWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDEL 241
Query: 241 PEPA-WSIPSVQRPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKY-NMLPPLPAQRNXXXX 298
P + WSI V + QR+D+ DD+Q Y R S DP+KY N +PPLPAQRN
Sbjct: 242 PAASPWSISPVPTSSSQRLDE-ITSDDDQFYK-RTSFHGDPYKYNNTIPPLPAQRNLTPP 299
Query: 299 XXXXXXXXVSVSENYSFPRFXXXXXXXXXX--XARTKRSDINV 339
VS +NY+ PR+ AR+KR DINV
Sbjct: 300 PTLYPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
>AT5G09910.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:3093272-3094932 FORWARD LENGTH=333
Length = 333
Score = 338 bits (866), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 190/341 (55%), Positives = 209/341 (61%), Gaps = 13/341 (3%)
Query: 2 FWRDRERESNKELNGGVLCGQVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDV 61
FWR+R RE NKE LCGQ+RVLVVGDSGVGK+SLVHLIVKGS + RP QTIGCTV V
Sbjct: 3 FWRERGRE-NKEHMVAPLCGQIRVLVVGDSGVGKSSLVHLIVKGSSIVRPSQTIGCTVGV 61
Query: 62 KHTTYGNXXXXXXXXXXXXERNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRR 121
KH TY + ER+FFVELWDVSGHERY+DCRSLFYSQINGVIFVHDLSQR
Sbjct: 62 KHLTYASPASSSSIIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRT 121
Query: 122 TKTSLQKWAAEISATGTFSAXXXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVA 181
TKT+LQKWA E+S TG FSA YIVIGNKADIAAK G GSSGNLVD A
Sbjct: 122 TKTNLQKWAGEVSVTGEFSAPLSSGGPGGLPVPYIVIGNKADIAAKGGTNGSSGNLVDAA 181
Query: 182 RQWVEKQGXXXXXXXXXXXXXXXGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELP 241
R WVEKQG + GLI AAKEARYDKE + K F MLIRRRYFSDELP
Sbjct: 182 RHWVEKQGLLPHSDELPLSESFPSNVGLIMAAKEARYDKEALTKIFHMLIRRRYFSDELP 241
Query: 242 EP--AWSIPSVQRPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKYNMLPPLPAQRNXXXXX 299
P AWS+ QR+D+ D++Q Y D +KYN LP Q N
Sbjct: 242 SPSSAWSL---SHAPSQRLDEG-TSDEDQFYKRTSLREGDAYKYNTLP----QHNLMQSP 293
Query: 300 XXXXXXXVSVSENYSFPRFXXXXXXXXXX-XARTKRSDINV 339
NY+ PRF R+KR DINV
Sbjct: 294 TLYPQQPPD-RYNYAIPRFSLSSVEETSNGNGRSKRMDINV 333
>AT1G43890.3 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
FORWARD LENGTH=212
Length = 212
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+VL++GDSGVGK+SL+ L + TIG VK+ T G E+
Sbjct: 15 KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WAAEISATGTFSAX 142
+ +WD +G ER++ S +Y G+I V+D+++R T T+L WA EI T
Sbjct: 61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYST---- 116
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQW 184
+++GNK D ++ + G +D AR++
Sbjct: 117 -------NQDCIKMLVGNKVDKESERAVSKKEG--IDFAREY 149
>AT1G43890.2 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
FORWARD LENGTH=212
Length = 212
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+VL++GDSGVGK+SL+ L + TIG VK+ T G E+
Sbjct: 15 KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WAAEISATGTFSAX 142
+ +WD +G ER++ S +Y G+I V+D+++R T T+L WA EI T
Sbjct: 61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYST---- 116
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQW 184
+++GNK D ++ + G +D AR++
Sbjct: 117 -------NQDCIKMLVGNKVDKESERAVSKKEG--IDFAREY 149
>AT1G43890.1 | Symbols: ATRAB18, ATRABC1, RAB18-1, RABC1, ATRAB-C1,
RAB18 | RAB GTPASE HOMOLOG B18 | chr1:16646934-16648395
FORWARD LENGTH=212
Length = 212
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+VL++GDSGVGK+SL+ L + TIG VK+ T G E+
Sbjct: 15 KVLLIGDSGVGKSSLL-LSFTSNTFDDLSPTIGVDFKVKYLTIG-------------EKK 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WAAEISATGTFSAX 142
+ +WD +G ER++ S +Y G+I V+D+++R T T+L WA EI T
Sbjct: 61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYST---- 116
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQW 184
+++GNK D ++ + G +D AR++
Sbjct: 117 -------NQDCIKMLVGNKVDKESERAVSKKEG--IDFAREY 149
>AT1G49300.2 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase
homolog G3E | chr1:18234842-18236968 FORWARD LENGTH=206
Length = 206
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
F +++WD +G ER+Q FY + + V+D++ ++ L W E + S
Sbjct: 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVD--VARQWVEKQG 189
++VIGNK D + G S +V AR W +G
Sbjct: 114 ------DPENFPFVVIGNKID------VDGGSSRVVSEKKARAWCASKG 150
>AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase
homolog G3E | chr1:18234842-18236968 FORWARD LENGTH=206
Length = 206
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
F +++WD +G ER+Q FY + + V+D++ ++ L W E + S
Sbjct: 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVD--VARQWVEKQG 189
++VIGNK D + G S +V AR W +G
Sbjct: 114 ------DPENFPFVVIGNKID------VDGGSSRVVSEKKARAWCASKG 150
>AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A,
RABC2A | RAB GTPase homolog C2A | chr5:885741-887061
REVERSE LENGTH=210
Length = 210
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
++L++GDSGVGK+SL+ + S V TIG +K T G +
Sbjct: 15 KILLIGDSGVGKSSLLVSFIS-SSVEDLAPTIGVDFKIKQLTVGG-------------KR 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWAAEISATGTFSAX 142
+ +WD +G ER++ S +Y G+I V+D+++R T T+L W EI T
Sbjct: 61 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYST---- 116
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
+++GNK D ++ G+ G
Sbjct: 117 -------NQECVRMLVGNKVDRESERGVSREEG 142
>AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B |
RAB GTPase homolog G3F | chr3:6484266-6486005 FORWARD
LENGTH=206
Length = 206
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K + +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-------------EDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
F +++WD +G ER+Q FY + + V+D++ ++ +L W E + S
Sbjct: 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
+++IGNK D+
Sbjct: 114 ------DPENFPFVLIGNKVDV 129
>AT4G09720.1 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A |
chr4:6133101-6134959 FORWARD LENGTH=206
Length = 206
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+V+GDSGVGKTSL++ V + + TIG K G E+
Sbjct: 9 LKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIG-------------EK 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER+Q + FY + V+D++ R+ +L+ W E + S
Sbjct: 56 LVTLQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
+IV+GNK D+
Sbjct: 114 ------DPKTFPFIVLGNKIDV 129
>AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D |
chr1:19468150-19469449 REVERSE LENGTH=206
Length = 206
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQI-------------DDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
F +++WD +G ER+Q FY + + V+D++ ++ +L W E + S
Sbjct: 56 IFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
++V+GNK D+
Sbjct: 114 ------DPENFPFVVLGNKTDV 129
>AT3G16100.1 | Symbols: ATRABG3C, ATRAB7D, RABG3c | RAB GTPase
homolog G3C | chr3:5459270-5460556 FORWARD LENGTH=206
Length = 206
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQI-------------DDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
F +++WD +G ER+Q FY + + V+D++ ++ +L W E + S
Sbjct: 56 IFTLQIWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPS-- 113
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
++V+GNK D+
Sbjct: 114 ------DPENFPFVVLGNKTDV 129
>AT1G22740.1 | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPase
homolog G3B | chr1:8049247-8050494 FORWARD LENGTH=203
Length = 203
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+++GDSGVGKTSL++ V + + TIG K +R
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKEL-------------QIDDR 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER+Q FY + + V+D++ ++ SL W E +
Sbjct: 56 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRAS---- 111
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVD--VARQWVEKQG 189
+I++GNK D I G + +V AR+W ++G
Sbjct: 112 ----PRDPMAFPFILLGNKVD------IDGGNSRVVSEKKAREWCAEKG 150
>AT4G09720.4 | Symbols: RABG3A | RAB GTPase homolog G3A |
chr4:6133101-6134959 FORWARD LENGTH=211
Length = 211
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+V+GDSGVGKTSL++ V + + TIG K G E+
Sbjct: 9 LKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIG-------------EK 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER+Q + FY + V+D++ R+ +L+ W E +
Sbjct: 56 LVTLQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQ---AWN 112
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
+IV+GNK D+
Sbjct: 113 IGMCPSDPKTFPFIVLGNKIDV 134
>AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A |
chr4:6133101-6134959 FORWARD LENGTH=217
Length = 217
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+V+GDSGVGKTSL++ V + + TIG K G E+
Sbjct: 9 LKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIG-------------EK 55
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATG---TF 139
+++WD +G ER+Q + FY + V+D++ R+ +L+ W E
Sbjct: 56 LVTLQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQAWNIGM 115
Query: 140 SAXXXXXXXXXXXXXYIVIGNKADI 164
+IV+GNK D+
Sbjct: 116 WTIAEASPSDPKTFPFIVLGNKIDV 140
>AT2G21880.1 | Symbols: ATRAB7A, ATRABG2, RAB7A | RAB GTPase homolog
7A | chr2:9324899-9326170 REVERSE LENGTH=212
Length = 212
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
++V+V+GDSGVGKTSL++ V + + TIG K E+
Sbjct: 10 LKVIVLGDSGVGKTSLMNQYVYKKFNKQYKATIGADFVTKEL-------------HIDEK 56
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+ +++WD +G ER+Q + FY + + V+D++ ++ +L W E
Sbjct: 57 SVTLQIWDTAGQERFQSLGAAFYRGADCCVLVYDVNNLKSFETLNNWHTEF--------L 108
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
+++IGNK D+
Sbjct: 109 KQANPMEPETFPFVLIGNKTDV 130
>AT4G39990.1 | Symbols: ATRABA4B, ATRAB11G, ATGB3, RABA4B | RAB
GTPase homolog A4B | chr4:18542722-18543779 FORWARD
LENGTH=224
Length = 224
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 31/166 (18%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDS VGK+ L+ + + TIG + + +++
Sbjct: 19 KVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSI-------------EQKS 65
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++R T + +W E+ A
Sbjct: 66 IKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHA------ 119
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQG 189
I+IGNK+D+ + + + A+++ EK+G
Sbjct: 120 ------DKNIVIILIGNKSDLEDQRAVP------TEDAKEFAEKEG 153
>AT5G64990.1 | Symbols: AtRABH1a, RABH1a | RAB GTPase homolog H1A |
chr5:25963562-25964792 REVERSE LENGTH=206
Length = 206
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 27/153 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++ +GD GVGKTS++ + G T Q TIG K T Y +R
Sbjct: 9 KLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRY-------------EDRT 55
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISAT-GTFSAX 142
F ++LWD +G ER++ + + + V+D++ +++ + KW E+ A G++
Sbjct: 56 FRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSY--- 112
Query: 143 XXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
+++GNK D+ K + G
Sbjct: 113 ----------VIIVLVGNKTDLVNKRQVSIEEG 135
>AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5
| RAS 5 | chr1:400350-401788 REVERSE LENGTH=203
Length = 203
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 25/147 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
++L++GDSGVGK+ L+ S V TIG VD K T +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFSDDSYVESYISTIG--VDFKIRT-----------VEQDGKT 56
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
+++WD +G ER++ S +Y +G+I V+D++ + ++++W +EI + +
Sbjct: 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNK 116
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGI 170
+++GNK+D+ I
Sbjct: 117 ------------LLVGNKSDLTENRAI 131
>AT3G12160.1 | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4D |
chr3:3879495-3880437 REVERSE LENGTH=222
Length = 222
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDS VGKT L+ + + TIG K N +
Sbjct: 17 KVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDN-------------KT 63
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++R++ + KW E+
Sbjct: 64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRG-------- 115
Query: 144 XXXXXXXXXXXYIVIGNKADIAA 166
++IGNK D+ +
Sbjct: 116 ----HADKNIVIMLIGNKCDLGS 134
>AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase
homolog A3 | chr1:86715-88145 REVERSE LENGTH=237
Length = 237
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 25/142 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+V+GDS VGKT L+ + TIG + T
Sbjct: 30 KVVVIGDSAVGKTQLLSRFTHNEFCYDSKSTIGVEFQTRTITLRGKLVK----------- 78
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++R + + +W E+ A SA
Sbjct: 79 --AQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVARWVEELRAHADDSA-- 134
Query: 144 XXXXXXXXXXXYIVIGNKADIA 165
+++GNKAD++
Sbjct: 135 ----------VIMLVGNKADLS 146
>AT3G53610.3 | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 |
chr3:19876531-19878264 REVERSE LENGTH=216
Length = 216
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + S
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT3G53610.2 | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 |
chr3:19876531-19878264 REVERSE LENGTH=216
Length = 216
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + S
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GTPase
homolog 8 | chr3:19876531-19878264 REVERSE LENGTH=216
Length = 216
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + S
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A |
chr5:26083437-26084550 FORWARD LENGTH=226
Length = 226
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 31/166 (18%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDS VGK+ ++ + + TIG + + ++
Sbjct: 19 KVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDH-------------KS 65
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++R+T + +W E+ A
Sbjct: 66 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRA-------- 117
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQG 189
I+IGNK+D+ + I + A+++ EK+G
Sbjct: 118 ----HADKNIVIILIGNKSDLVDQRAIP------TEDAKEFAEKEG 153
>AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 |
chr5:15864166-15865782 REVERSE LENGTH=204
Length = 204
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 31/167 (18%)
Query: 22 QVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXE 81
+++++++GDSGVGKTSL+ TI + K E
Sbjct: 5 KLKIILLGDSGVGKTSLLKRYNDKDFKQLHNSTIYVDLVTKEICIA-------------E 51
Query: 82 RNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSA 141
R +++WD +G ER++ S FY + + V+D++ +T S+ W E
Sbjct: 52 RQVILQIWDTAGQERFKSLPSRFYRDTDCCVLVYDVNTLKTFESIDNWHDEFIKQAN--- 108
Query: 142 XXXXXXXXXXXXXYIVIGNKAD-------IAAKEGIR---GSSGNLV 178
++++GNK D + AKE GS GN+V
Sbjct: 109 -----PETPTKFPFVLMGNKTDVNNGKPRVVAKEIADQWCGSKGNIV 150
>AT5G59840.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:24107450-24109049 REVERSE LENGTH=216
Length = 216
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + +
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT3G46060.3 | Symbols: ARA3 | RAB GTPase homolog 8A |
chr3:16917908-16919740 FORWARD LENGTH=216
Length = 216
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + +
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT3G46060.2 | Symbols: ARA3 | RAB GTPase homolog 8A |
chr3:16917908-16919740 FORWARD LENGTH=216
Length = 216
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + +
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A | RAB
GTPase homolog 8A | chr3:16917908-16919740 FORWARD
LENGTH=216
Length = 216
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 23 VRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXER 82
+++L++GDSGVGK+ L+ GS T TIG +D K T +
Sbjct: 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--IDFKIRTI-----------ELDGK 62
Query: 83 NFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAX 142
+++WD +G ER++ + +Y G++ V+D++ + +++ W I + +
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 143 XXXXXXXXXXXXYIVIGNKADI 164
I++GNKAD+
Sbjct: 123 K------------ILVGNKADM 132
>AT5G47520.1 | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A |
chr5:19277596-19278366 REVERSE LENGTH=221
Length = 221
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDS VGK++L+ + + TIG + +
Sbjct: 16 KIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING-------------KE 62
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ER++ S +Y G + V+D+S+R+T S+ +W E+ +
Sbjct: 63 IKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFHSIGRWLNELHTHSDMNVVT 122
Query: 144 XXXXXXXXXXXYIVIGNKADI 164
I++GNK+D+
Sbjct: 123 ------------ILVGNKSDL 131
>AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 |
chr5:18244495-18246060 FORWARD LENGTH=200
Length = 200
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 11 NKELNGGVLCGQVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXX 70
NK +N +++++GD G GK+SLV VK V + TIG + +
Sbjct: 6 NKNINA-------KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 58
Query: 71 XXXXXXXXXXERNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWA 130
E+WD +G ERY ++Y I V D++ + + +KW
Sbjct: 59 VK-------------FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWV 105
Query: 131 AEISATG 137
E+ A G
Sbjct: 106 QELQAQG 112
>AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding
family protein | chr4:10687441-10689449 REVERSE
LENGTH=200
Length = 200
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 11 NKELNGGVLCGQVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXX 70
NK +N +++++GD G GK+SLV VK V + TIG + +
Sbjct: 6 NKSINA-------KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 58
Query: 71 XXXXXXXXXXERNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWA 130
E+WD +G ERY ++Y I V D++ + + +KW
Sbjct: 59 VK-------------FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWV 105
Query: 131 AEISATG 137
E+ A G
Sbjct: 106 QELQAQG 112
>AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C,
RABA2c | RAB GTPase homolog A2C | chr3:17246699-17248362
REVERSE LENGTH=217
Length = 217
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDSGVGK++++ + + TIG + T +
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTT-------------QVEGKT 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++R+T ++ +W E+
Sbjct: 61 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 110
>AT4G18430.1 | Symbols: AtRABA1e, RABA1e | RAB GTPase homolog A1E |
chr4:10183903-10185223 REVERSE LENGTH=217
Length = 217
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDSGVGK++L+ + + TIG + E+
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSV-------------HVDEKI 61
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
+LWD +G ERY+ S +Y G + V+D+++ T ++++W E+
Sbjct: 62 IKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKEL---------- 111
Query: 144 XXXXXXXXXXXYIVIGNKADI 164
+++GNKAD+
Sbjct: 112 --RDHTDANVVIMLVGNKADL 130
>AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d | RAB
GTPase homolog A1D | chr4:10320156-10321339 REVERSE
LENGTH=214
Length = 214
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ + + TIG + E+
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVN-------------EKV 61
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++ T ++++W E+
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLREL 111
>AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5D |
chr2:13473781-13474957 REVERSE LENGTH=219
Length = 219
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 53/246 (21%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDS VGK++L+ + + TIG ++ +
Sbjct: 14 KIVIIGDSAVGKSNLLSRYARNEFNAHSKATIGVEFQTQNMEIEG-------------KE 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ER++ S +Y G + V+D+S+R T S+ +W E+ +
Sbjct: 61 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRSTFESVGRWLDELKTHSDTTVAR 120
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQGXXXXXXXXXXXXXX 203
+++GNK D+ E IR S V+ + E +G
Sbjct: 121 ------------MLVGNKCDL---ESIRAVS---VEEGKALAETEG-------------- 148
Query: 204 XGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELPEPAWSIPSVQRPAQQRIDDSFI 263
+ + + D V F M+IR Y + + + + R+ S +
Sbjct: 149 ------LFFMETSALDSTNVKTAFEMVIRDIYTNISRKQLNSDTYKTELSMKNRV--SLV 200
Query: 264 EDDNQS 269
+DDN+S
Sbjct: 201 KDDNKS 206
>AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase
homolog A2D | chr5:23876858-23878244 FORWARD LENGTH=217
Length = 217
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDSGVGKT+++ + + TIG + +
Sbjct: 14 KIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATR-------------TLQVEGKT 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++R+T ++ +W E+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 110
>AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small
GTP-binding family protein | chr3:3709490-3711397
REVERSE LENGTH=205
Length = 205
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
++L++GDS VGK+ L+ + + TIG VD K T +
Sbjct: 10 KLLLIGDSSVGKSCLLLRFADDAYIDSYISTIG--VDFKIRTI-----------EQDGKT 56
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
+++WD +G ER++ S +Y +G+I V+D ++ + ++++W +EI S
Sbjct: 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCK 116
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
++IGNK D+ + + +G
Sbjct: 117 ------------LLIGNKNDMVESKVVSTETG 136
>AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1G |
chr3:5069239-5070025 FORWARD LENGTH=217
Length = 217
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ + + TIG + E+
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-------------SIHVDEKI 61
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++ T ++++W E+
Sbjct: 62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL---------- 111
Query: 144 XXXXXXXXXXXYIVIGNKADI 164
+++GNKAD+
Sbjct: 112 --RDHTEANIVIMLVGNKADL 130
>AT3G54840.1 | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-related
small GTP-binding family protein |
chr3:20318597-20320782 FORWARD LENGTH=202
Length = 202
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 22 QVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXE 81
+V+++++GDSGVGK+ +V V+G + T+G + + +
Sbjct: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVK-------- 84
Query: 82 RNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSA 141
E+WD +G ERY L+Y + V+D++ + Q W E+ G+
Sbjct: 85 ----FEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGS--- 137
Query: 142 XXXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
++GNKAD+ K + G
Sbjct: 138 ---------PDIVMALVGNKADLHEKREVPTEDG 162
>AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase homolog
A1B | chr1:5787489-5789147 REVERSE LENGTH=216
Length = 216
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ K + TIG +
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVK----------- 63
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++R T ++ +W E+
Sbjct: 64 --AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKEL 111
>AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog A6B |
chr1:6265416-6266659 REVERSE LENGTH=229
Length = 229
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+ +++GDS VGK++L+ + + TIG ++ G+ +
Sbjct: 15 KAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVDFAYRNVRVGD-------------KT 61
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ER++ S +Y G + ++D+++R T +++KW +E+ FS+
Sbjct: 62 IKAQIWDTAGQERFRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRG---FSSPE 118
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
+++GNK+D+ + G
Sbjct: 119 TVV---------VLVGNKSDLGQSREVEEEEG 141
>AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB
GTPase homolog A2B | chr1:2276270-2277154 FORWARD
LENGTH=214
Length = 214
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDSGVGK++++ + + TIG + +
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-------------TLQVEGKT 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++R+T ++ +W E+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLREL 110
>AT5G45750.1 | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1C |
chr5:18559318-18560639 FORWARD LENGTH=216
Length = 216
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ K + TIG + ++
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATR-------------SLNVDDKV 61
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++ T +++ W E+
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKEL 111
>AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase
homolog 1C | chr4:9773721-9775424 REVERSE LENGTH=202
Length = 202
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 25/145 (17%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
++L++GDSGVGK+ L+ S + TIG VD K T +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG--VDFKIRT-----------VEQDGKT 56
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
+++WD +G ER++ S +Y +G+I +D++ + ++++W EI + +
Sbjct: 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNK 116
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKE 168
+++GNK D+ +++
Sbjct: 117 ------------LLVGNKCDLTSQK 129
>AT1G09630.1 | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A,
RAB11c | RAB GTPase 11C | chr1:3118350-3119571 REVERSE
LENGTH=217
Length = 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 31/166 (18%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ + + TIG + R
Sbjct: 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATR-------------TLQVEGRT 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ERY+ S +Y G + V+D+++ T ++ +W E+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL---------- 110
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQG 189
++IGNK D+ + + A+ + EK+G
Sbjct: 111 --RDHADSNIVIMLIGNKTDLKHLRAV------ATEDAQSYAEKEG 148
>AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase
homolog 1A | chr5:19167029-19168718 FORWARD LENGTH=202
Length = 202
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
++L++GDSGVGK+ L+ S + TIG VD K T +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG--VDFKIRT-----------VEQDGKT 56
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
+++WD +G ER++ S +Y +G+I +D++ + ++++W EI
Sbjct: 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEI 106
>AT3G54840.2 | Symbols: ARA6, RABF1 | Ras-related small GTP-binding
family protein | chr3:20318597-20320737 FORWARD
LENGTH=193
Length = 193
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 22 QVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXE 81
+V+++++GDSGVGK+ +V V+G + T+G + + +
Sbjct: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVK-------- 84
Query: 82 RNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSA 141
E+WD +G ERY L+Y + V+D++ + Q W E+ G+
Sbjct: 85 ----FEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGS--- 137
Query: 142 XXXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
++GNKAD+ K + G
Sbjct: 138 ---------PDIVMALVGNKADLHEKREVPTEDG 162
>AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F |
chr5:24484750-24485565 FORWARD LENGTH=217
Length = 217
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+V+++GDSGVGK++L+ + + TIG + +
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVK----------- 63
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + V+D+++ T ++++W E+
Sbjct: 64 --AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL 111
>AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A |
chr5:25963562-25964792 REVERSE LENGTH=213
Length = 213
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 34/160 (21%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++ +GD GVGKTS++ + G T Q TIG K T Y +R
Sbjct: 9 KLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRY-------------EDRT 55
Query: 84 FFVELW-------DVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISAT 136
F ++LW D +G ER++ + + + V+D++ +++ + KW E+ A
Sbjct: 56 FRLQLWYKKLSLGDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAE 115
Query: 137 -GTFSAXXXXXXXXXXXXXYIVIGNKADIAAKEGIRGSSG 175
G++ +++GNK D+ K + G
Sbjct: 116 RGSY-------------VIIVLVGNKTDLVNKRQVSIEEG 142
>AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E | RAB
GTPase homolog A5E | chr1:1748314-1749350 FORWARD
LENGTH=261
Length = 261
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++V+GDS VGK++L+ + + TIG + +
Sbjct: 57 KIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEG-------------KE 103
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ER++ S +Y G + V+D+++R T S+ +W E+ +
Sbjct: 104 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVAR 163
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQG 189
+++GNK D+ E IR S V+ + E++G
Sbjct: 164 ------------MLVGNKCDL---ENIRAVS---VEEGKALAEEEG 191
>AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 |
Ras-related small GTP-binding family protein |
chr1:1951089-1952686 REVERSE LENGTH=216
Length = 216
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDSGVGK++L+ K + TIG K T
Sbjct: 15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVK----------- 63
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEI 133
++WD +G ERY+ S +Y G + ++D+++ T + +W E+
Sbjct: 64 --AQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLREL 111
>AT3G07410.1 | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5B |
chr3:2372485-2373482 REVERSE LENGTH=217
Length = 217
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 31/166 (18%)
Query: 24 RVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNXXXXXXXXXXXXERN 83
+++++GDS VGK++L+ + T + TIG + +
Sbjct: 14 KIVLIGDSAVGKSNLLSRFSRDEFDTNSKATIGVEFQTQLVEIEG-------------KE 60
Query: 84 FFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAXX 143
++WD +G ER++ S +Y G + V+D+++ T S+++W E++ +
Sbjct: 61 VKAQIWDTAGQERFRAVTSAYYRGAFGALIVYDITRGDTFESVKRWLQELNTHCDTAVAQ 120
Query: 144 XXXXXXXXXXXYIVIGNKADIAAKEGIRGSSGNLVDVARQWVEKQG 189
+++GNK D+ E IR S V+ + E++G
Sbjct: 121 ------------MLVGNKCDL---EDIRAVS---VEEGKALAEEEG 148