Miyakogusa Predicted Gene

Lj4g3v2786870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2786870.1 Non Chatacterized Hit- tr|I1NWL7|I1NWL7_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,60.76,2e-17,coiled-coil,NULL; seg,NULL,CUFF.51776.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21870.1 | Symbols: MGP1 | copper ion binding;cobalt ion bind...   296   1e-80
AT2G21870.2 | Symbols: MGP1 | copper ion binding;cobalt ion bind...   270   7e-73

>AT2G21870.1 | Symbols: MGP1 | copper ion binding;cobalt ion
           binding;zinc ion binding | chr2:9320456-9322618 REVERSE
           LENGTH=240
          Length = 240

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 187/241 (77%), Gaps = 1/241 (0%)

Query: 1   MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAPPALKGDEMLKNVFVEVKSKFET 60
           MA  +R  S+SK   G  V+LQ+++A+PVR FAKE+A P  KGDEMLK VF ++K+KF+ 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query: 61  ALGILKKEKITIAPEDPAAVSHYANVMKTVREKANLLSESQDILATIETETQDIPDARPY 120
           A+ IL+KEKIT+ PEDPAAV  YANVMKT+R+KA++ SESQ I   I+TETQDIPDAR Y
Sbjct: 61  AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query: 121 LLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKGMDLLLAEFDKINKQL 180
           LL L+EIRT++GL D+LGAEAMM +AL+KVEK++KKPLLR+DKKGMDLL+AEF+K NK+L
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query: 181 GIRKEDLPXXXXXXXXXXXXXXXXXXXXDVVEAMETQKKREEFKDEREAVDVKTLDIRNF 240
           GIRKEDLP                    D VEAME+QKK+EEF+DE E  DVK+LDIRNF
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDE-EMPDVKSLDIRNF 239

Query: 241 L 241
           +
Sbjct: 240 I 240


>AT2G21870.2 | Symbols: MGP1 | copper ion binding;cobalt ion
           binding;zinc ion binding | chr2:9320612-9322618 REVERSE
           LENGTH=220
          Length = 220

 Score =  270 bits (690), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 169/220 (76%)

Query: 1   MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAPPALKGDEMLKNVFVEVKSKFET 60
           MA  +R  S+SK   G  V+LQ+++A+PVR FAKE+A P  KGDEMLK VF ++K+KF+ 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query: 61  ALGILKKEKITIAPEDPAAVSHYANVMKTVREKANLLSESQDILATIETETQDIPDARPY 120
           A+ IL+KEKIT+ PEDPAAV  YANVMKT+R+KA++ SESQ I   I+TETQDIPDAR Y
Sbjct: 61  AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query: 121 LLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKGMDLLLAEFDKINKQL 180
           LL L+EIRT++GL D+LGAEAMM +AL+KVEK++KKPLLR+DKKGMDLL+AEF+K NK+L
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query: 181 GIRKEDLPXXXXXXXXXXXXXXXXXXXXDVVEAMETQKKR 220
           GIRKEDLP                    D VEAME+QKK+
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKK 220