Miyakogusa Predicted Gene

Lj4g3v2785730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2785730.1 tr|Q9FJA9|Q9FJA9_ARATH Emb|CAB86890.1
OS=Arabidopsis thaliana PE=4 SV=1,70.59,0.00003,coiled-coil,NULL;
seg,NULL,CUFF.51629.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52860.1 | Symbols:  | unknown protein; Has 86 Blast hits to ...   113   3e-26

>AT3G52860.1 | Symbols:  | unknown protein; Has 86 Blast hits to 86
           proteins in 36 species: Archae - 0; Bacteria - 2;
           Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0;
           Other Eukaryotes - 4 (source: NCBI BLink). |
           chr3:19591998-19592741 REVERSE LENGTH=156
          Length = 156

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 27  DDMVSCVMXXXXXXXXXXXXXXXQAIDRSPHPSHQIDVDKHARDFMEAAKKLQLYFISLQ 86
           +D+++CV                QAIDRSPHPSHQIDV++HARDFMEAAKKLQLYF+ L+
Sbjct: 39  EDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLK 98

Query: 87  REDK-PTKAEMLRKEIALMEDELDRKTELIKKQENLIQE 124
           RED+ P++AE L+K+IA+ME+EL  K ELIKK   L QE
Sbjct: 99  REDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQE 137