Miyakogusa Predicted Gene
- Lj4g3v2775580.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2775580.2 tr|G7LC87|G7LC87_MEDTR RNA-binding protein
OS=Medicago truncatula GN=MTR_8g092550 PE=4 SV=1,87.4,0,seg,NULL; RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; RR,CUFF.51635.2
(271 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 284 5e-77
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 234 4e-62
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 234 4e-62
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 233 1e-61
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 66 2e-11
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 3e-10
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 62 4e-10
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 59 4e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 5e-09
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 5e-09
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 58 8e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 9e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 9e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 57 9e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact... 57 1e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 2e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 2e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 2e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 56 3e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 53 2e-07
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 53 2e-07
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 53 3e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 53 3e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 53 3e-07
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 53 3e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 3e-07
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 52 4e-07
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 52 4e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 52 4e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 52 6e-07
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 51 8e-07
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 51 9e-07
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 50 1e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 50 2e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 49 3e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 49 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 7e-06
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 47 1e-05
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 284 bits (726), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 180/260 (69%), Gaps = 18/260 (6%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDRNSRRSKGVGYIEFYD MSVPMAIALSGQL LGQPVMVKPSEAEKNL
Sbjct: 201 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGT 260
Query: 61 XXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH 120
DRKLYVGNLHFNM+E QLR+IFE FGPVE+VQLPLD E+G CKGFGF+QF
Sbjct: 261 GPA-----DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQ 315
Query: 121 LEHAKAAQ-SLNGKLEIAGRTIKVSSVTDHVGSQXXX-XXXXXXXXXEGGLTLNAQSRAL 178
LEH+KAAQ +LNGKLEIAGRTIKVSSV+DH+G+Q GGL LNAQSRA+
Sbjct: 316 LEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAM 375
Query: 179 LMQRLAGADISTSV----GVPMVNGSVPVQPAFSLPIGNPGILPGQVLPAQXX-XXXXXX 233
LMQ+L + I+TS+ GVP +NG+ AF+ P NP P VLP
Sbjct: 376 LMQKLDRSGIATSIVGSLGVPGLNGA-----AFNQPGMNPS-FPTSVLPTTAIPSFVNEH 429
Query: 234 XXXXSECLLLKNMFDPSTEV 253
SECLLLKNMFDP+TE
Sbjct: 430 VGLPSECLLLKNMFDPATET 449
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 169/276 (61%), Gaps = 26/276 (9%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDR SRRS+G+GY+EFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNL
Sbjct: 215 MDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAG 274
Query: 61 XXXX-XXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA 119
R+LYVGNLH NM+E LR++FE FG VE+VQ+P D E+G CKGFGFVQFA
Sbjct: 275 GMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFA 333
Query: 120 HLEHAKAAQSLNGKLEIAGRTIKVSSVTDHV---GSQXXXXXXXXXXXXEGGLTLNAQSR 176
LE A+ A +LNG+LEIAGR IKVS+VTD + GGL+LNAQSR
Sbjct: 334 RLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSR 393
Query: 177 ALLMQRLAGADISTSVGVPMV---NGSVPVQPAFSLP------------IGNPGILPGQV 221
ALLMQ+L + ++S G+ NG V + + P + GI+PG V
Sbjct: 394 ALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPG-V 452
Query: 222 LPAQXXXXXXXXXXXXSECLLLKNMFDPSTEVCDEM 257
+PA SECLLLKNMFDPSTE D+
Sbjct: 453 IPA-----GFDPIGVPSECLLLKNMFDPSTETEDDF 483
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 169/276 (61%), Gaps = 26/276 (9%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDR SRRS+G+GY+EFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNL
Sbjct: 264 MDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAG 323
Query: 61 XXXX-XXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA 119
R+LYVGNLH NM+E LR++FE FG VE+VQ+P D E+G CKGFGFVQFA
Sbjct: 324 GMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFA 382
Query: 120 HLEHAKAAQSLNGKLEIAGRTIKVSSVTDHV---GSQXXXXXXXXXXXXEGGLTLNAQSR 176
LE A+ A +LNG+LEIAGR IKVS+VTD + GGL+LNAQSR
Sbjct: 383 RLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSR 442
Query: 177 ALLMQRLAGADISTSVGVPMV---NGSVPVQPAFSLP------------IGNPGILPGQV 221
ALLMQ+L + ++S G+ NG V + + P + GI+PG V
Sbjct: 443 ALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPG-V 501
Query: 222 LPAQXXXXXXXXXXXXSECLLLKNMFDPSTEVCDEM 257
+PA SECLLLKNMFDPSTE D+
Sbjct: 502 IPA-----GFDPIGVPSECLLLKNMFDPSTETEDDF 532
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 169/276 (61%), Gaps = 26/276 (9%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
MDR SRRS+G+GY+EFYD MSVPMAIALSGQ LLGQPVMVKPSEAEKNL
Sbjct: 253 MDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAG 312
Query: 61 XXXX-XXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA 119
R+LYVGNLH NM+E LR++FE FG VE+VQ+P D E+G CKGFGFVQFA
Sbjct: 313 GMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFA 371
Query: 120 HLEHAKAAQSLNGKLEIAGRTIKVSSVTDHV---GSQXXXXXXXXXXXXEGGLTLNAQSR 176
LE A+ A +LNG+LEIAGR IKVS+VTD + GGL+LNAQSR
Sbjct: 372 RLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSR 431
Query: 177 ALLMQRLAGADISTSVGVPMV---NGSVPVQPAFSLP------------IGNPGILPGQV 221
ALLMQ+L + ++S G+ NG V + + P + GI+PG V
Sbjct: 432 ALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPG-V 490
Query: 222 LPAQXXXXXXXXXXXXSECLLLKNMFDPSTEVCDEM 257
+PA SECLLLKNMFDPSTE D+
Sbjct: 491 IPA-----GFDPIGVPSECLLLKNMFDPSTETEDDF 521
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL++G + ++M E LRE F +G V ++ LD E+G +GFGFV F E A +A Q+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 130 LNGKLEIAGRTIKVSSVTDHV 150
L+G+ ++ GR +KV+ D
Sbjct: 101 LDGR-DLHGRVVKVNYANDRT 120
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAK-AA 127
D KL+VGNL FN+ +QL ++FE G VE+V++ D +G +GFGFV + + + AA
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 128 QSLNGKLEIAGRTIKVSS 145
Q NG E+ GR ++V++
Sbjct: 150 QQFNG-YELDGRPLRVNA 166
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
+LYVGNL + +T S+L +IF G V VQ+ D + +GFGFV +E AK A +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 131 NGKLEIAGRTIKVS 144
+I GRT+KV+
Sbjct: 177 FNSSQIGGRTVKVN 190
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS 129
R ++VGN+ ++ TE QLREI GPV +L D E+G KG+GF ++ E A +A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 130 LNGKLEIAGRTIKVSSVTDHVGS 152
EI GR ++V + G+
Sbjct: 69 NLQSYEINGRQLRVDFAENDKGT 91
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL+VG L + +S L++ F FG V + D E+G +GFGFV F+ + A A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ T+
Sbjct: 96 MDGK-ELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
KL+VG L + +S L++ F FG V + D E+G +GFGFV F+ + A A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ T+
Sbjct: 96 MDGK-ELNGRQIRVNLATER 114
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
K++VG + ++ E LRE F +G V ++ +D E+G +GF FV F E A A L
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 131 NGKLEIAGRTIKVSSVTD 148
+G+ ++ GR I+V+ T+
Sbjct: 95 DGQ-DLHGRRIRVNYATE 111
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS- 129
KL++G L + ++ LR+ F FG V ++ +D E+G +GFGFV F A AA S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ D
Sbjct: 96 MDGK-ELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS- 129
KL++G L + ++ LR+ F FG V ++ +D E+G +GFGFV F A AA S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ D
Sbjct: 96 MDGK-ELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS- 129
KL++G L + ++ LR+ F FG V ++ +D E+G +GFGFV F A AA S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ D
Sbjct: 96 MDGK-ELNGRHIRVNPANDR 114
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQS- 129
KL++G L + ++ LR+ F FG V ++ +D E+G +GFGFV F A AA S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 130 LNGKLEIAGRTIKVSSVTDH 149
++GK E+ GR I+V+ D
Sbjct: 96 MDGK-ELNGRHIRVNPANDR 114
>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
30 | chr3:20561024-20563502 FORWARD LENGTH=262
Length = 262
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L V N+ + +LRE FE FGPV V +P D SG +GF FV+F A AQ
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 132 GKLEIAGRTIKV 143
+ AGR I V
Sbjct: 109 NRRSFAGREITV 120
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
D KL+VGNL FN+ +QL ++FE G VE+V++ D +G +GFGFV + +AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 129 SLNGKLEIAGRTIKVSS 145
E GR ++V++
Sbjct: 158 QQFNGYEFEGRPLRVNA 174
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
+LYVGNL + + + L +F G V ++ D +SG KGFGFV + + KA S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 130 LNGKLEIAGRTIKVS 144
LNG ++ GR I+VS
Sbjct: 318 LNGA-DLDGRQIRVS 331
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
D KL+VGNL FN+ +QL ++FE G VE+V++ D +G +GFGFV + +AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 129 SLNGKLEIAGRTIKVSS 145
E GR ++V++
Sbjct: 158 QQFNGYEFEGRPLRVNA 174
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
+LYVGNL + + + L +F G V ++ D +SG KGFGFV + + KA S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 130 LNGKLEIAGRTIKVS 144
LNG ++ GR I+VS
Sbjct: 318 LNGA-DLDGRQIRVS 331
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ 128
D KL+VGNL FN+ +QL ++FE G VE+V++ D +G +GFGFV + +AA
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 129 SLNGKLEIAGRTIKVSS 145
E GR ++V++
Sbjct: 158 QQFNGYEFEGRPLRVNA 174
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
+LYVGNL + + + L +F G V ++ D +SG KGFGFV + + KA S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 130 LNGKLEIAGRTIKVS 144
LNG ++ GR I+VS
Sbjct: 318 LNGA-DLDGRQIRVS 331
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 6 RRSKG-VGYIEFYDAMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXX 63
R+ K G++ ++D S +AI +L+G+ L GQP+ V + A
Sbjct: 92 RKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHF------- 144
Query: 64 XXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH 123
++VG+L +T++ L + F F ++ D ++G +GFGFV F + +
Sbjct: 145 -------NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQD 197
Query: 124 AKAA-QSLNGKLEIAGRTIKVSSVT 147
A+ A +NGK ++ R I+ + T
Sbjct: 198 AQTAINEMNGKW-LSSRQIRCNWAT 221
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXX 59
+DR + RSKG G++ F D A+ ++GQ +P+ + P+ A KN
Sbjct: 188 LDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA-ANKNALPMQPAMYQN 246
Query: 60 XXXXXXXXXD---RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFV 116
D ++VG L N+T+ +L+ IF FG + V++P K GFV
Sbjct: 247 TQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP------PGKRCGFV 300
Query: 117 QFAHLEHAKAAQSLNGKLEIAGRTIKVS 144
Q+A+ A+ A S+ ++ G++I++S
Sbjct: 301 QYANKASAEHALSVLNGTQLGGQSIRLS 328
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQ-S 129
KL++G L +++ E L++ F FG V V++ D SG +GFGFV FA A +A+ +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 130 LNGKLEIAGRTIKVSSVTDHV 150
++GK + GR +++S + V
Sbjct: 102 MDGK-GLLGRPLRISFALERV 121
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
KL++G L F TE L E F G V Q+ +D S KGFGFV FA + A KA
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 130 LNGKLEIAGRTIKV 143
NG+ ++ GRTI V
Sbjct: 95 FNGQ-QLNGRTIFV 107
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
+L+V L T+ LR++F PFG ++ +L D E+ KGFGF+ F + A KA +S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 130 LNGKLEIAGRTIKV 143
L+GK+ + GR I V
Sbjct: 68 LDGKI-VDGRLIFV 80
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKA-AQ 128
R++Y+GN+ +T QL ++ E G VE VQ+ D SG + FGF +E A A +
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 129 SLNGKLEIAGRTIKVS 144
LNG + GR IKV+
Sbjct: 136 KLNGNT-VEGREIKVN 150
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 70 RKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKA-AQ 128
R++Y+GN+ +T QL ++ E G VE VQ+ D SG + FGF +E A A +
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 129 SLNGKLEIAGRTIKVS 144
LNG + GR IKV+
Sbjct: 136 KLNGNT-VEGREIKVN 150
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH-LEHAKAAQSL 130
L V NL + + LR+ FE FGPV+ + LP D +G +GFGFVQF + A A +
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 131 NGKLEIAGRTIKV 143
+G L + GR + V
Sbjct: 98 DGYL-LLGRELTV 109
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH-LEHAKAAQSL 130
L V NL + + LR+ FE FGPV+ + LP D +G +GFGFVQF + A A +
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 131 NGKLEIAGRTIKV 143
+G L + GR + V
Sbjct: 98 DGYL-LLGRELTV 109
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 7 RSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXXXX 65
RS+G G++ F + + A+ +L G L + + V + +
Sbjct: 240 RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKP 299
Query: 66 XXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAK 125
LYV NL +M E++LREIF +G + ++ + E+G KGFGFV F++ E +K
Sbjct: 300 NMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKV-MCHENGRSKGFGFVCFSNCEESK 358
Query: 126 AAQS-LNGKLEIAGRTIKV 143
A+ LNG L + G+ I V
Sbjct: 359 QAKRYLNGFL-VDGKPIVV 376
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 7 RSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLXXXXXXXXXXXX 61
+SKG G++ F ++ A+ AL+G+ + V K SE E L
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAA 321
Query: 62 XXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHL 121
LYV NL ++T+ +LRE F PFG + ++ D SG +G GFV F+
Sbjct: 322 DKSQGS---NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTP 377
Query: 122 EHA-KAAQSLNGKL 134
E A +A +NGK+
Sbjct: 378 EEATRAITEMNGKM 391
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 7 RSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLXXXXXXXXXXXX 61
+SKG G++ F ++ A+ AL+G+ + V K SE E L
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAA 321
Query: 62 XXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHL 121
LYV NL ++T+ +LRE F PFG + ++ D SG +G GFV F+
Sbjct: 322 DKSQGS---NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTP 377
Query: 122 EHA-KAAQSLNGKL 134
E A +A +NGK+
Sbjct: 378 EEATRAITEMNGKM 391
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH-LEHAKAAQSL 130
L V NL + + LR FE FGPV+ + LP D +G +GFGF+QF + A+A +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 131 NGKLEIAGRTIKV 143
+G L + GR + V
Sbjct: 99 DGYL-LLGRELTV 110
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 69 DRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFV 116
D KL+VGNL FN+ +QL ++FE G VE+V++ D +G +GFGFV
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
+LYVGNL + + + L +F G V ++ D +SG KGFGFV + + KA S
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 130 LNGKLEIAGRTIKVS 144
LNG ++ GR I+VS
Sbjct: 339 LNGA-DLDGRQIRVS 352
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 7 RSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLXXXXXXXXXXXX 61
+SKG G++ F +A A+ +L+G + V K SE E L
Sbjct: 253 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAA 312
Query: 62 XXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHL 121
LYV NL ++++ +L+EIF PFG V ++ D +G KG GFV FA
Sbjct: 313 DKFQSS---NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATP 368
Query: 122 EHAKAAQS-LNGKL 134
E A A S L+GK+
Sbjct: 369 EEATEAMSQLSGKM 382
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
Query: 5 SRRSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXXXXX 63
+RRS G GY+ F + AI L+ L G+P+ V S + ++
Sbjct: 73 TRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG-------- 124
Query: 64 XXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH 123
+++ NL ++ L + F FG + ++ +D SG KG+GFVQ+A+ E
Sbjct: 125 -------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEES 176
Query: 124 A-KAAQSLNGKL 134
A KA + LNG L
Sbjct: 177 AQKAIEKLNGML 188
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH-LEHAKAAQSL 130
LYVG+L FN+T+SQL + F G V V++ D+ + G+G+V F + + A+A Q L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 131 NGKLEIAGRTIKV 143
N + + G+ I+V
Sbjct: 98 N-YIPLYGKPIRV 109
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQSL 130
L + NL + + LR+ FE FGP++ + LP + +G +GFGFV++ + E A+A + +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 131 NGKLEIAGRTIKV 143
N K+ I GR I +
Sbjct: 109 NHKV-IGGREIAI 120
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 2 DRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXXX 60
DR + RSKG G++ F D A+ ++GQ +P+ P+ +K L
Sbjct: 208 DRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQ 267
Query: 61 XXXXXXX-XDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFA 119
+ ++VG + ++TE L+ +F FG + V++P K GFVQ+A
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG------KRCGFVQYA 321
Query: 120 HLEHAKAAQSLNGKLEIAGRTIKVS 144
+ A+ A S+ ++ G++I++S
Sbjct: 322 NRACAEQALSVLNGTQLGGQSIRLS 346
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQSL 130
LYV NL F++T S + +F FG V V + D + +G FV + E AKAA+S+
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 131 NGKLEIAGRTIKVSSVTDH 149
+ K+ + GR + VS D+
Sbjct: 119 DAKI-LNGRKLTVSIAADN 136
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KL+VGNL +++ L +FE G VE+ ++ + E+ +GFGFV + ++ A+ A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 131 NGKLEIAGRTIKVS 144
+ ++ GR + V+
Sbjct: 211 FNRYDLNGRLLTVN 224
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEH-AKAAQS 129
++YVGNL +++ +L ++F G V ++ D E+G +GFGFV + ++ +A +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 130 LNGKLEIAGRTIKVS 144
L+G+ + GR I+V+
Sbjct: 305 LDGQ-NLEGRAIRVN 318
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
KL+VGNL +++ L +FE G VE+ ++ + ++ +GFGFV + +E A+ A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 131 NGKLEIAGRTIKVS 144
E+ GR + V+
Sbjct: 174 FNSFEVNGRRLTVN 187
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
++YVGNL +++ +L +F G V ++ D E+G +GFGFVQ ++ A +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 130 LNGKLEIAGRTIKVS 144
L+G+ + GR IKV+
Sbjct: 268 LDGQ-NLEGRAIKVN 281
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
LYVG L + ES L F PFG ++ V+ PLD + + FGFV F E A AA
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 132 GKLEIAGRTIKVS 144
E+ GR + V+
Sbjct: 75 DGAELYGRVLTVN 87
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQS 129
KLYV L F TE LR+ FE FG + + + +D + KGF F+++ E A KA Q
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 130 LNGKLEIAGRTIKV 143
++GK + GR I V
Sbjct: 138 MHGKF-LDGRVIFV 150
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLN 131
L+V L++ +ES+++ FE +GP++ V L D + KG+ F+++ H KAA
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 132 GKLEIAGRTI 141
+I GR +
Sbjct: 200 DGQKIDGRRV 209
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSL 130
+L+V L ++ TE +L E F FG + V L LD ++ C+G FV + E AK A
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 131 NGKLEIAGRTIKV 143
KL GRT+ +
Sbjct: 288 LDKLPFQGRTLHI 300
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAH---LEHAKAA 127
+ ++G L + ++ LR+ FE +G + ++ LD SG +GFGF+ F ++ A AA
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 128 QSLNGKLEIAGRTIKVSSVTDHVG 151
+NG +++ GRTI V H G
Sbjct: 68 --MNG-MDLDGRTITVDKAQPHQG 88
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
+++VG L +++TE QL F+ +G + Q+ + ++G +GFGF+ F A A +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 130 LNGKLEIAGRTIKVSSVTDHVGSQ 153
++G+ E+ + I V+ VG +
Sbjct: 73 MHGR-ELGNKVISVNKAEPKVGGE 95
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 71 KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAA-QS 129
+++VG L +++TE QL F+ +G + Q+ + ++G +GFGF+ F A A +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 130 LNGKLEIAGRTIKVSSVTDHVGSQ 153
++G+ E+ + I V+ VG +
Sbjct: 73 MHGR-ELGNKVISVNKAEPKVGGE 95
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 9 KGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVK--------------PSEAEKNLXXXXX 54
K ++E A+AL G +L G PV V+ PS+ NL
Sbjct: 302 KKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAV 361
Query: 55 XXXXXXXXXXXXXXDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFG 114
+++VG L + TE Q+RE+ E FGP+ L D E+G+ KG+
Sbjct: 362 GLSSGSTGGLEGPD--RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYA 419
Query: 115 FVQFAHLEHAK-AAQSLNGKLEIAGRTIKV 143
F + A +LNG +++ +T+ V
Sbjct: 420 FCVYQDPSVTDIACAALNG-IKMGDKTLTV 448
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 72 LYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHA-KAAQSL 130
+YVG + F++TE L +F +G + V L D +G KGF F+ + A +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 131 NGKLEIAGRTIKVSSVTDHVGS 152
NG L + GRTIKV DH G+
Sbjct: 98 NGAL-VLGRTIKV----DHCGA 114
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 1 MDRNSRRSKGVGYIEFYDAMSVPMAIA-LSGQLLLGQPVMVKPSEAEKNLXXXXXXXXXX 59
+D N+ RSKG G++ F D A+ ++G + + + P+ K
Sbjct: 233 LDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMP 292
Query: 60 XXXXXXXXXDR---KLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFV 116
D ++VG L ++T+ L++ F FG + V++P+ KG GFV
Sbjct: 293 SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFV 346
Query: 117 QFAHLEHAKAA-QSLNGKLEIAGRTIKVS 144
QF + +A+ A + LNG + I +T+++S
Sbjct: 347 QFVNRPNAEEALEKLNGTV-IGKQTVRLS 374