Miyakogusa Predicted Gene

Lj4g3v2754390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2754390.1 Non Chatacterized Hit- tr|I1JY52|I1JY52_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32055
PE,63,3e-17,seg,NULL; PsaN,Photosystem I PsaN, reaction centre subunit
N,NODE_37384_length_615_cov_19.052032.path2.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64040.1 | Symbols: PSAN | photosystem I reaction center subu...   194   2e-50
AT5G64040.2 | Symbols: PSAN | photosystem I reaction center subu...   136   6e-33

>AT5G64040.1 | Symbols: PSAN | photosystem I reaction center subunit
           PSI-N, chloroplast, putative / PSI-N, putative (PSAN) |
           chr5:25628724-25629409 REVERSE LENGTH=171
          Length = 171

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/171 (59%), Positives = 113/171 (66%), Gaps = 12/171 (7%)

Query: 1   MAAMNSSVLACSYA----GCSDLNAKLTSMPSVALPPNVSSHKLPVIKAQ--------AS 48
           MAAMNSSVL CSYA    G  +LN K+  + S           +PVIKAQ         S
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 49  DGRRXXXXXXXXXXXXXXXXXXXXXXXXIEQYLEKSKANKELNDKKRLATSGANFARAYT 108
           +GRR                        I++YLE+SK NKELNDKKRLATSGANFARA+T
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFARAFT 120

Query: 109 VQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYNCGSNVFWKW 159
           VQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKY CGSNVFWKW
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171


>AT5G64040.2 | Symbols: PSAN | photosystem I reaction center subunit
           PSI-N, chloroplast, putative / PSI-N, putative (PSAN) |
           chr5:25628690-25629409 REVERSE LENGTH=181
          Length = 181

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 86/142 (60%), Gaps = 12/142 (8%)

Query: 1   MAAMNSSVLACSYA----GCSDLNAKLTSMPSVALPPNVSSHKLPVIKAQ--------AS 48
           MAAMNSSVL CSYA    G  +LN K+  + S           +PVIKAQ         S
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 49  DGRRXXXXXXXXXXXXXXXXXXXXXXXXIEQYLEKSKANKELNDKKRLATSGANFARAYT 108
           +GRR                        I++YLE+SK NKELNDKKRLATSGANFARA+T
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFARAFT 120

Query: 109 VQFGTCKFPENFTGCQDLAKQK 130
           VQFG+CKFPENFTGCQDLAKQK
Sbjct: 121 VQFGSCKFPENFTGCQDLAKQK 142