Miyakogusa Predicted Gene

Lj4g3v2754310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2754310.1 Non Chatacterized Hit- tr|I1J047|I1J047_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.1,2e-18,seg,NULL; ATG13,Autophagy-related protein
13,NODE_35703_length_2258_cov_32.995571.path2.1
         (543 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18770.1 | Symbols:  | Autophagy-related protein 13 | chr3:64...   278   1e-74
AT3G49590.1 | Symbols:  | Autophagy-related protein 13 | chr3:18...   149   4e-36
AT3G49590.2 | Symbols:  | Autophagy-related protein 13 | chr3:18...   149   4e-36
AT3G49590.3 | Symbols:  | Autophagy-related protein 13 | chr3:18...   149   4e-36

>AT3G18770.1 | Symbols:  | Autophagy-related protein 13 |
           chr3:6460026-6462510 REVERSE LENGTH=625
          Length = 625

 Score =  278 bits (710), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 170/315 (53%), Positives = 207/315 (65%), Gaps = 15/315 (4%)

Query: 12  DAAKTEQIITEFFAKSLHIILESRAVYASSRNSCADQAVLXXXXXXXXXXXXXVRPRDKW 71
           + AK EQII EFFAKSLHIILESR  + SSRN   +Q +              VRPRDKW
Sbjct: 14  EGAKAEQIIFEFFAKSLHIILESRTPFMSSRNFSGEQMICSPSSSSSSSSS--VRPRDKW 71

Query: 72  FNLALRECPSVLENVDLGRRNNLECVVIDVILVQRALDCDPVTSSFSPKRVLPRSSLLKE 131
           FNLALRECP+ LE+ D+GRR++LE +V+DV+LV R L  D      S KR L R+   K+
Sbjct: 72  FNLALRECPAALESFDIGRRSSLEPLVVDVVLVVRPLVGDQ-----SGKRELIRNFSGKD 126

Query: 132 RYPLCCNAGREEFGIEAKSEKIVERWVIQYESRKTRDXXXXXXXXXXXXX-XXXYKKVTL 190
            Y    N+ ++E G E K+E+I+ERWV+QY++RK R+                 YKK TL
Sbjct: 127 -YQSGWNSDQDELGCETKNEQIIERWVVQYDNRKIRESVTTSSRRSSSNKLQVMYKKATL 185

Query: 191 LVRSLYATVRLLPAYKIFGELNSSAQIRDFTLAHRISSIVEPLTRKEEAEMLKFGFTPVD 250
           L+RSL+  VRLLPAYKIF ELNSS QI  F L  R+ SIVEP TRKEEAEM KF FTPV+
Sbjct: 186 LLRSLFVMVRLLPAYKIFRELNSSGQIFKFKLVPRVPSIVEPFTRKEEAEMQKFSFTPVE 245

Query: 251 TSSGRLCLSVMYCPSASDVSSEPSTPLFPQVIPDYVGSPLADPLRKFPSLPVAG-----F 305
           T  GRLCLSV+Y  S SDVS E STP+ P  I DYVGSPLADPL++FPSLP++       
Sbjct: 246 TICGRLCLSVLY-RSLSDVSCEHSTPMSPTFITDYVGSPLADPLKRFPSLPLSYGSPPLL 304

Query: 306 PFPRQHCGNCDHCRA 320
           PF R+H  + D  +A
Sbjct: 305 PFQRRHSWSFDRYKA 319



 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 72/159 (45%), Gaps = 45/159 (28%)

Query: 383 DDDADPGSRAESLDH-GHMAEVLKAGGFFPIRKSHDAAVGALVHMLKKAPPLHQDFSTSE 441
           DD  D  SR  S DH G + E   + G +P +KS DAAVGALV MLKKAPPL QD S S 
Sbjct: 496 DDITDRNSRPGSFDHRGDIHEPFDSSGSYP-KKSQDAAVGALVRMLKKAPPLRQDVSES- 553

Query: 442 HSSLQEGLHQTATPNSRVSVTTTPVKLANQQPKKEHSSHGSRETLNSNTLEPNQILEEPR 501
                          SR  + +      N +P   H                     E  
Sbjct: 554 ---------------SRPEICSN-----NNKPAGAH---------------------EIA 572

Query: 502 PVSIKSTGITATRKTASDALEEFHGYKKMKN-LLLKQGS 539
             SI ++GI    KT +DALEE   YK+MKN LLL Q +
Sbjct: 573 VASITASGIALASKTTADALEELRSYKEMKNHLLLGQST 611


>AT3G49590.1 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=603
          Length = 603

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 155/343 (45%), Gaps = 56/343 (16%)

Query: 11  SDAAKTEQIITEFFAKSLHIILESRAVYASSRNSCADQAVLXXXXXXXXXXXXXVRPRDK 70
           SD  + EQI++ FF K+LHI+L SR     SR    ++                VR  DK
Sbjct: 9   SDIGRLEQIVSHFFPKALHIVLNSRIPSLQSRGRTRER-----------LSGLNVRKSDK 57

Query: 71  WFNLALRECPSVLENVDLGRRNNLECVVIDVILVQRALDCDPVTSSFSPKRVLPRSSLLK 130
           WFNL + + P+ LE +    RN L+ ++ID+ILV       P+++           S+++
Sbjct: 58  WFNLVMGDRPAALEKLHSWHRNILDSMIIDIILVH------PISNDNLDDDDDHSDSVVR 111

Query: 131 ERYPLCCNAGREEFGIEAKSEKIVERWVIQYESRKTRDXXXXXXXXXXXXXXXXYKKVTL 190
                              +E ++ERWV+QYE+                     YKK  +
Sbjct: 112 S------------------AETVIERWVVQYENPLI---MSPQSSDSATRYQKVYKKSII 150

Query: 191 LVRSLYATVRLLPAYKIFGELNSSAQIRDFTLAHRISSIVEPLTRKEEAEMLKFGFTPVD 250
           L+RSLYA  RLLPAY++  +L+SS     + L +++SS  +  +      M +F F PV+
Sbjct: 151 LLRSLYAQTRLLPAYRVSRQLSSSLASSGYDLIYKVSSFSDIFSGPVTETMKEFRFAPVE 210

Query: 251 TSSGRLCLSVMYCPSASDVSSEPSTPLFPQVIPDYVGSPLADPLRKFPS----------- 299
              GRLC SV Y    SD +      L P++I DYVGSP  DP+R FPS           
Sbjct: 211 VPPGRLCASVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHSFT 270

Query: 300 -----LPVAGFPFPRQHCGNCDHCRASPPSITNSAEKSFSPGK 337
                 P+ G    R H       R  PP+   +  +SFSP +
Sbjct: 271 GRAGRPPLTGSSAERPHSWTSGFHR--PPAQFATPNQSFSPAQ 311



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 82/208 (39%), Gaps = 54/208 (25%)

Query: 337 KVESRKYSGVKISANXXXXXXXXXXXXXXYPEDFDGSDFTWPFDLEDDDADPGSRAESLD 396
           K +S ++SGV  S++                +D D  D + PFD +D D      + SLD
Sbjct: 443 KYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQDDLDDPDCSCPFDFDDVDESGLQYSHSLD 502

Query: 397 HGHMAEVLKAGGFFPIRKSHDAAVGALVHMLKKAPPLHQDFSTSEHSSLQEGLHQTATPN 456
               +  +        R S DAAVG LVHMLK APPL QD ST  + +   G+ +  +  
Sbjct: 503 RRKTSSSISQSLPLGRRSSQDAAVGVLVHMLKTAPPLRQDSST--YMASMSGVQREGS-- 558

Query: 457 SRVSVTTTPVKLANQQPKKEHSSHGSRETLNSNTLEPNQILEEPRPVSIKSTGITATRKT 516
             VS T +   +A                                             ++
Sbjct: 559 --VSGTESEFSMA---------------------------------------------RS 571

Query: 517 ASDALEEFHGYKKMKNLLL---KQGSMP 541
            SDALEE   YK++K+LLL   K GS P
Sbjct: 572 TSDALEELRNYKQLKDLLLSKSKSGSGP 599


>AT3G49590.2 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=603
          Length = 603

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 155/343 (45%), Gaps = 56/343 (16%)

Query: 11  SDAAKTEQIITEFFAKSLHIILESRAVYASSRNSCADQAVLXXXXXXXXXXXXXVRPRDK 70
           SD  + EQI++ FF K+LHI+L SR     SR    ++                VR  DK
Sbjct: 9   SDIGRLEQIVSHFFPKALHIVLNSRIPSLQSRGRTRER-----------LSGLNVRKSDK 57

Query: 71  WFNLALRECPSVLENVDLGRRNNLECVVIDVILVQRALDCDPVTSSFSPKRVLPRSSLLK 130
           WFNL + + P+ LE +    RN L+ ++ID+ILV       P+++           S+++
Sbjct: 58  WFNLVMGDRPAALEKLHSWHRNILDSMIIDIILVH------PISNDNLDDDDDHSDSVVR 111

Query: 131 ERYPLCCNAGREEFGIEAKSEKIVERWVIQYESRKTRDXXXXXXXXXXXXXXXXYKKVTL 190
                              +E ++ERWV+QYE+                     YKK  +
Sbjct: 112 S------------------AETVIERWVVQYENPLI---MSPQSSDSATRYQKVYKKSII 150

Query: 191 LVRSLYATVRLLPAYKIFGELNSSAQIRDFTLAHRISSIVEPLTRKEEAEMLKFGFTPVD 250
           L+RSLYA  RLLPAY++  +L+SS     + L +++SS  +  +      M +F F PV+
Sbjct: 151 LLRSLYAQTRLLPAYRVSRQLSSSLASSGYDLIYKVSSFSDIFSGPVTETMKEFRFAPVE 210

Query: 251 TSSGRLCLSVMYCPSASDVSSEPSTPLFPQVIPDYVGSPLADPLRKFPS----------- 299
              GRLC SV Y    SD +      L P++I DYVGSP  DP+R FPS           
Sbjct: 211 VPPGRLCASVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHSFT 270

Query: 300 -----LPVAGFPFPRQHCGNCDHCRASPPSITNSAEKSFSPGK 337
                 P+ G    R H       R  PP+   +  +SFSP +
Sbjct: 271 GRAGRPPLTGSSAERPHSWTSGFHR--PPAQFATPNQSFSPAQ 311



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 82/208 (39%), Gaps = 54/208 (25%)

Query: 337 KVESRKYSGVKISANXXXXXXXXXXXXXXYPEDFDGSDFTWPFDLEDDDADPGSRAESLD 396
           K +S ++SGV  S++                +D D  D + PFD +D D      + SLD
Sbjct: 443 KYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQDDLDDPDCSCPFDFDDVDESGLQYSHSLD 502

Query: 397 HGHMAEVLKAGGFFPIRKSHDAAVGALVHMLKKAPPLHQDFSTSEHSSLQEGLHQTATPN 456
               +  +        R S DAAVG LVHMLK APPL QD ST  + +   G+ +  +  
Sbjct: 503 RRKTSSSISQSLPLGRRSSQDAAVGVLVHMLKTAPPLRQDSST--YMASMSGVQREGS-- 558

Query: 457 SRVSVTTTPVKLANQQPKKEHSSHGSRETLNSNTLEPNQILEEPRPVSIKSTGITATRKT 516
             VS T +   +A                                             ++
Sbjct: 559 --VSGTESEFSMA---------------------------------------------RS 571

Query: 517 ASDALEEFHGYKKMKNLLL---KQGSMP 541
            SDALEE   YK++K+LLL   K GS P
Sbjct: 572 TSDALEELRNYKQLKDLLLSKSKSGSGP 599


>AT3G49590.3 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=618
          Length = 618

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 155/343 (45%), Gaps = 56/343 (16%)

Query: 11  SDAAKTEQIITEFFAKSLHIILESRAVYASSRNSCADQAVLXXXXXXXXXXXXXVRPRDK 70
           SD  + EQI++ FF K+LHI+L SR     SR    ++                VR  DK
Sbjct: 9   SDIGRLEQIVSHFFPKALHIVLNSRIPSLQSRGRTRER-----------LSGLNVRKSDK 57

Query: 71  WFNLALRECPSVLENVDLGRRNNLECVVIDVILVQRALDCDPVTSSFSPKRVLPRSSLLK 130
           WFNL + + P+ LE +    RN L+ ++ID+ILV       P+++           S+++
Sbjct: 58  WFNLVMGDRPAALEKLHSWHRNILDSMIIDIILVH------PISNDNLDDDDDHSDSVVR 111

Query: 131 ERYPLCCNAGREEFGIEAKSEKIVERWVIQYESRKTRDXXXXXXXXXXXXXXXXYKKVTL 190
                              +E ++ERWV+QYE+                     YKK  +
Sbjct: 112 S------------------AETVIERWVVQYENPLI---MSPQSSDSATRYQKVYKKSII 150

Query: 191 LVRSLYATVRLLPAYKIFGELNSSAQIRDFTLAHRISSIVEPLTRKEEAEMLKFGFTPVD 250
           L+RSLYA  RLLPAY++  +L+SS     + L +++SS  +  +      M +F F PV+
Sbjct: 151 LLRSLYAQTRLLPAYRVSRQLSSSLASSGYDLIYKVSSFSDIFSGPVTETMKEFRFAPVE 210

Query: 251 TSSGRLCLSVMYCPSASDVSSEPSTPLFPQVIPDYVGSPLADPLRKFPS----------- 299
              GRLC SV Y    SD +      L P++I DYVGSP  DP+R FPS           
Sbjct: 211 VPPGRLCASVTYRSDLSDFNLGAHITLPPRIITDYVGSPATDPMRFFPSPGRSVEGHSFT 270

Query: 300 -----LPVAGFPFPRQHCGNCDHCRASPPSITNSAEKSFSPGK 337
                 P+ G    R H       R  PP+   +  +SFSP +
Sbjct: 271 GRAGRPPLTGSSAERPHSWTSGFHR--PPAQFATPNQSFSPAQ 311



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 82/208 (39%), Gaps = 54/208 (25%)

Query: 337 KVESRKYSGVKISANXXXXXXXXXXXXXXYPEDFDGSDFTWPFDLEDDDADPGSRAESLD 396
           K +S ++SGV  S++                +D D  D + PFD +D D      + SLD
Sbjct: 458 KYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQDDLDDPDCSCPFDFDDVDESGLQYSHSLD 517

Query: 397 HGHMAEVLKAGGFFPIRKSHDAAVGALVHMLKKAPPLHQDFSTSEHSSLQEGLHQTATPN 456
               +  +        R S DAAVG LVHMLK APPL QD ST  + +   G+ +  +  
Sbjct: 518 RRKTSSSISQSLPLGRRSSQDAAVGVLVHMLKTAPPLRQDSST--YMASMSGVQREGS-- 573

Query: 457 SRVSVTTTPVKLANQQPKKEHSSHGSRETLNSNTLEPNQILEEPRPVSIKSTGITATRKT 516
             VS T +   +A                                             ++
Sbjct: 574 --VSGTESEFSMA---------------------------------------------RS 586

Query: 517 ASDALEEFHGYKKMKNLLL---KQGSMP 541
            SDALEE   YK++K+LLL   K GS P
Sbjct: 587 TSDALEELRNYKQLKDLLLSKSKSGSGP 614