Miyakogusa Predicted Gene

Lj4g3v2731570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2731570.1 Non Chatacterized Hit- tr|I1N9I5|I1N9I5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18985
PE,85.53,0,POTASSIUM CHANNEL REGULATORY FACTOR,NULL; PRE-MRNA SPLICING
FACTOR-RELATED,NULL; Functional domain o,CUFF.51582.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03140.1 | Symbols:  | splicing factor Prp18 family protein |...   245   9e-66
AT1G54590.1 | Symbols:  | INVOLVED IN: RNA splicing; LOCATED IN:...   223   5e-59

>AT1G03140.1 | Symbols:  | splicing factor Prp18 family protein |
           chr1:754471-756223 REVERSE LENGTH=420
          Length = 420

 Score =  245 bits (625), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 1   MPEAKRRTADGKSLVARFKQCARYLNPLFKFCRNKILPDDIRQALLLMVECFMKRDYQAA 60
           M   +RRTA GK +VA FKQCARYL PLF  CR K LP DIRQAL++MV   +KRDY AA
Sbjct: 247 MENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIKRDYLAA 306

Query: 61  MSHYMKLAVGNAPWPIGVTMVGIHERSAREKIHTNSVAHIMNDETTRKYLQSVKRLMSIC 120
           M HY+KLA+GNAPWPIGVTMVGIHERSAREKI+TNSVAHIMNDETTRKYLQSVKRLM+ C
Sbjct: 307 MDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFC 366

Query: 121 QLLYPTLPSKAFEFNSLANGGSDLKSLLAEDK 152
           Q  YPT+PSKA EFNSLAN GSDL+SLLAE++
Sbjct: 367 QRRYPTMPSKAVEFNSLAN-GSDLQSLLAEER 397


>AT1G54590.1 | Symbols:  | INVOLVED IN: RNA splicing; LOCATED IN:
           spliceosomal complex; CONTAINS InterPro DOMAIN/s: Prp18
           (InterPro:IPR004098); BEST Arabidopsis thaliana protein
           match is: splicing factor Prp18 family protein
           (TAIR:AT1G03140.1); Has 388 Blast hits to 388 proteins
           in 196 species: Archae - 0; Bacteria - 0; Metazoa - 136;
           Fungi - 132; Plants - 48; Viruses - 0; Other Eukaryotes
           - 72 (source: NCBI BLink). | chr1:20391560-20393457
           REVERSE LENGTH=361
          Length = 361

 Score =  223 bits (567), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 125/153 (81%), Gaps = 2/153 (1%)

Query: 1   MPEAKRRTADGKSLVARFKQCARYLNPLFKFCRNKILPDDIRQALLLMVECFMKRDYQAA 60
           M   +RRTA GK ++A F QCARYL PLF  CRNK LP DIRQ L++MV C++KRDY  A
Sbjct: 187 MENTERRTAIGKQMLATFNQCARYLTPLFHLCRNKCLPADIRQGLMVMVNCWIKRDYLDA 246

Query: 61  MSHYMKLAVGNAPWPIGVTMVGIHERSAREKIHT-NSVAHIMNDETTRKYLQSVKRLMSI 119
            + ++KLA+GNAPWPIGVTMVGIHERSAREKI T +SVAHIMN+ETTRKYLQSVKRLM+ 
Sbjct: 247 TAQFIKLAIGNAPWPIGVTMVGIHERSAREKISTSSSVAHIMNNETTRKYLQSVKRLMTF 306

Query: 120 CQLLYPTLPSKAFEFNSLANGGSDLKSLLAEDK 152
           CQ  Y  LPSK+ EFNSLAN GS+L SLLAE++
Sbjct: 307 CQRRYSALPSKSIEFNSLAN-GSNLHSLLAEER 338