Miyakogusa Predicted Gene

Lj4g3v2730340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2730340.1 Non Chatacterized Hit- tr|D8SEY2|D8SEY2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.67,0.00000000000004,seg,NULL; eIF-4B,Plant specific
eukaryotic initiation factor 4B; SUBFAMILY NOT NAMED,NULL; FAMILY
NO,NODE_16003_length_761_cov_234.578186.path2.1
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B2...   229   1e-60
AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiatio...   224   6e-59
AT4G38710.2 | Symbols:  | glycine-rich protein | chr4:18078141-1...    56   3e-08
AT4G38710.1 | Symbols:  | glycine-rich protein | chr4:18078141-1...    56   3e-08

>AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B2 |
           chr1:4440927-4443520 REVERSE LENGTH=549
          Length = 549

 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/271 (50%), Positives = 163/271 (60%), Gaps = 11/271 (4%)

Query: 6   ERPRLVLDPRKGDGSVNETPPAM-TNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKA 64
           ER RLV +PRK D  V+ETP A+ T+KPSPFGAARPRE+VLA+KGLDWKKLDS+IEAKK 
Sbjct: 265 ERRRLVFEPRKADTEVSETPTAVKTSKPSPFGAARPREQVLAEKGLDWKKLDSDIEAKKG 324

Query: 65  XXX---------XXXXXXXXXXXXXXEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWR 115
                                        + V+KPRPKVNPFG+AKPREVLL E+G DWR
Sbjct: 325 QTSRPSSAQSSRPSSAQSNRSESSALNNVENVVKPRPKVNPFGDAKPREVLLEEQGKDWR 384

Query: 116 KIDLELERRGVDRPXXXXXXXXXXXXXXXXXXXXXXPKMN-SNQESADEAGANQTGAHAX 174
           KID ELE R VDRP                        +   ++ES  E+ +N       
Sbjct: 385 KIDSELEHRRVDRPETEGERMLKEEIEELRKKLEKEAAIAPESKESQQESDSNHQNLPDL 444

Query: 175 XXXXXXXXXXXIHDLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSD 234
                      I +LDDKVRF  +AV+RPGSSA R    S+RP SR+GS ++SRSV+  +
Sbjct: 445 IREKEKNLDLLIRELDDKVRFRPRAVERPGSSASRGGSYSERPHSRAGSIDESRSVESME 504

Query: 235 RPRSRGTGDAWMRPSDDRRQFQGSRERGFFS 265
           RPRS GTGD W RP DDRR FQGS+ERGFF+
Sbjct: 505 RPRSHGTGDNWPRPVDDRRNFQGSKERGFFN 535


>AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiation
           factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532
          Length = 532

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/273 (48%), Positives = 165/273 (60%), Gaps = 13/273 (4%)

Query: 6   ERPRLVLDPRKGDGSVNETPPAM--TNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKK 63
           ER RLVL+PRK +   +ETPP +  T+KP+PFGAARPRE+VLA+KGLDWKK+DSEIEAKK
Sbjct: 251 ERRRLVLEPRKVESGGSETPPVVEKTSKPNPFGAARPREDVLAEKGLDWKKIDSEIEAKK 310

Query: 64  AXXXXXXXXXXXXXX--------XXXEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWR 115
                                      G + V+KPRPKVNPFG+AKPREVLL E+G DWR
Sbjct: 311 GSSQTSRPTSAHSSRPSSAQSNRSESSGLNNVVKPRPKVNPFGDAKPREVLLEEQGKDWR 370

Query: 116 KIDLELERRGVDRPXXXXXXXXXXXXXXXXXXXXXXPKMNSNQESADEAGANQTGAHAXX 175
           K+DLELE R VDRP                            +ES  E G+N        
Sbjct: 371 KMDLELEHRRVDRPETEEEKMLKEEIEELRKKLEKESVAPEIKESDQEPGSNNNHNDLPE 430

Query: 176 XXXXXXXXXXI--HDLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFS 233
                     I   +LDDKVRF QK V+RPGS AGRT   S+R  SR+GS +++RS + +
Sbjct: 431 IIRGKEKDLEILTRELDDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFEST 490

Query: 234 DRPRSRGTGDAWMRPSDD-RRQFQGSRERGFFS 265
           +RPRSRG  DAW+RP+++ RR FQG++ERGFFS
Sbjct: 491 ERPRSRGAVDAWVRPANEQRRNFQGTKERGFFS 523


>AT4G38710.2 | Symbols:  | glycine-rich protein |
           chr4:18078141-18080002 REVERSE LENGTH=465
          Length = 465

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 9/66 (13%)

Query: 7   RPRLVLDPRKGDGSVNETPP------AMTNKP---SPFGAARPREEVLAQKGLDWKKLDS 57
           RPRLVL PR    +V E          +  KP   +PFG ARPREEVLA+KG DWK++D 
Sbjct: 278 RPRLVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDE 337

Query: 58  EIEAKK 63
           ++EA+K
Sbjct: 338 KLEAEK 343



 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 82  EGPDAVLKPRPK-VNPFGEAKPREVLLAERGADWRKIDLELE 122
           E P  V+  +PK  NPFG A+PRE +LAE+G DW++ID +LE
Sbjct: 299 ESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340


>AT4G38710.1 | Symbols:  | glycine-rich protein |
           chr4:18078141-18080002 REVERSE LENGTH=452
          Length = 452

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 9/66 (13%)

Query: 7   RPRLVLDPRKGDGSVNETPP------AMTNKP---SPFGAARPREEVLAQKGLDWKKLDS 57
           RPRLVL PR    +V E          +  KP   +PFG ARPREEVLA+KG DWK++D 
Sbjct: 278 RPRLVLQPRTLPVAVVEVVKPESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDE 337

Query: 58  EIEAKK 63
           ++EA+K
Sbjct: 338 KLEAEK 343



 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 82  EGPDAVLKPRPK-VNPFGEAKPREVLLAERGADWRKIDLELE 122
           E P  V+  +PK  NPFG A+PRE +LAE+G DW++ID +LE
Sbjct: 299 ESPVLVIVEKPKGANPFGNARPREEVLAEKGQDWKEIDEKLE 340