Miyakogusa Predicted Gene

Lj4g3v2728270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2728270.1 Non Chatacterized Hit- tr|D5ABK4|D5ABK4_PICSI
Putative uncharacterized protein OS=Picea sitchensis P,58.9,2e-19,
,CUFF.51564.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71190.2 | Symbols: SAG18 | senescence associated gene 18 | c...   111   8e-26
AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 | c...   111   9e-26
AT5G11870.2 | Symbols:  | Alkaline phytoceramidase (aPHC) | chr5...    72   6e-14
AT5G11870.1 | Symbols:  | Alkaline phytoceramidase (aPHC) | chr5...    72   1e-13

>AT1G71190.2 | Symbols: SAG18 | senescence associated gene 18 |
           chr1:26833597-26834982 REVERSE LENGTH=240
          Length = 240

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 65/76 (85%)

Query: 1   MAFLLPPMYTHSTYWLWASGFYPLAMLQESTDRLIYACTFHMVSGHTLKHLSAAMVPAIL 60
           MA LLPPMYTHSTYWLWA+GFY LA ++E+ D+ IY+ T H++SGH+LKHL AAMVP  L
Sbjct: 139 MAILLPPMYTHSTYWLWAAGFYLLAKVEEAADKPIYSWTHHIISGHSLKHLCAAMVPVFL 198

Query: 61  TVMLAKRSVHSEKLSL 76
           T+MLAKR+V +E++SL
Sbjct: 199 TLMLAKRTVQTERISL 214


>AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 |
           chr1:26833597-26834982 REVERSE LENGTH=281
          Length = 281

 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 65/76 (85%)

Query: 1   MAFLLPPMYTHSTYWLWASGFYPLAMLQESTDRLIYACTFHMVSGHTLKHLSAAMVPAIL 60
           MA LLPPMYTHSTYWLWA+GFY LA ++E+ D+ IY+ T H++SGH+LKHL AAMVP  L
Sbjct: 180 MAILLPPMYTHSTYWLWAAGFYLLAKVEEAADKPIYSWTHHIISGHSLKHLCAAMVPVFL 239

Query: 61  TVMLAKRSVHSEKLSL 76
           T+MLAKR+V +E++SL
Sbjct: 240 TLMLAKRTVQTERISL 255


>AT5G11870.2 | Symbols:  | Alkaline phytoceramidase (aPHC) |
           chr5:3825720-3827363 FORWARD LENGTH=270
          Length = 270

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 49/74 (66%)

Query: 1   MAFLLPPMYTHSTYWLWASGFYPLAMLQESTDRLIYACTFHMVSGHTLKHLSAAMVPAIL 60
           MA LLPP YTHS +WLWA+  Y +A ++   D  IY    +++SGH+L+HL +A+   +L
Sbjct: 190 MAVLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHLCSAVATLLL 249

Query: 61  TVMLAKRSVHSEKL 74
           T+ML  RS+   +L
Sbjct: 250 TIMLLYRSIRFNRL 263


>AT5G11870.1 | Symbols:  | Alkaline phytoceramidase (aPHC) |
           chr5:3825720-3827241 FORWARD LENGTH=262
          Length = 262

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 1   MAFLLPPMYTHSTYWLWASGFYPLAMLQESTDRLIYACTFHMVSGHTLKHLSAAMVPAIL 60
           MA LLPP YTHS +WLWA+  Y +A ++   D  IY    +++SGH+L+HL +A+   +L
Sbjct: 190 MAVLLPPKYTHSRFWLWATAAYTIAKIEGLADNKIYNANRYIISGHSLEHLCSAVATLLL 249

Query: 61  TVMLAKRSVHSEK 73
           T+ML  RS+   +
Sbjct: 250 TIMLLYRSIRFNR 262