Miyakogusa Predicted Gene
- Lj4g3v2717140.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2717140.1 Non Chatacterized Hit- tr|C6SVN2|C6SVN2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15937
PE,53.33,3e-19,RRM,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; RNA-binding do,CUFF.51559.1
(141 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 167 2e-42
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 102 7e-23
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 96 7e-21
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 81 3e-16
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 75 1e-14
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 74 2e-14
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 4e-14
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 2e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 71 3e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 71 3e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 71 3e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 70 4e-13
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 70 6e-13
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 69 1e-12
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 69 1e-12
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 68 2e-12
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 68 2e-12
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 68 2e-12
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 68 2e-12
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 68 2e-12
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 66 7e-12
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 64 3e-11
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 64 3e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 64 3e-11
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 64 4e-11
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 62 1e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 62 1e-10
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 61 3e-10
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 60 4e-10
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 5e-10
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 60 5e-10
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 60 5e-10
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 60 6e-10
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 60 6e-10
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 60 6e-10
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 7e-10
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-10
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-10
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 59 1e-09
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 59 1e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 59 1e-09
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 59 1e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 58 2e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-09
AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 57 4e-09
AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 57 4e-09
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 56 7e-09
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-09
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-09
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 56 7e-09
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 56 8e-09
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 9e-09
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 9e-09
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 55 1e-08
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 55 1e-08
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 55 1e-08
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 55 2e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 55 2e-08
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 54 4e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 54 4e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 4e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 5e-08
AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 5e-08
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 7e-08
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 7e-08
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 7e-08
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 53 7e-08
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) fa... 53 7e-08
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 7e-08
AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 8e-08
AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 8e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 52 1e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 52 1e-07
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 1e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 52 1e-07
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 2e-07
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 52 2e-07
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 2e-07
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 2e-07
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 2e-07
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 2e-07
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 2e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 51 2e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 51 3e-07
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-07
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-07
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 50 4e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 50 5e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 50 6e-07
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-07
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 49 8e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 49 9e-07
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 49 1e-06
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 49 1e-06
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 2e-06
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 47 3e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 3e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 47 4e-06
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 47 4e-06
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 7e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 8e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 8e-06
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 9e-06
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/139 (62%), Positives = 105/139 (75%), Gaps = 4/139 (2%)
Query: 2 AMRAAVAAPRGLRRLFCTNSTSPS--SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEK 59
A+ +AP GLRRLFC+N++ S SP + P R EPSTNLFVSGL+KRTT+E
Sbjct: 13 AVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTPA-RPQAEPSTNLFVSGLSKRTTSEG 71
Query: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEY 119
LR FA+FGEV A+VVTDRVSGYSKGFGFV+YAT+E+++KGI GMDGKFLDGWVIFAEY
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 120 AK-SSPAPGQQPANNMTNP 137
A+ + QP NNM+ P
Sbjct: 132 ARPREQSQSYQPQNNMSRP 150
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LFVSGL++ TT EKL++ FA FG++V ARV+TDR SG SKGFGFV YATIE+A K
Sbjct: 33 SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92
Query: 103 QGMDGKFLDGWVIFAE 118
M+ KFLDGWVIF +
Sbjct: 93 AEMNAKFLDGWVIFVD 108
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P T L+VSGL+ RTT + LR+ F +FG ++H +V D+V+ KGF F++Y T EEA K
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 102 IQGMDGKFLDGWVIFAEYAKS-SPAPGQQPANNMTNPYAR 140
IQGM GKFLDG VIF E AK+ S +P + P ++
Sbjct: 135 IQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSK 174
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
++ LF+ GL+ TT + L E F+K G+VV A++V DRVS SKGFGFV +A+ +EA K +
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPG 127
+G+ L+G IF +YAK+ + G
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSLG 117
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
S+ LF+ G+ + LRE F K+GEVV RV+ DR +G S+GFGFV + + E AS
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 102 IQGMDGKFLDGWVIFAEYAK 121
IQ +DG+ L G V+ YA
Sbjct: 98 IQALDGRDLHGRVVKVNYAN 117
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +FV GL+ T E L+E F FG++V A VV DR SG S+GFGFV Y +IE A+ +Q
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 104 GMDGKFLDGWVIFAEYAKS 122
M K LDG +I A S
Sbjct: 96 AMQNKELDGRIIGVHPADS 114
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 53/79 (67%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF++GL+ T+ + LR F FGE+V +++ D++S SKG+ F++Y T E A ++ M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 106 DGKFLDGWVIFAEYAKSSP 124
+GK ++GW+I + AK+ P
Sbjct: 344 NGKIINGWMIVVDVAKTKP 362
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LFVS L+ TT + LR+ F+ FG++ AR++ D + KGFGF+ + + ++A K +
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 103 QGMDGKFLDGWVIFAEYAKSS 123
+ +DGK +DG +IF E AK++
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNA 86
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G ST LF+ GL+ T LR+ FA FG+VV A+V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPA 125
+ A+ I MDGK L+G I A P+
Sbjct: 82 NFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G ST LF+ GL+ T LR+ FA FG+VV A+V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPA 125
+ A+ I MDGK L+G I A P+
Sbjct: 82 NFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G ST LF+ GL+ T LR+ FA FG+VV A+V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPA 125
+ A+ I MDGK L+G I A P+
Sbjct: 82 NFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G ST LF+ GL+ T LR+ FA FG+VV A+V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPA 125
+ A+ I MDGK L+G I A P+
Sbjct: 82 NFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 15 RLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHAR 74
RLF S+ ++ ++ + R M S+ +FV G++ T LRE F+K+GEVV A+
Sbjct: 9 RLFSQTSSHVTASSSML--QSIRCM--SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAK 64
Query: 75 VVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYA 120
++ DR +G S+GF FV + + EEAS +Q +DG+ L G I YA
Sbjct: 65 IIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L FAK+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EA K ++ +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGP 96
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 26 SPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSK 85
S F +GPP + +L V + RTT + L FAK+G+VV + DR +G S+
Sbjct: 2 SHFGRSGPPDISD----TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSR 57
Query: 86 GFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
GF FV+Y +EA K ++ +DG+ +DG I ++AK P
Sbjct: 58 GFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGP 96
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P +++ E TNL++ L + L F+ FGE+V A+V+ DRV+G SKG+GFVKYA
Sbjct: 472 PPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
++ A+ +Q M+G +G + A S
Sbjct: 530 DVQMANTAVQAMNGYRFEGRTLAVRIAGKS 559
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P +++ E TNL++ L + L F+ FGE+V A+V+ DRV+G SKG+GFVKYA
Sbjct: 472 PPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
++ A+ +Q M+G +G + A S
Sbjct: 530 DVQMANTAVQAMNGYRFEGRTLAVRIAGKS 559
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P +++ E TNL++ L + L F+ FGE+V A+V+ DRV+G SKG+GFVKYA
Sbjct: 472 PPSKEYDE--TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Query: 94 TIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
++ A+ +Q M+G +G + A S
Sbjct: 530 DVQMANTAVQAMNGYRFEGRTLAVRIAGKS 559
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G S+ LFV GL+ T L++ F FGEV A V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYA-KSSPAP 126
++ + A+ I+ MDGK L+G I A + S AP
Sbjct: 82 SFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 34 PTTRQMGEP---STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
P T +G S+ LFV GL+ T L++ F FGEV A V+ DR +G S+GFGFV
Sbjct: 22 PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYA-KSSPAP 126
++ + A+ I+ MDGK L+G I A + S AP
Sbjct: 82 SFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 12 GLRR-LFCTNSTSPSSPFTLTGPP-TTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGE 69
G+RR L C N+ L P ++ +G+P LFV L+ TT + LRE +K+G
Sbjct: 37 GVRRALLCYNAG-------LYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGR 89
Query: 70 VVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQ 129
+ + R+V V+G S+G+GFV+Y T +E + + +DG I +Y + PG
Sbjct: 90 IKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWI 149
Query: 130 P 130
P
Sbjct: 150 P 150
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M E FV GL T E L+ F++FG+V+ ++++ DR SG S+GFGFV + +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 99 SKGIQGMDGKFLDGWVIFAEYAKSSPAPG 127
I+ M+GK LDG VI A+S + G
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSRGSGG 89
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 15 RLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHAR 74
RL N +P + P ++ EP+ ++V L +L + F++ G+VV AR
Sbjct: 219 RLLTVNKAAPRG----SRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274
Query: 75 VVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSP 124
VV DR +G S+GFGFV + ++E ++ I +DG+ L+G I A+ P
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
+T ++V L+ TT + LRE F+ +G VV A V+ DR + S+GFGFV Y++ EA +
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 103 QGMDGKFLDG 112
GMDGK L+G
Sbjct: 62 SGMDGKELNG 71
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M E FV GL T E L+ F++FG+V+ ++++ DR SG S+GFGFV + +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 99 SKGIQGMDGKFLDGWVI 115
I+ M+GK LDG VI
Sbjct: 61 RDAIEEMNGKELDGRVI 77
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M E FV GL T E L+ F++FG+V+ ++++ DR SG S+GFGFV + +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 99 SKGIQGMDGKFLDGWVI 115
I+ M+GK LDG VI
Sbjct: 61 RDAIEEMNGKELDGRVI 77
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
ST L++ GL+ T L++ F+ F V ARV+T++V+G S+G+GFV + + + A+ I
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 103 QGMDGKFLDGWVIFAEYAKSSPA 125
M+G+ L+G+ I AK P+
Sbjct: 90 SAMNGQELNGFNISVNVAKDWPS 112
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+NL+V L++ T +KLRE FA FG + +V+ D SG S+G GFV ++T EEA++ I
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 104 GMDGKFL 110
M+GK +
Sbjct: 386 EMNGKMI 392
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G N+F+ L+K + L E F+ FG ++ +V D SG SKG+GFV+Y
Sbjct: 125 PSLRKSG--VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
T E A I ++G L+ ++
Sbjct: 182 TDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
+T+L+V L+ T +L E F + G+VV RV D + S G+G+V YAT ++AS+ +
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 103 QGMDGKFLDGWVIFAEYAKSSPA 125
++ L+G I Y+ P+
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPS 126
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L++ + E+L + F +FG V + V+ G SKGFGFV + ++A++ +
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Query: 104 GMDGKFLDG--WVIFAEYAKS 122
++GK D W + KS
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKS 303
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+NL+V L++ T +KLRE FA FG + +V+ D SG S+G GFV ++T EEA++ I
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 104 GMDGKFL 110
M+GK +
Sbjct: 386 EMNGKMI 392
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G N+F+ L+K + L E F+ FG ++ +V D SG SKG+GFV+Y
Sbjct: 125 PSLRKSG--VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
T E A I ++G L+ ++
Sbjct: 182 TDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
+T+L+V L+ T +L E F + G+VV RV D + S G+G+V YAT ++AS+ +
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 103 QGMDGKFLDGWVIFAEYAKSSPA 125
++ L+G I Y+ P+
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPS 126
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L++ + E+L + F +FG V + V+ G SKGFGFV + ++A++ +
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Query: 104 GMDGKFLDG--WVIFAEYAKS 122
++GK D W + KS
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKS 303
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P +L+V+GL+ R T L + FAK G+V +V D + S+GFGF+ ++ +A++
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 102 IQGMDGKFLDGWVIFAEYA 120
I+ +D L G VI E A
Sbjct: 133 IRSLDHSVLQGRVITVEKA 151
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL+V L+ T EKLRE FA+FG + +V+ D SG SKG GFV ++ EAS+ +
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNE 387
Query: 105 MDGKFLDGWVIFAEYAK 121
M+GK + G ++ A+
Sbjct: 388 MNGKMVGGKPLYVALAQ 404
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NLFV L+K + L E F+ G +V +V TD + G S+G+GFV++ T + A I+
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEK 193
Query: 105 MDGKFLDGWVIF 116
++GK L+ IF
Sbjct: 194 LNGKVLNDKQIF 205
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L++ TT ++L+ F ++G + A V+ D G S+ FGFV + E+A++ ++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVE 283
Query: 104 GMDGKFLDG--WVIFAEYAKS 122
++GK D W + KS
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKS 304
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+L+V L+ T +L + F + +VV RV D + S G+G+V Y+ ++A K +Q
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 104 GMDGKFLDGWVIFAEY 119
++ +L+G +I Y
Sbjct: 106 KLNYSYLNGKMIRITY 121
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
+P F+ GL T+ LR+ F K+G +V A+VV D+ SG S+GFGF+ + + +
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 101 GIQGMDGKFLDGWVIFAEYAKSSPAPGQQPANN 133
I M+G LDG I + K+ P G +N
Sbjct: 64 AIAAMNGMDLDGRTITVD--KAQPHQGGAGRDN 94
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S+ LFV G++ +T E L + F+++G+V+ V+ D++ KGF +V +++ EEA K +
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 103 QGMDGKFLDGWVIFAEYAKSS 123
++ + +DG V+ + K++
Sbjct: 80 LELNAQLVDGRVVILDTTKAA 100
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+ R+ G + N+F+ L++ + L + F+ FG +V +V D SG SKG+GFV+YA
Sbjct: 116 PSVRRSG--AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYA 172
Query: 94 TIEEASKGIQGMDGKFLDGWVIF 116
E A K I+ ++G L+ ++
Sbjct: 173 NEESAQKAIEKLNGMLLNDKQVY 195
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S+NL+V L+ + EKL+E F+ FG V ++V+ D +G SKG GFV +AT EEA++ +
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAM 375
Query: 103 QGMDGKFLDGWVIFAEYAK 121
+ GK ++ ++ A+
Sbjct: 376 SQLSGKMIESKPLYVAIAQ 394
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L + TT + L+ F ++G++ A V+ D G SKGFGFV + ++A++ ++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVE 273
Query: 104 GMDGKFLDG--WVI 115
++G D W +
Sbjct: 274 SLNGHKFDDKEWYV 287
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V L+ L F + G+VV ARV+ DR SG SKGFGFV ++ +E K I +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQ 128
+G LDG I A++ P GQ
Sbjct: 340 NGADLDGRQIRVSEAEARPPRGQ 362
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V L+ L F + G+VV ARV+ DR SG SKGFGFV ++ +E K I +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQ 128
+G LDG I A++ P GQ
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V L+ L F + G+VV ARV+ DR SG SKGFGFV ++ +E K I +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQ 128
+G LDG I A++ P GQ
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L+V L+ L F + G+VV ARV+ DR SG SKGFGFV ++ +E K I +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQ 128
+G LDG I A++ P GQ
Sbjct: 319 NGADLDGRQIRVSEAEARPPRGQ 341
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+ T + SGL+ TT + LR+ FA F AR++ D+ + KGFGF+ + + ++A
Sbjct: 67 GKTLTCVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQ 121
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAP 126
K ++ ++GK ++G +IF E AK AP
Sbjct: 122 KALKALNGKIVNGRLIFVETAKEVEAP 148
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T + +R F +FGE+V A V+TD+ +G SKG+GFV + E A + Q
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 104 GMDGKFLDG 112
M+ +DG
Sbjct: 82 NMN-PVIDG 89
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++V L+ L F++ G+VV ARV+ DR SG SKGFGFV Y + +E I+ +
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 106 DGKFLDGWVIFAEYAKSSP 124
DG LDG I A++ P
Sbjct: 266 DGADLDGRQIRVSEAEARP 284
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 28 FTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGF 87
F PP + LFV L + +L + F G V V+ D+++G S+GF
Sbjct: 76 FADVAPPKEQSFS-ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 88 GFVKYATIEEASKGIQGMDGKFLDG 112
GFV +++ E Q +G LDG
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDG 159
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
P +L+V+GL+ R T L + FAK G+V +V D + S+GFGF+ ++ +A++
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 102 IQGMDGKFLDGWVIFAE 118
I+ +D L G VI E
Sbjct: 103 IRSLDHSVLQGRVITVE 119
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+ FV GL T L FA++G+V+ ++++ DR +G S+GFGFV + +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 100 KGIQGMDGKFLDG 112
I+GM+G+ LDG
Sbjct: 64 DAIEGMNGQDLDG 76
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+ FV GL T L FA++G+V+ ++++ DR +G S+GFGFV + +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 100 KGIQGMDGKFLDG 112
I+GM+G+ LDG
Sbjct: 64 DAIEGMNGQDLDG 76
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%)
Query: 13 LRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVH 72
+RR+ S SS F T PS+ LF+ GL+ + L++ F+ FGEV
Sbjct: 10 VRRVSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAE 69
Query: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDG 112
R+ D+ SG S+GFGFV +A +A MDGK L G
Sbjct: 70 VRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLG 109
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 16/101 (15%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL+V L+ KL E F++FG + +V+ +G SKG GFV+++T EEASK +
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHS-NGISKGVGFVEFSTSEEASKAMLK 282
Query: 105 MDGKFLDGWVIFAEYAKSS---------------PAPGQQP 130
M+GK + I+ A+ P+P QQP
Sbjct: 283 MNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQP 323
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family
protein | chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 2 AMRAAVAAPRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEK 59
A+ ++P GLRRLFC+N+ S F+ PP RQ EPSTNLF SGL+KR T+E+
Sbjct: 13 AVTEVASSPVGLRRLFCSNA----SRFSFLSPPARRQ-AEPSTNLFHSGLSKRITSER 65
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+ G++ T+ ++LR+ F FGEV+ A ++ DR +G ++GFGFV +A A + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 103 ---QGMDGKFLDGWVIFAEYAKS 122
+DGK L +++ + +S
Sbjct: 65 LLKHIIDGKILVDSIVYNQLCRS 87
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+L+E F K+G++V A ++ DR +G ++GFGF+ +A A + I M
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--M 74
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 75 DKHIIDGRTV--EAKKAVPRDDQQ 96
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+L+E F K+G++V A ++ DR +G ++GFGF+ +A A + I M
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI--M 71
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 72 DKHIIDGRTV--EAKKAVPRDDQQ 93
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G+P LFVS LN ++ K++ EF +G + +VTD+++ KG+ F++Y +
Sbjct: 134 GDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMK 193
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQP 130
+ DG+ +DG + + + P +P
Sbjct: 194 AAYKQADGQKIDGRRVLVDVERGRTVPNWRP 224
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
T +FV GL T T+++R F +FGE++ A ++TD+ +G SKG+GFV + + A++ +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1008
Length = 1008
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 23 SPSSPFTLTGPPTTRQMGE--PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRV 80
SPS+ L+ +++ E P+ L V GL++ E LR EF+K + R+V D+
Sbjct: 410 SPSADVGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKF 469
Query: 81 SGYSKGFGFVKYATIEEASKGIQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ S+GF FV + ++E+A+K ++ + L+ G ++ YAKS G
Sbjct: 470 THVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVHGSG 518
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+ ++T E L + A++G + H RV+ ++ SG S+GF F+ + T++ A
Sbjct: 270 PSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTM 329
Query: 102 IQGM--DGKFLDGWVIFAEYA 120
+ + DG LDG + Y+
Sbjct: 330 MDRIEHDGIVLDGRKLMFHYS 350
>AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1007
Length = 1007
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 23 SPSSPFTLTGPPTTRQMGE--PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRV 80
SPS+ L+ +++ E P+ L V GL++ E LR EF+K + R+V D+
Sbjct: 409 SPSADVGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKF 468
Query: 81 SGYSKGFGFVKYATIEEASKGIQGMDGKFLD--GWVIFAEYAKSSPAPG 127
+ S+GF FV + ++E+A+K ++ + L+ G ++ YAKS G
Sbjct: 469 THVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVHGSG 517
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKG 101
PS + V GL+ ++T E L + A++G + H RV+ ++ SG S+GF F+ + T++ A
Sbjct: 270 PSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTM 329
Query: 102 IQGM--DGKFLDGWVIFAEYAK 121
+ + DG LDG + Y++
Sbjct: 330 MDRIEHDGIVLDGRKLMFHYSQ 351
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+LR+ F+ +G+VV A ++ DR +G ++GFGF+ +A + + I M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQ 87
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+LR+ F+ +G+VV A ++ DR +G ++GFGF+ +A + + I M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQ 87
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+LR+ F+ +G+VV A ++ DR +G ++GFGF+ +A + + I M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQ 87
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ G++ T E+LR+ F+ +G+VV A ++ DR +G ++GFGF+ +A + + I M
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
D +DG + E K+ P QQ
Sbjct: 66 DKHIIDGRTV--EAKKAVPRDDQQ 87
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L V L++ L+E F FGEV+H + DR +G G+V++ +A K M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 106 DGKFLDGWVIFAEY 119
DG +DG V+ A +
Sbjct: 160 DGAQIDGKVVKATF 173
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ GL TTTE LR F+ +G++ A V+ D+V+G SKG+GFV + ++ A ++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK-E 135
Query: 106 DGKFLDGWVIFAEYAKS 122
K +DG V + A S
Sbjct: 136 PSKKIDGRVTVTQLAAS 152
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LF+ GL TTTE LR F+ +G++ A V+ D+V+G SKG+GFV + ++ A ++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK-E 135
Query: 106 DGKFLDGWVIFAEYAKS 122
K +DG V + A S
Sbjct: 136 PSKKIDGRVTVTQLAAS 152
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L V L++ L+E F FGEV+H + DR +G G+V++ +A K M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 106 DGKFLDGWVIFAEY 119
DG +DG V+ A +
Sbjct: 160 DGAQIDGKVVKATF 173
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
L V L++ L+E F FGEV+H + DR +G G+V++ +A K M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 106 DGKFLDGWVIFAEY 119
DG +DG V+ A +
Sbjct: 160 DGAQIDGKVVKATF 173
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
T +FV GL T T+++R F +FGE++ A ++TD+ +G SKG+GFV + + A++ +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T LR F +FG++V A V+TD+ SG SKG+GFV + E A K
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T LR F +FG++V A V+TD+ SG SKG+GFV + E A K
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+NL++ L+ EKL+E F+++G V +V+ + G S+GFGFV Y+ EEA ++
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMK 400
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+GK + ++ A+
Sbjct: 401 EMNGKMIGRKPLYVALAQ 418
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L K T ++L++ F K+G++ A V+ D+ SG S+ FGFV + + E A+ ++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+G L V++ A+
Sbjct: 298 KMNGISLGEDVLYVGRAQ 315
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+TR G+ N+F+ L+ + L E F+ FG ++ +V D V G SKG+GFV++
Sbjct: 138 PSTRLSGK--GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFE 194
Query: 94 TIEEASKGIQGMDGKFLDGWVIF 116
E A I ++G L+ +F
Sbjct: 195 KEETAQAAIDKLNGMLLNDKQVF 217
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+NL++ L+ EKL+E F+++G V +V+ + G S+GFGFV Y+ EEA ++
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMK 400
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+GK + ++ A+
Sbjct: 401 EMNGKMIGRKPLYVALAQ 418
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L K T ++L++ F K+G++ A V+ D+ SG S+ FGFV + + E A+ ++
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVE 297
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+G L V++ A+
Sbjct: 298 KMNGISLGEDVLYVGRAQ 315
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+TR G+ N+F+ L+ + L E F+ FG ++ +V D V G SKG+GFV++
Sbjct: 138 PSTRLSGK--GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFE 194
Query: 94 TIEEASKGIQGMDGKFLDGWVIF 116
E A I ++G L+ +F
Sbjct: 195 KEETAQAAIDKLNGMLLNDKQVF 217
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
T +FV GL T T+++R F +FGE++ A ++TD+ +G SKG+GFV + + A++ +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 7 VAAPRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAK 66
+ +PR L + S S+P + + G NLF+ + + ++L F
Sbjct: 312 IVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQS 371
Query: 67 FGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSS 123
FG V+ A+V D+ +G SK FGFV Y + A I M+G+ L G + + + S
Sbjct: 372 FGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDS 428
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
T +FV GL T E +++ F +FGE++ A V+TD+ SG SKG+GFV + E A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
T +FV GL T E +++ F +FGE++ A V+TD+ SG SKG+GFV + E A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 52/88 (59%)
Query: 47 FVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMD 106
FV G + + +L++ F++FG+V + +++ + + S G+G+V + + E+A ++ M+
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 107 GKFLDGWVIFAEYAKSSPAPGQQPANNM 134
GKF DG I ++ + + ++P ++
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRPHSDF 167
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
T +FV GL T E +++ F +FGE++ A V+TD+ SG SKG+GFV + E A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T +E LR+ F ++GE++ A V+ D+ +G SKG+GFV + E A +
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARR 80
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++V L + +L F++ G+VV ARVV+DR +G S+GFGFV+ + E + I +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 106 DGKFLDGWVIFAEYAK 121
DG+ L+G I A+
Sbjct: 269 DGQNLEGRAIKVNVAE 284
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T ++V GL T E LR F +FG+++H +V DR +G S+G+GFV + E A++ Q
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111
Query: 104 G----MDGK 108
+DG+
Sbjct: 112 NPKPVIDGR 120
>AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=238
Length = 238
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
++ P T L+V+GL+ R T + L FAK G+V +V + + S+GF FV +++++
Sbjct: 65 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 124
Query: 98 ASKGIQGMDGKFLDGWVIFAEYAK----SSPAPGQ 128
A + I+ ++ L+G I E ++ +P PG
Sbjct: 125 AERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGH 159
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL++ L+ EKL+E F+++G V ++V+ + G S+GFGFV Y+ EEA + +
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSE 391
Query: 105 MDGKFL 110
M+GK +
Sbjct: 392 MNGKMI 397
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
P+TR G+ N+F+ L+ + L E F+ FG ++ +V D V+G SKG+GFV++
Sbjct: 128 PSTRLSGK--GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFE 184
Query: 94 TIEEASKGIQGMDGKFLDGWVIFA 117
E A I ++G ++ +F
Sbjct: 185 KEESAQAAIDKLNGMLMNDKQVFV 208
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
TN++V L K ++LR+ F KFG + A V+ D+ SG S+ FGFV + E A+ ++
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVE 287
Query: 104 GMDGKFLDGWVIFAEYAK 121
M+G L V++ A+
Sbjct: 288 KMNGISLGDDVLYVGRAQ 305
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T +E LR F ++G+++ A V+TD+ +G SKG+GFV + E A +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARR 80
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
T +FV GL T +E LR F ++G+++ A V+TD+ +G SKG+GFV + E A +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARR 80
>AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=239
Length = 239
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
++ P T L+V+GL+ R T + L FAK G+V +V + + S+GF FV +++++
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 125
Query: 98 ASKGIQGMDGKFLDGWVIFAEYAK----SSPAPGQ 128
A + I+ ++ L+G I E ++ +P PG
Sbjct: 126 AERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGH 160
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+ G++ T+ ++LR+ F FGEV+ A ++ DR +G ++GFGFV +A A + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 103 ---QGMDGKFLD 111
+DGK ++
Sbjct: 65 LLKHIIDGKIVE 76
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
S LF+ G++ T+ ++LR+ F FGEV+ A ++ DR +G ++GFGFV +A A + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 103 ---QGMDGKFLD 111
+DGK ++
Sbjct: 65 LLKHIIDGKIVE 76
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 39 MGEPS---TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATI 95
M P+ T ++V+GL T TE L F +FGE+V+A+VV D + SKGFGFV + +
Sbjct: 1 MSHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60
Query: 96 EEASKGIQG----MDGKFLD 111
E A++ + +DG+ ++
Sbjct: 61 ESATRACENPNHTIDGRTVN 80
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 54.3 bits (129), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 31 TGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFV 90
T P +G LFV+ L+++T + F GEVVH R++ + +G G FV
Sbjct: 295 TPPEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNH-TGKHVGCAFV 353
Query: 91 KYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAP 126
++ + EA ++ +G++L+ IF E AK P P
Sbjct: 354 EFGSANEAKMALETKNGEYLNDCKIFLEVAKMVPYP 389
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV+ L+ +T + + F GEVV R++ + G G+GFV++A+ +E K ++
Sbjct: 187 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNH-EGKHVGYGFVEFASADETKKALENK 245
Query: 106 DGKFLDGWVIFAEYAKSSPAP 126
+G++L IF + AK++P P
Sbjct: 246 NGEYLHDHKIFIDVAKTAPYP 266
Score = 52.8 bits (125), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 33 PPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKY 92
P + LFV+ L+ RT + + F EVV R++ + G G GFV++
Sbjct: 425 PALVEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNH-RGEHVGCGFVEF 483
Query: 93 ATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAP 126
A++ EA K +Q M+G+ L IF + + +P P
Sbjct: 484 ASVNEAQKALQKMNGENLRSREIFLDVVELAPYP 517
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV+ L T + + F K GEVV +++ + + G G GFV++A++ EA + +Q
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN-LKGKLVGCGFVEFASVNEAEEALQKK 128
Query: 106 DGKFLDGWVIFAEYA 120
+G+ LD IF + A
Sbjct: 129 NGECLDNNKIFLDVA 143
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+NL+V L++ +LRE F +G++V A+V+ +G SKGFGFV ++ EE+ + +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362
Query: 104 GMDGKFLDGWVIFAEYAK 121
++G +DG I A+
Sbjct: 363 YLNGFLVDGKPIVVRVAE 380
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
NL+V L+ T+ L F FG ++ +VV + +G SKGFGFV++ T + A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSA 170
Query: 105 MDGKFLDGWVIF-AEYAKSSPAPGQQPANNMTNPYAR 140
+ G + G +F A++ + TN Y +
Sbjct: 171 LHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVK 207
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
LF+ G++ T E+L+E F+ FGEV+ A ++ DR +G ++GFGFV +A
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 41 EPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
E LFV L+ T+E L F + G+VV ARVV D +G S+G+GFV Y++ E
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 101 GIQGMDGKFLDGWVIFAEYAK 121
++ +DG L+G I A+
Sbjct: 234 ALESLDGFELEGRAIRVNLAQ 254
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
LF+ G++ T E+L+E F+ FGEV+ A ++ DR +G ++GFGFV +A
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
N+FV L+ T L + F+ F ARV+ D+ +G S+GFGFV + ++A I
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 105 MDGKFLDGWVIFAEYAKSSPAPG 127
M+GK+L I +A G
Sbjct: 205 MNGKWLSSRQIRCNWATKGATSG 227
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEA 98
M E FV GL T E L+ F++FG+V+ ++++ DR SG S+GFGFV + +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 99 SKGIQGMD 106
I+ M+
Sbjct: 61 RDAIEEMN 68
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 3 MRAAVAAPRGLR--RLFCTNSTSPSSPFTLTGPPTTRQMGEPS-TNLFVSGLNKRTTTEK 59
++ +A PRG+ RL T + SP T P++ Q P+ NLF+ + + ++
Sbjct: 296 LQYPMAFPRGMIPPRLPLT-TVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQE 354
Query: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDG 112
L F FG+V+ A+V D+ +G SK FGF+ Y + A I M+G L G
Sbjct: 355 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSG 407
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 3 MRAAVAAPRGLR--RLFCTNSTSPSSPFTLTGPPTTRQMGEPS-TNLFVSGLNKRTTTEK 59
++ +A PRG+ RL T + SP T P++ Q P+ NLF+ + + ++
Sbjct: 287 LQYPMAFPRGMIPPRLPLT-TVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQE 345
Query: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDG 112
L F FG+V+ A+V D+ +G SK FGF+ Y + A I M+G L G
Sbjct: 346 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSG 398
>AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=244
Length = 244
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
++ P T L+V+GL+ R T + L FAK G+V +V + + S+GF FV +++++
Sbjct: 80 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 139
Query: 98 ASKGIQGMDGKFLDGWVIFAE 118
A + I+ ++ L+G I E
Sbjct: 140 AERCIKYLNQSVLEGRYITVE 160
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS-KGFGFVKYATIEEASKG 101
S NL+V L TT L E F ++G++ DR++ YS +GF F+ Y +EEA
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAA 69
Query: 102 IQGMDGKFLDGWVIFAEYAK 121
+ + G L+G I EYA+
Sbjct: 70 KEALQGANLNGSQIKIEYAR 89
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS-KGFGFVKYATIEEASKG 101
S NL+V L TT L E F ++G++ DR++ YS +GF F+ Y +EEA
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAA 69
Query: 102 IQGMDGKFLDGWVIFAEYAK 121
+ + G L+G I EYA+
Sbjct: 70 KEALQGANLNGSQIKIEYAR 89
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS-KGFGFVKYATIEEASKG 101
S NL+V L TT L E F ++G++ DR++ YS +GF F+ Y +EEA
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAA 69
Query: 102 IQGMDGKFLDGWVIFAEYAK 121
+ + G L+G I EYA+
Sbjct: 70 KEALQGANLNGSQIKIEYAR 89
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYS-KGFGFVKYATIEEASKG 101
S NL+V L TT L E F ++G++ DR++ YS +GF F+ Y +EEA
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI-------DRITVYSSRGFAFIYYRHVEEAVAA 69
Query: 102 IQGMDGKFLDGWVIFAEYAK 121
+ + G L+G I EYA+
Sbjct: 70 KEALQGANLNGSQIKIEYAR 89
>AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19103072-19104753 REVERSE
LENGTH=202
Length = 202
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+ VSG+++ T E + F FGE+ + + DR SGY KG+ ++Y EEA I M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 106 DGKFLDGWVIFAEYAKSS-PAPGQ 128
+G L + ++A SS P+ G+
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGE 180
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 43 STNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGI 102
++ + V L T+ + L+ EF+ FGE+ +++ D SKG+ F+++ + ++A I
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98
Query: 103 QGMDGKFLDGWVIFAEYAKSSPAPGQQ 129
+ MD + +G +I+ + AK PG++
Sbjct: 99 ETMDRRMYNGRMIYIDIAK----PGKR 121
>AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=201
Length = 201
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
++ P T L+V+GL+ R T + L FAK G+V +V + + S+GF FV +++++
Sbjct: 80 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 139
Query: 98 ASKGIQGMDGKFLDGWVIFAE 118
A + I+ ++ L+G I E
Sbjct: 140 AERCIKYLNQSVLEGRYITVE 160
>AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953708-16955127 REVERSE LENGTH=207
Length = 207
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 38 QMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEE 97
++ P T L+V+GL+ R T + L FAK G+V +V + + S+GF FV +++++
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 125
Query: 98 ASKGIQGMDGKFLDGWVIFAE 118
A + I+ ++ L+G I E
Sbjct: 126 AERCIKYLNQSVLEGRYITVE 146
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 29/139 (20%)
Query: 3 MRAAVAAPR---GLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPS-----TNLFVSGLNKR 54
MR + A P+ G+++ + T + P + + P + P T + V+ L++
Sbjct: 188 MRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQN 247
Query: 55 TTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFL---- 110
T E+L++ F++ GEV++ ++ +KG+G+V++ T A + +Q M G+ +
Sbjct: 248 VTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQA 301
Query: 111 -----------DGWVIFAE 118
DGWV A+
Sbjct: 302 VRISWSKNPGQDGWVTQAD 320
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
LFV G++ TT E F KFGEVV + ++TDR++G +GFGFV +A A K ++
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVV-HARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
NLF+ L+ + L + F+ FG + + +++ D +G S+GFGF+ Y + E + I+
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 104 GMDGKFLDGWVIFAEYAKSSPAPGQQ---PANNM---TNPYARQ 141
M G++L I YA G++ PA + TNP A++
Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQK 216
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 37 RQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIE 96
++M +N++V +N T E+LR+ F++ G + +++ D G SKGFGFV ++T E
Sbjct: 297 QKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPE 355
Query: 97 EASKGIQGMDGKFLDGWVIFAEYAK 121
EA ++ G+ G ++ A+
Sbjct: 356 EAIDAVKTFHGQMFHGKPLYVAIAQ 380
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 48 VSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
V+ L++ T L E F FG V V D+ +G S+GFGFV + + E+A + I ++G
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
Query: 108 KFLDGWVIFAEYAKSSP 124
D ++ E+A P
Sbjct: 304 YGYDNLILRVEWATPRP 320
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQG 104
N+FV L+ T L + F+ F ARV+ D+ +G S+GFGFV + ++A I
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 105 MDGKFLDGWVIFAEYA 120
M+GK++ I +A
Sbjct: 209 MNGKWVSSRQIRCNWA 224
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 33/139 (23%)
Query: 3 MRAAVAAPR---GLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPS-----TNLFVSGLNKR 54
MR + A P+ G+++ + T T PS+ P + P T + V+ L++
Sbjct: 188 MRISAATPKKNVGVQQQYVTKVTVPSA----VAAPVQAYVAPPESDVTCTTISVANLDQN 243
Query: 55 TTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFL---- 110
T E+L++ F++ GEV++ ++ +KG+G+V++ T A + +Q M G+ +
Sbjct: 244 VTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQA 297
Query: 111 -----------DGWVIFAE 118
DGWV A+
Sbjct: 298 VRISWSKNPGQDGWVTQAD 316
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
P ++FV L T L+E F + V A+VVTD +G SKG+GFVK+A E ++
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 101 GIQGMDGKF 109
+ M+G +
Sbjct: 174 AMAEMNGLY 182
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 48 VSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
V+ L++ T L E F FG V V D+ +G S+GFGFV + + E+A + I ++G
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 108 KFLDGWVIFAEYAKSSP 124
D ++ E+A P
Sbjct: 277 YGYDNLILRVEWATPRP 293
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + E LR+ + GE+ R++ DR SG SKG+ FV + T + A K I+
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 104 GMDGKFLDGWVI 115
+ K G I
Sbjct: 156 ELHSKEFKGKTI 167
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV G+ K T+ E L++ F+++G V+ A V ++V+G +GFGFV++A + K ++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR-- 65
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQP 130
D F+ G + A QQP
Sbjct: 66 DTHFILGKPVDVRKAIRKHELYQQP 90
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
+FV GL T TE L E F ++GE+ + V D++SG SKG+GF+ Y +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++VS + +KL F+KFGE+ + D+ +G KGF Y + E A + ++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE-E 305
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYA 139
K +G ++ + A P PG+Q ++ NP+A
Sbjct: 306 PHKTFEGHILHCQKAIDGPKPGKQQQHHH-NPHA 338
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
+FV GL T TE L E F ++GE+ + V D++SG SKG+GF+ Y +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++VS + +KL F+KFGE+ + D+ +G KGF Y + E A + ++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE-E 305
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYA 139
K +G ++ + A P PG+Q ++ NP+A
Sbjct: 306 PHKTFEGHILHCQKAIDGPKPGKQQQHHH-NPHA 338
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
+FV GL T TE L E F ++GE+ + V D++SG SKG+GF+ Y +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++VS + +KL F+KFGE+ + D+ +G KGF Y + E A + ++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE-E 305
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYA 139
K +G ++ + A P PG+Q ++ NP+A
Sbjct: 306 PHKTFEGHILHCQKAIDGPKPGKQQQHHH-NPHA 338
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
+FV GL T TE L E F ++GE+ + V D++SG SKG+GF+ Y +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++VS + +KL F+KFGE+ + D+ +G KGF Y + E A + ++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE-E 305
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYA 139
K +G ++ + A P PG+Q ++ NP+A
Sbjct: 306 PHKTFEGHILHCQKAIDGPKPGKQQQHHH-NPHA 338
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
+FV GL T TE L E F ++GE+ + V D++SG SKG+GF+ Y +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
++VS + +KL F+KFGE+ + D+ +G KGF Y + E A + ++
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE-E 305
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYA 139
K +G ++ + A P PG+Q ++ NP+A
Sbjct: 306 PHKTFEGHILHCQKAIDGPKPGKQQQHHH-NPHA 338
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + E LR+ + GE+ R++ DR SG SKG+ FV + T + A K I+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 104 GMDGKFLDGWVI 115
+ K G I
Sbjct: 176 ELHSKEFKGKTI 187
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + E LR+ + GE+ R++ DR SG SKG+ FV + T + A K I+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 104 GMDGKFLDGWVI 115
+ K G I
Sbjct: 176 ELHSKEFKGKTI 187
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ L+VS L+ T + F+ FG+V V+ DR + S+G FV Y + E+A+K +
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 104 GMDGKFLDG 112
MD K L+G
Sbjct: 117 SMDAKILNG 125
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T ++V GL T E L F +FGE++H VV DR + S+G+GFV + E A++ +
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 104 G----MDGKFLDGWVIFAEYAKSSPAPGQQPAN 132
++G+ + + F AK P QP+N
Sbjct: 73 DPNPTIEGRITNCKLAFVG-AKVKPNQS-QPSN 103
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 37 RQMGEPSTNLFVSGLNKRTTTEKLREEF-AKFGEVVHARVVTDRVSGYSKGFGFVKYATI 95
RQ P +FV L T L E F A + V A+VV DR +G SKG+GFV++A
Sbjct: 166 RQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 96 EEASKGIQGMDGKFL 110
E + + M+G++
Sbjct: 226 SEQIRAMTEMNGQYC 240
>AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=423
Length = 423
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV+ L RT+ +++ F F EVV R++ D+ SG G G+ ++A+ EA K ++
Sbjct: 299 LFVTNLPPRTSIQRMLYFFQDF-EVVRVRLIVDQ-SGKHMGCGYFEFASANEAEKALEQR 356
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQ 129
+GK L IF E A+ +P P Q
Sbjct: 357 NGKSLRYHKIFLELAEIAPYPLQH 380
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 39 MGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
M LFV G++ T +KLRE F +GEV A V+ D+++G +GFGFV ++
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFS 55
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV L RTT + LR F +FG+VV A VV++ G SKG+GF+ + + +Q
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
Query: 104 G----MDGK 108
+DG+
Sbjct: 72 NSKPIIDGR 80
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +FV GL+ T L F++FG+++ +++ +R +G S+GFGF+ +A + I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 104 GMDGKFLDGWVI 115
M G+ VI
Sbjct: 67 EMHGRDFGDRVI 78
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV LNK+ T +++ E F +FG V ++ D S+G GFVKY++ E A I G+
Sbjct: 138 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 196
Query: 106 DGKF 109
+G +
Sbjct: 197 NGTY 200
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
N+FV GL TT E L+ F +GE+ VV D+ +G +KGFGFV + T
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV LNK+ T +++ E F +FG V ++ D S+G GFVKY++ E A I G+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271
Query: 106 DGKF 109
+G +
Sbjct: 272 NGTY 275
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV LNK+ T +++ E F +FG V ++ D S+G GFVKY++ E A I G+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271
Query: 106 DGKF 109
+G +
Sbjct: 272 NGTY 275
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+FV GL + TT+ + + F K+GE+ + ++ DR +G +GFGFV YA K IQ
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+ +F+ GL + E LR+ + GE+ R++ DR SG SKG+ FV + T + A K I+
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 104 GMDGK 108
+ K
Sbjct: 176 ELHSK 180
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 2 AMRAAVAAPRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLR 61
AMR A PR PS FT + T +T +FV GL+ T E L+
Sbjct: 270 AMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTI------NTTIFVGGLDSSVTDEDLK 323
Query: 62 EEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAK 121
+ F++FGE+V ++ KG GFV++ A + ++ ++G + + + +
Sbjct: 324 QPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
Query: 122 S--SPAPGQQPANNMTNPY 138
+ + P + N +PY
Sbjct: 378 NPANKQPRDKYGNQWVDPY 396
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FV + T E+LRE + G VV R+VTDR +G KG+GF +Y E A + +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 106 DGKFLDGWVIFAEYAKS 122
++G + ++A++
Sbjct: 71 QSYEINGRQLRVDFAEN 87
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 35 TTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYAT 94
TT+ GE L+V L T+ +L + F + G VV ++V D+V+ S+GFGFV +
Sbjct: 108 TTQASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 95 IEEASKGIQGMDGKFLDGWVI 115
IEEA + +Q + + G +
Sbjct: 167 IEEAKEAMQMFNSSQIGGRTV 187
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 42 PSTNLFVSGLNKRTTTEKLREEFAK-FGEVVHARVVTDRVSGYSKGFGFVKYATIEEASK 100
P +FV L T L + F +G V A+VV DR +G SKG+GFV++A E +
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 101 GIQGMDGKF 109
+ M+G++
Sbjct: 212 AMTEMNGQY 220
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 47 FVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMD 106
FV GL++ T + L + F+KFG V+ ++++ DR +G S+ FGFV + + + I MD
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%)
Query: 44 TNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
T +FV GL T E + + F K+G+++ A +++D+++ SKG+GFV + + A++ +
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 45 NLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
N+FV G TT E L+ F +GE+ VV D+ +G KG+GFV + T + A + ++
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 13 LRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVH 72
L L C+ S SS ++ R + +FV GL TT E L F +GE+
Sbjct: 75 LVDLVCSASRIGSSIYSAVVEAADRDV--THRKIFVYGLPWETTRETLVGVFEGYGEIEE 132
Query: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
VV D+ +G +KGFGFV + T + A + ++
Sbjct: 133 CTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
+FV L+K + E L++ F GEV R++ + + SKG F+++AT+E+A + ++ +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 106 DGKFLDG 112
++G
Sbjct: 276 KSPMING 282
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGM 105
LFV GL TT E+L E F+KFG++ +V D+ + +G FV Y E A + +
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 106 DGKFLDGWVIFAEYAKSSPAPGQQPANNMTNP 137
D G + AK +Q N+ P
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAKQVDNSSNLP 320
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 13 LRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVH 72
L L C+ S SS ++ R + +FV GL TT E L F +GE+
Sbjct: 75 LVDLVCSASRIGSSIYSAVVEAADRDV--THRKIFVYGLPWETTRETLVGVFEGYGEIEE 132
Query: 73 ARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
VV D+ +G +KGFGFV + T + A + ++
Sbjct: 133 CTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 48 VSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDG 107
V+ L++ T L E F FG V V D+ + S+GFGFV + + E+A + I ++G
Sbjct: 210 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 269
Query: 108 KFLDGWVIFAEYA 120
D ++ E++
Sbjct: 270 YGYDNLILRVEWS 282
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+F+ GL+K TT + F K+GE+ + ++ DR +G +GFGF+ +A K I+
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 23 SPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEF--AKFGEVVHARVVTDRV 80
+P SP L P G+ L+VS L + + LRE F A F V ARVV
Sbjct: 177 TPKSPNDLPSPAP----GDTRHKLYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADP 231
Query: 81 SGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQ----PANNMT 135
G S G+GFV +AT EEA I ++GK + G I +++ S + + ANN +
Sbjct: 232 EGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNAS 290
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 34 PTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYA 93
PT + E LF L + L + FA+F A+V+ D+ +G +KG+GFV +
Sbjct: 127 PTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFL 186
Query: 94 TIEEASKGIQGMDGKFL 110
+ + ++ M+GK++
Sbjct: 187 NPADLAAALKEMNGKYV 203
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G + +FV GL+ T +L F ++G++ +++ R +G +GFGF+ + A
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQPANNM 134
I+ M G+ L VI K+ P G + + +
Sbjct: 68 DAIKHMHGRELGNKVISVN--KAEPKVGGEDVDQL 100
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 40 GEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAS 99
G + +FV GL+ T +L F ++G++ +++ R +G +GFGF+ + A
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 100 KGIQGMDGKFLDGWVIFAEYAKSSPAPGQQPANNM 134
I+ M G+ L VI K+ P G + + +
Sbjct: 68 DAIKHMHGRELGNKVISVN--KAEPKVGGEDVDQL 100
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 46 LFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQ 103
+F+ GL+K TT + F K+GE+ + ++ DR +G +GFGF+ +A K I+
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78