Miyakogusa Predicted Gene

Lj4g3v2693610.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2693610.1 Non Chatacterized Hit- tr|G5AGE6|G5AGE6_PHYSP
Putative uncharacterized protein OS=Phytophthora
sojae,26.85,2e-18,Nuf2,Kinetochore protein Nuf2; KINETOCHORE PROTEIN
NUF2,NULL; MEMBRALIN/KINETOCHORE PROTEIN NUF2,NUL,CUFF.51521.1
         (331 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61000.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   294   5e-80

>AT1G61000.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: mitosis; LOCATED IN: plasma membrane;
           EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s:
           Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972
           Blast hits to 29793 proteins in 2070 species: Archae -
           902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156;
           Plants - 2312; Viruses - 158; Other Eukaryotes - 12412
           (source: NCBI BLink). | chr1:22471096-22474046 REVERSE
           LENGTH=440
          Length = 440

 Score =  294 bits (753), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 219/327 (66%), Gaps = 2/327 (0%)

Query: 3   VSNYEYPRLRRPEIAAILAQFQIANVTEQDISNPNPDLIYNLYTRILIHLDFLLEEDNEQ 62
           +S YEYPRL R +I   L   QIA+VTE D+  P  D +  LYTRILI+LD L EE+  Q
Sbjct: 1   MSAYEYPRLSRSDIITALKDAQIASVTETDLKTPTSDFVSELYTRILIYLDALDEEEKGQ 60

Query: 63  LNFDDLEQLENPDLHVESVRAIKLYTKIKELLDALECPRKFTFADLLMPEPQKTEFFLGA 122
           ++F+ LEQLENPD H  S++A+KLY K+K++L+ L+CP   +F DLL PE  +TEFF+ A
Sbjct: 61  VDFEALEQLENPDHHATSMQAMKLYCKVKDMLEMLDCPLPISFKDLLRPESSRTEFFISA 120

Query: 123 LLNFCLDRDSRMNSISEIVDEFNALEMQRTELEENRILQLKAEISECNEAREREMPLVQE 182
           LLN+ L +DS+M+ I    +E   L+ QR +  E ++ QL AEI E +EA ER++P VQE
Sbjct: 121 LLNYGLYKDSKMDLIRPKAEELGLLDEQRKQC-EAKVAQLNAEIGEFDEAVERDLPFVQE 179

Query: 183 VDAKVRELRQTIGALNHKQVSLRTTIKKLKEDKDPEMDQKISNAEFTLVQSVQENVNLRS 242
           ++A + +L + I  LN++Q+SLR T +K++E K  +MD +IS AEF LV++VQEN NLRS
Sbjct: 180 LEANIEQLNKKILELNNQQMSLRATFQKMRE-KSTQMDNEISKAEFDLVETVQENANLRS 238

Query: 243 KIAQSPDKIQXXXXXXXXXXXXXXXXXXXYMQTFHEKSALVEVYSKVQKKMSKHYQQMQA 302
           +I QSPDK+Q                    M TF EK+A++EV+ K  KK+ K   Q+Q 
Sbjct: 239 QIVQSPDKLQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQL 298

Query: 303 IQEQVNSAKSIEKDLKELKAKLSDEEV 329
           I EQV +AK++EK+ K LK KLS++ V
Sbjct: 299 INEQVTNAKTVEKEFKALKDKLSEDGV 325