Miyakogusa Predicted Gene
- Lj4g3v2692430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2692430.1 tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase
Q1 OS=Medicago truncatula GN=MTR_2g006440 PE=4 SV=,77.35,0,recQ_fam:
ATP-dependent DNA helicase, RecQ family,DNA helicase, ATP-dependent,
RecQ type; P-loop con,CUFF.51500.1
(734 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 811 0.0
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 773 0.0
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 354 1e-97
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 346 3e-95
AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:1... 291 1e-78
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 285 1e-76
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 206 3e-53
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 203 3e-52
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:979424... 134 2e-31
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 77 6e-14
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 75 2e-13
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 74 3e-13
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 74 5e-13
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 69 8e-12
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 65 2e-10
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 64 3e-10
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 64 3e-10
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 64 4e-10
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 63 1e-09
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 62 1e-09
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 62 1e-09
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 61 3e-09
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 61 3e-09
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 60 8e-09
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 58 2e-08
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 58 2e-08
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 57 3e-08
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 57 5e-08
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 56 7e-08
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 55 1e-07
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 55 2e-07
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 54 4e-07
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 54 5e-07
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 54 5e-07
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 54 5e-07
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 53 6e-07
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 53 8e-07
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 52 1e-06
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 52 1e-06
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 52 1e-06
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/563 (68%), Positives = 448/563 (79%), Gaps = 10/563 (1%)
Query: 177 IVEQYQSSCTPQPSMSRLPPITPTADKDNFAGHDNL-LPPELCVDCSHGCKLGHCPEAAS 235
++E Y S+ TPQPS+S TP D+ + LPPELC +CSHG KLG CPEA++
Sbjct: 226 VMEHYHSTSTPQPSVSNFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEAST 285
Query: 236 HLQELKDNLIVISNELLDNVENLSSTDISKLHQDRSQLKKQIQQLEKYIHSSNLAEERQK 295
H++++KD L+ ISNELLD+ +LS + +L Q+R +LKKQIQQLE +I +E QK
Sbjct: 286 HVEQMKDVLLAISNELLDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRD----KESQK 341
Query: 296 SHFSASTAPPTSFVYETPRQPFLSSGPKTYDSQAYMGN-GTYGXXXXXX---XXXXXDRY 351
S F +STA F YETP+ D +A++ + G Y DRY
Sbjct: 342 SQFLSSTATRI-FQYETPKSTNYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRY 400
Query: 352 GMPSGPVEREAFIPKNIEVNYIEGSGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQRE 411
G+ S PVERE ++PK I+V Y EGS DK+WSS++FPWT+ LEVNNK+VFGNHSFRPNQRE
Sbjct: 401 GLSSAPVEREQYVPKIIDVTYTEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQRE 460
Query: 412 VINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPA 471
+INATMSG DVFVLMPTGGGKSLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA
Sbjct: 461 IINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPA 520
Query: 472 VCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVI 531
LSA +EW+EQ +I +ELNS++ KYKLLYVTPEKVA+SD LLR LENL+ R LL+R VI
Sbjct: 521 ASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 580
Query: 532 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFR 591
DEAHCVSQWGHDFRPDYQ LGILKQKFPN PV SVKEDVVQALGL+NC++FR
Sbjct: 581 DEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR 640
Query: 592 QSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKC 651
QSFNRPNLWYSVVPKTKKC+EDIDKFI+ENHFDECGIIYCLSRMDCEKV+E+LQE GHK
Sbjct: 641 QSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKA 700
Query: 652 TYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 711
+YHG+M+P QRAF+Q QWSKDE+NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE
Sbjct: 701 AFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 760
Query: 712 CGRAGRDGQRSSCVLYYNYGDYV 734
CGRAGRDGQRSSCVLYY YGDY+
Sbjct: 761 CGRAGRDGQRSSCVLYYGYGDYI 783
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/778 (54%), Positives = 502/778 (64%), Gaps = 70/778 (8%)
Query: 8 PQTNWSQHANAQHNFASQAKFLSSNFLFSLPTHKSPSYQEPPPGTGSQRFVLRQSQGSER 67
PQTNW + A A S KF+ SNFL+SL + K +E + Q R
Sbjct: 41 PQTNWLKVAKAFECIPSLNKFMGSNFLYSLESQKLGRDREMA-ARSIENIAPVTVQTLAR 99
Query: 68 VQVDKAWLAIT-------------TP----QNSTRNYVQPGETVKVTPQLHESMAATSFQ 110
Q++KAW + TP +++R G T KVT S A
Sbjct: 100 PQIEKAWCTLINLSINNTYLRPGITPAIDNDSTSRTSSTKGSTFKVTSNADGSFCA---- 155
Query: 111 GSHENNMPRHSD-----------------VTTTPIVINH----RSQVLDS-SVNNHTKYT 148
+N P HS V I+I+ +V DS +V N +
Sbjct: 156 ----HNHPEHSQRSVRGTAKSIDSFSSSSVGDNKIIIDKVPRVNYEVRDSVTVTNGMEMP 211
Query: 149 DQINESTKCMPVH-XXXXXXXXXXXXXXQIVEQYQ-------SSCTPQPSMSRLPPITPT 200
N + PV +I++ Q S+CT QPS+S+ I T
Sbjct: 212 PIKNSAQLARPVEPREVSLGEIDYDDIMEIIDVDQIAMEHCPSTCTKQPSVSKFVDIF-T 270
Query: 201 ADKDNFAGHDNLLPPELCVDCSHGCKLGHCPEAASHLQELKDNLIVISNELLDNVENLSS 260
+ ++ G LPPE+C +CSHG KLG CPEA++H++++KD L+ ISNE+LDN +L
Sbjct: 271 SRREEEQG----LPPEICSNCSHGIKLGLCPEASTHVEQMKDTLLAISNEILDNTYDLGP 326
Query: 261 TDISKLHQDRSQLKKQIQQLEKYIHSSNLAEERQKSHFSASTAPPTSFVYETPRQPFLSS 320
+ +LHQ R LKKQIQQLE IH+ +ER+KS S P + YETP+ L
Sbjct: 327 DHVEQLHQKRLLLKKQIQQLEILIHN----KERKKSQCLVSI-PSHNTQYETPQTTNLEV 381
Query: 321 GPKTYDSQAYMGNG----TYGXXXXXXXXXXXDRYGMPSGPVEREAFIPKNIEVNYIEGS 376
DS ++ T +RY + SG ERE + + I+V E S
Sbjct: 382 VYGQTDSPTHVKEQGRCVTDNWNMPRDYLVSKERYDISSGSEEREQSVSEVIDVTDTESS 441
Query: 377 GDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTY 436
DK+W+S DFPWTK+LEV NK VFGNHSFRPNQRE+INATMSGCDVFVLMPTGGGKSLTY
Sbjct: 442 NDKKWTSSDFPWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTY 501
Query: 437 QLPALICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCK 496
QLPAL+C GITLVISPLVSLIQDQIM+LLQ NI A LSA +EW+EQ EIL+EL+S+ K
Sbjct: 502 QLPALLCAGITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSK 561
Query: 497 YKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQ 556
YKLLYVTPEKVA+S+ LLR LE L+ R LL+R VIDEAHCVSQWGHDFRPDYQGLG+LKQ
Sbjct: 562 YKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQ 621
Query: 557 KFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDK 616
KFPN P+ SVKEDVVQALGL+NC++FRQSFNRPNLWYSVVPKT KC+EDIDK
Sbjct: 622 KFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDK 681
Query: 617 FIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVN 676
FIRENHFDECGIIYCLSRMDCEKV E L+ GHK +YHG+MDP +RAFVQKQWSKDE+N
Sbjct: 682 FIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEIN 741
Query: 677 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGDYV 734
IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY+Y DY+
Sbjct: 742 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYI 799
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 354 bits (909), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 232/361 (64%), Gaps = 5/361 (1%)
Query: 376 SGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLT 435
S + WS + F W + VFG +R NQ+E+INA M+G DV V+M GGGKSL
Sbjct: 62 SAIENWS-ETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLC 120
Query: 436 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYC 495
YQLPA++ G TLV+SPL+SLIQDQ+M L I A L++ ++ + + L
Sbjct: 121 YQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGED 180
Query: 496 KYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILK 555
K+LYVTPEKV++S + +LE H LS I IDEAHC SQWGHDFRPDY+ L ILK
Sbjct: 181 DLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILK 240
Query: 556 QKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKT---KKCVE 612
+FP P+ V+ D+++ L + C+ F S NRPNL+YSV K+ K V+
Sbjct: 241 TQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVD 300
Query: 613 DIDKFIRENHF-DECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWS 671
+I +FIRE++ +E GI+YC SR +CE++A L+E G YYH +MD R V +WS
Sbjct: 301 EIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWS 360
Query: 672 KDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYG 731
K+++ +I TVAFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++
Sbjct: 361 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSA 420
Query: 732 D 732
D
Sbjct: 421 D 421
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 174/354 (49%), Positives = 231/354 (65%), Gaps = 2/354 (0%)
Query: 382 SSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPAL 441
S ++ DLE N +FGN FRP Q + A+M D FVLMPTGGGKSL YQLPA
Sbjct: 184 SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPAT 243
Query: 442 ICPGITLVISPLVSLIQDQIMHL-LQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLL 500
+ G+T+VISPL+SLIQDQI+ L L+ IPA L++ S+ +L+EL D KLL
Sbjct: 244 LKAGVTIVISPLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLL 303
Query: 501 YVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 560
YVTPEK+A S L L L + LL+ V+DEAHCVSQWGHDFRPDY+ LG LKQ FP
Sbjct: 304 YVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPR 363
Query: 561 TPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRE 620
PV SV +DV+++L + + + SF+R NL Y V+ KTK+ ++ + + +R+
Sbjct: 364 VPVMALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRD 423
Query: 621 NHFDECGIIYCLSRMDCEKVAEKLQE-CGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIIC 679
D+ GI+YCLS+ +C VA+ L E C K YYH + QR VQ++W EV I+C
Sbjct: 424 RFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVC 483
Query: 680 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGDY 733
AT+AFGMGI+K DVRFVIH++L K++E Y+QE GRAGRDG ++ C+ Y D+
Sbjct: 484 ATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDF 537
>AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 |
chr1:11233174-11237412 FORWARD LENGTH=580
Length = 580
Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 190/292 (65%), Gaps = 4/292 (1%)
Query: 445 GITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTP 504
G TLV+SPL+SLIQDQ+M L I A L++ ++ + + L K+LYVTP
Sbjct: 5 GTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTP 64
Query: 505 EKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVX 564
EKV++S + +LE H LS I IDEAHC SQWGHDFRPDY+ L ILK +FP P+
Sbjct: 65 EKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 124
Query: 565 XXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKT---KKCVEDIDKFIREN 621
V+ D+++ L + C+ F S NRPNL+YSV K+ K V++I +FIRE+
Sbjct: 125 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRES 184
Query: 622 HF-DECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICA 680
+ +E GI+YC SR +CE++A L+E G YYH +MD R V +WSK+++ +I
Sbjct: 185 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVG 244
Query: 681 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
TVAFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++ D
Sbjct: 245 TVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSAD 296
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 199/335 (59%), Gaps = 4/335 (1%)
Query: 400 FGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 459
FG+ FR Q E I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 460 QIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLEN 519
Q+M L + I A LS+ + +I +L+S +LLYVTPE +A +L+ L
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRK 150
Query: 520 LHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 579
LH R LL+ I IDEAHC+S WGHDFRP Y+ L L+ + PV V++DV+
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 580 QALGLINCIIFRQSFNRPNLWYSVVPK--TKKCVEDIDKFIRENHFDECGIIYCLSRMDC 637
+L L N ++ + SFNRPN++Y V K D+ ++ + + C IIYCL R C
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLK-SCGNICAIIYCLERTTC 269
Query: 638 EKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVI 697
+ ++ L G YH ++ R+ V W + II ATVAFGMGI+K DVR V
Sbjct: 270 DDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVC 329
Query: 698 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
H ++PKS+E ++QE GRAGRD S VLYY D
Sbjct: 330 HFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDD 364
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 152/273 (55%), Gaps = 4/273 (1%)
Query: 462 MHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLH 521
M L + I A LS+ + +I +L+S +LLYVTPE +A +L+ L LH
Sbjct: 1 MALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRKLH 59
Query: 522 VRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQA 581
R LL+ I IDEAHC+S WGHDFRP Y+ L L+ + PV V++DV+ +
Sbjct: 60 SRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDS 119
Query: 582 LGLINCIIFRQSFNRPNLWYSVVPK--TKKCVEDIDKFIRENHFDECGIIYCLSRMDCEK 639
L L N ++ + SFNRPN++Y V K D+ ++ + + C IIYCL R C+
Sbjct: 120 LNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLK-SCGNICAIIYCLERTTCDD 178
Query: 640 VAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHH 699
++ L G YH ++ R+ V W + II ATVAFGMGI+K DVR V H
Sbjct: 179 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 238
Query: 700 SLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
++PKS+E ++QE GRAGRD S VLYY D
Sbjct: 239 NIPKSMESFYQESGRAGRDQLPSRSVLYYGVDD 271
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 187/340 (55%), Gaps = 11/340 (3%)
Query: 399 VFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 458
V+G SFR Q + I + G +++PTG GKSL YQ+PA+I PGITLV+SPLVSL+
Sbjct: 264 VYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMI 323
Query: 459 DQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLE 518
DQ+ HL + I LS++ E E LR+L K +L+V+PE++ + L
Sbjct: 324 DQLKHL-PSIIKGGLLSSSQRPEEATETLRKLKEGIIK--VLFVSPERLLNVEFLSMFRM 380
Query: 519 NLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGL--GILKQKFPNTPVXXXXXXXXXSVKE 576
+L V S +V+DEAHCVS+W H+FRP Y L +L + + +
Sbjct: 381 SLSV----SLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQ 436
Query: 577 DVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECG--IIYCLSR 634
V+ +L + + + ++S R N SV ++D+ + + E I+YC +
Sbjct: 437 AVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ 496
Query: 635 MDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVR 694
+ + +++ L++ YH + R +Q+ + +++ ++ ATVAFGMG++K DV
Sbjct: 497 YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVG 556
Query: 695 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGDYV 734
VIH S+P S+E Y QE GRAGRDG+ S C L+Y+ Y+
Sbjct: 557 AVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYL 596
>AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM |
chr5:9794244-9798637 REVERSE LENGTH=858
Length = 858
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 18/226 (7%)
Query: 388 WTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGIT 447
W K + + FG S R QRE ++ ++ D VL TG GKSL +Q+PAL+ +
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 448 LVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKV 507
+VISPL+SL+ DQ + L + + A L S Q + E + Y+++YV PE V
Sbjct: 212 VVISPLISLMHDQCLKLSRHKVSACFLG-----SGQLDNCIEEKAMQGMYQIIYVCPETV 266
Query: 508 ARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-------- 559
R L++ L+ L ++ IDEAHCVS+WGHDFRP Y+ L +L++ F
Sbjct: 267 VR---LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLE 323
Query: 560 -NTPVXXXXXXXXXSVKEDVVQALGLIN-CIIFRQSFNRPNLWYSV 603
+ P+ +V+ED++++L L I SF RPNL +SV
Sbjct: 324 YDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSV 369
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
IIY +R + +A+ L G K Y+ ++ V + + +++ ++ AT+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 727
I+K +VR +IH+ +S+E Y+QE GRAGRDG+ + CVLY
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 145/358 (40%), Gaps = 67/358 (18%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPG-----------ITLVISPL-- 453
P Q + M G D+ + TG GK+L+Y LPA++ I LV++P
Sbjct: 124 PIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRE 183
Query: 454 --VSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSD 511
V + Q+ + I C+ + Q +R+L +++ TP ++
Sbjct: 184 LAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQ---VRDLQKGV---EIVIATPGRL---- 233
Query: 512 VLLRQLENLHVRELLSRIVIDEAHCVSQWGHD---------FRPDYQGL----------G 552
+ + + N ++R + + +V+DEA + G D RPD Q L
Sbjct: 234 IDMMESNNTNLRRV-TYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVE 292
Query: 553 ILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVE 612
L +KF P + Q +++ I Q +N K K +E
Sbjct: 293 QLSKKFLYNPYKVIIGSSDLKANRAIRQ---IVDVISESQKYN----------KLVKLLE 339
Query: 613 DIDKFIRENHFDECGIIYCL-SRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWS 671
DI D I+ L ++ C+++ +L+ G HG+ A+R +V ++
Sbjct: 340 DI--------MDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFR 391
Query: 672 KDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYN 729
+ I+ AT G++ DV++VI++ P S+E Y GR GR G + + ++
Sbjct: 392 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 143/351 (40%), Gaps = 42/351 (11%)
Query: 401 GNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGIT------------- 447
G P Q+ V+ M G D+ TG GK+L + +P I I
Sbjct: 135 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP--IIDKIIKFNAKHGRGKNPQ 192
Query: 448 -LVISPLVSLIQDQIMHLLQANIPA---VCLSANIEWSEQQEILRELNSDYCKYKLLYVT 503
LV++P L + Q+ + + P+ +CL +Q +RELN + T
Sbjct: 193 CLVLAPTRELAR-QVEKEFRESAPSLDTICLYGGTPIGQQ---MRELN---YGIDVAVGT 245
Query: 504 PEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPV 563
P ++ D++ R NL + +V+DEA + Q G F D + I+ QK P
Sbjct: 246 PGRII--DLMKRGALNLSEVQF---VVLDEADQMLQVG--FAEDVE---IILQKLPAKRQ 295
Query: 564 XXXXXXXXXS-----VKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFI 618
S K+ + L + Q YS+ + I +
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLV 355
Query: 619 RENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNII 678
+E+ I++ ++ D +++A L + +KC HG++ AQR + +I+
Sbjct: 356 KEHGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSIL 414
Query: 679 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYN 729
AT G++ P+V VIH+ LP + E + GR GR G++ S +L +
Sbjct: 415 VATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHG 465
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 610 CVEDIDKFIR-ENHFDECG----IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRA 664
+++ +KF R + DE G I++ ++ +C+ +A+ L + G++ T HG QR
Sbjct: 557 MMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQRE 616
Query: 665 FVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 724
+ + N++ AT G GI+ PDV VI++ +PK IE Y GR GR G+
Sbjct: 617 ISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVA 676
Query: 725 VLYYNYGD 732
+ D
Sbjct: 677 TSFLTLHD 684
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 147/370 (39%), Gaps = 80/370 (21%)
Query: 401 GNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPAL----------------ICP 444
G P Q+ V+ M G D+ TG GK+L + +P + +C
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLC- 181
Query: 445 GITLVISPLVSLIQDQIMHLLQANIPA---VCLSANIEWSEQQEILRELNSDYCKYKLLY 501
LV++P L + Q+ + + P+ +CL +Q +R+L DY +
Sbjct: 182 ---LVLAPTRELAR-QVEKEFRESAPSLDTICLYGGTPIGQQ---MRQL--DYG-VDVAV 231
Query: 502 VTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 561
TP +V D++ R NL + +V+DEA + Q G F D + I+ +K P
Sbjct: 232 GTPGRVI--DLMKRGALNLSEVQF---VVLDEADQMLQVG--FAEDVE---IILEKLPEK 281
Query: 562 PVXXXXXXXXXS-------------VKEDVVQ------ALGLINCIIFRQSFNRPNLWYS 602
S + D+V A G+ I S+ R ++
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
Query: 603 VV---PKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMD 659
+V K KC I++ ++ D ++++ L KC HG++
Sbjct: 342 LVTEHAKGGKC-----------------IVFTQTKRDADRLSYALARS-FKCEALHGDIS 383
Query: 660 PAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 719
+QR + NI+ AT G++ P+V +IH+ LP + E + GR GR G
Sbjct: 384 QSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAG 443
Query: 720 QRSSCVLYYN 729
++ S +L Y+
Sbjct: 444 KKGSAILIYS 453
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 148/350 (42%), Gaps = 44/350 (12%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISP--- 452
P Q + + D+ + TG GK+L Y +PA I P + L+++P
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTV-LILAPTRE 518
Query: 453 LVSLIQDQIMHLLQAN-IPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSD 511
L + IQD+ + +++ I CL Q L+EL ++ TP ++ +D
Sbjct: 519 LATQIQDEALRFGRSSRISCTCLYGGAPKGPQ---LKELERGA---DIVVATPGRL--ND 570
Query: 512 VLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXX 571
+L ++ + + +S +V+DEA + G F P + I+ + P
Sbjct: 571 ILEMKMIDF---QQVSLLVLDEADRMLDMG--FEPQIRK--IVNEIPPRRQTLMYTATWP 623
Query: 572 XSVKE-------DVVQA-LGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHF 623
V++ + VQ +G ++ + ++ + + VVP+ +K +++ +R
Sbjct: 624 KEVRKIASDLLVNPVQVNIGRVDELAANKAITQ---YVEVVPQMEK-ERRLEQILRSQER 679
Query: 624 DECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVA 683
II+C ++ C+ +A + HG+ +R +V Q+ + ++ AT
Sbjct: 680 GSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDV 738
Query: 684 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGDY 733
G++ D+R VI++ P +E Y GR GR G ++ D+
Sbjct: 739 AARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDW 788
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 65/349 (18%)
Query: 416 TMSGCDVFVLMPTGGGKSLTYQLPALICPG-----------ITLVISPLVSL---IQDQI 461
+ G D+ + TG GK+L Y LPAL+ I L+++P L IQ++
Sbjct: 199 ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258
Query: 462 MHL-LQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENL 520
L++ + + C+ Q LR +++ TP ++ D+L Q NL
Sbjct: 259 RKFGLRSGVRSTCIYGGAPKGPQIRDLRR------GVEIVIATPGRLI--DMLECQHTNL 310
Query: 521 HVRELLSRIVIDEAHCVSQWGHD---------FRPDYQGL----------GILKQKFPNT 561
+ ++ +V+DEA + G + RPD Q L L ++F
Sbjct: 311 ---KRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRD 367
Query: 562 PVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIREN 621
P + + Q +I + + +NR + K + D K +
Sbjct: 368 PYKAIIGSTDLKANQSINQ---VIEIVPTPEKYNR-------LLTLLKQLMDGSKIL--- 414
Query: 622 HFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICAT 681
I+ ++ C++V +L+ G HG+ ++R V ++ I+ AT
Sbjct: 415 -------IFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
Query: 682 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNY 730
G++ D++ V+++ P ++E Y GR GR G + ++ +
Sbjct: 468 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTH 516
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 148/378 (39%), Gaps = 41/378 (10%)
Query: 378 DKRWSSQDFPWTKDLEVNN---KRVF-------GNHSFRPNQREVINATMSGCDVFVLMP 427
D R+ ++D TK E + KR G P Q E I ++G D+
Sbjct: 140 DNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAK 199
Query: 428 TGGGKSLTYQLPAL--------ICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIE 479
G GK+ + +P L + + LV + ++L Q+ L + +
Sbjct: 200 NGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGG 259
Query: 480 WSEQQEILRELNSDYCKYKLLYVTPEKV---ARSDVLLRQLENLHVRELLSRIVIDEAHC 536
S + +I+R Y LL TP ++ A+ V + + + V + +++ E
Sbjct: 260 TSLRDDIMRL----YQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQP 315
Query: 537 VSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNR 596
+ F P+ + + + FP T S K+ ++ +IN ++ + +
Sbjct: 316 SIEELIQFLPESRQILMFSATFPVT---------VKSFKDRYLKKPYIIN-LMDQLTLMG 365
Query: 597 PNLWYSVVPKTKK--CVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYY 654
+Y+ V + +K C+ + ++ N II+C S E +A+K+ E G+ C Y
Sbjct: 366 VTQYYAFVEERQKVHCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKITELGYSCFYI 421
Query: 655 HGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 714
H M R V + + T F GI+ V VI+ P++ E Y GR
Sbjct: 422 HAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 481
Query: 715 AGRDGQRSSCVLYYNYGD 732
+GR G V Y D
Sbjct: 482 SGRFGHLGLAVNLVTYED 499
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 58/371 (15%)
Query: 392 LEVNNKRVF--GNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALI------- 442
L N + V+ G + P Q + M D+ + TG GK+L Y +P +
Sbjct: 237 LPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHN 296
Query: 443 ----CPGITLVISP---LVSLIQDQIMHLLQAN-IPAVCLSANIEWSEQ-QEILRELNSD 493
P I LV+SP L + IQ + + +++ I CL Q +EI R ++
Sbjct: 297 DSRMGPTI-LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVD-- 353
Query: 494 YCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGI 553
++ TP ++ +D+L + +LH +S +V+DEA + G F P
Sbjct: 354 -----IVVATPGRL--NDILEMKRISLH---QVSYLVLDEADRMLDMG--FEPQ------ 395
Query: 554 LKQKFPNTPVXXXXXXXXXSVKEDVVQA------------LGLINCIIFRQSFNRPNLWY 601
+++ P + ++V + +G ++ ++ +S +
Sbjct: 396 IRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVL 455
Query: 602 SVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPA 661
+ + K + +++ +R II+C ++ C+++A L HG+ A
Sbjct: 456 APMEKHSR----LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQA 510
Query: 662 QRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 721
+R V Q+ ++ AT G++ D+R V+++ P +E Y GR GR G
Sbjct: 511 ERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAG-- 568
Query: 722 SSCVLYYNYGD 732
++ + Y +GD
Sbjct: 569 ATGLAYTFFGD 579
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 56/345 (16%)
Query: 416 TMSGCDVFVLMPTGGGKSLTYQLPALI-----------CPGITLVISP---LVSLIQDQI 461
M D+ + TG GK+L Y +P + P I LV+SP L + IQ +
Sbjct: 195 AMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI-LVLSPTRELATQIQVEA 253
Query: 462 MHLLQAN-IPAVCLSANIEWSEQ-QEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLEN 519
+ +++ I CL Q +EI R ++ ++ TP ++ +D+L + +
Sbjct: 254 LKFGKSSKISCACLYGGAPKGPQLKEIERGVD-------IVVATPGRL--NDILEMKRIS 304
Query: 520 LHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 579
LH +S +V+DEA + G F P +++ P + ++V
Sbjct: 305 LH---QVSYLVLDEADRMLDMG--FEPQ------IRKIVNEVPTKRQTLMYTATWPKEVR 353
Query: 580 QA------------LGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECG 627
+ +G ++ ++ +S + + + K + +++ +R
Sbjct: 354 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR----LEQILRSQEPGSKI 409
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
II+C ++ C+++A L HG+ A+R V Q+ ++ AT G
Sbjct: 410 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 468
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
++ D+R V+++ P +E Y GR GR G ++ + Y +GD
Sbjct: 469 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAG--ATGLAYTFFGD 511
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 592 QSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEC-GHK 650
++ N+ +W K +K D +NHF ++Y SR+ + +A + G K
Sbjct: 191 KAVNQLAIWVDAKQKKQKL---FDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVK 247
Query: 651 CTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 710
HG +R V + EV ++ +T G G++ VR VI +P +I+ Y
Sbjct: 248 ALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 307
Query: 711 ECGRAGRDGQRSSCVLYYNYGD 732
GRA R G++ + +++ N D
Sbjct: 308 VIGRASRMGEKGTAIVFVNEDD 329
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 146/354 (41%), Gaps = 50/354 (14%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALI-CPG-------------ITLVISP 452
P Q + I A ++G + TG GK+ ++ +P + C + +V++P
Sbjct: 135 PIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAP 194
Query: 453 LVSL---IQDQIMHLLQANIP---AVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEK 506
L ++DQ +L +P A+ + + + I + + +L+ TP +
Sbjct: 195 TRELCVQVEDQ-AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV-------ELIIGTPGR 246
Query: 507 VARSDVLLRQLENLHVREL--LSRIVIDEAHCVSQWGHDFRPD-YQGLGILKQK----FP 559
V D+L + H EL + V+DE C+ Q G FR Q L Q F
Sbjct: 247 VV--DLLSK-----HTIELDNIMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFS 297
Query: 560 NTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIR 619
T KE ++ ++G N ++ N+ +W K +K D
Sbjct: 298 ATISREVEKVGGSLAKEIILVSIG--NPNKPNKAVNQLAIWVDAKQKKQKL---FDILRS 352
Query: 620 ENHFDECGIIYCLSRMDCEKVAEKLQEC-GHKCTYYHGNMDPAQRAFVQKQWSKDEVNII 678
+NHF ++Y SR+ + +A + G K HG +R V + EV ++
Sbjct: 353 QNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVL 412
Query: 679 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
+T G G++ VR VI +P +I+ Y GRA R G++ + +++ N D
Sbjct: 413 VSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 146/354 (41%), Gaps = 50/354 (14%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALI-CPG-------------ITLVISP 452
P Q + I A ++G + TG GK+ ++ +P + C + +V++P
Sbjct: 135 PIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAP 194
Query: 453 LVSL---IQDQIMHLLQANIP---AVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEK 506
L ++DQ +L +P A+ + + + I + + +L+ TP +
Sbjct: 195 TRELCVQVEDQ-AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV-------ELIIGTPGR 246
Query: 507 VARSDVLLRQLENLHVREL--LSRIVIDEAHCVSQWGHDFRPD-YQGLGILKQK----FP 559
V D+L + H EL + V+DE C+ Q G FR Q L Q F
Sbjct: 247 VV--DLLSK-----HTIELDNIMTFVLDEVDCMLQRG--FRDQVMQIFQALSQPQVLLFS 297
Query: 560 NTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIR 619
T KE ++ ++G N ++ N+ +W K +K D
Sbjct: 298 ATISREVEKVGGSLAKEIILVSIG--NPNKPNKAVNQLAIWVDAKQKKQKL---FDILRS 352
Query: 620 ENHFDECGIIYCLSRMDCEKVAEKLQEC-GHKCTYYHGNMDPAQRAFVQKQWSKDEVNII 678
+NHF ++Y SR+ + +A + G K HG +R V + EV ++
Sbjct: 353 QNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVL 412
Query: 679 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
+T G G++ VR VI +P +I+ Y GRA R G++ + +++ N D
Sbjct: 413 VSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 148/388 (38%), Gaps = 61/388 (15%)
Query: 378 DKRWSSQDFPWTKDLEVNN---KRVF-------GNHSFRPNQREVINATMSGCDVFVLMP 427
D R+ ++D TK E + KR G P Q E I ++G D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 428 TGGGKSLTYQLPAL--------ICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIE 479
G GK+ + +P L + + +V + ++L Q+ L ++ +
Sbjct: 177 NGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
Query: 480 WSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEA----- 534
S + +I+R Y LL TP ++ L + + V + S +V+DEA
Sbjct: 237 TSLKDDIMRL----YQPVHLLVGTPGRI-----LDLTKKGVCVLKDCSVLVMDEADKLLS 287
Query: 535 --------HCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLIN 586
H +S F P+ + + + FP T K+ + +IN
Sbjct: 288 QEFQPSVEHLIS-----FLPESRQILMFSATFPVT---------VKDFKDRFLTNPYVIN 333
Query: 587 CIIFRQSFNRPNLWYSVVPKTKK--CVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKL 644
++ + +Y+ V + +K C+ + ++ N II+C S E +A+K+
Sbjct: 334 -LMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKI 388
Query: 645 QECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKS 704
E G+ C Y H M R V + + T F GI+ V VI+ PK+
Sbjct: 389 TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 448
Query: 705 IEGYHQECGRAGRDGQRSSCVLYYNYGD 732
E Y GR+GR G V Y D
Sbjct: 449 AETYLHRVGRSGRFGHLGLAVNLITYED 476
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 148/388 (38%), Gaps = 61/388 (15%)
Query: 378 DKRWSSQDFPWTKDLEVNN---KRVF-------GNHSFRPNQREVINATMSGCDVFVLMP 427
D R+ ++D TK E + KR G P Q E I ++G D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 428 TGGGKSLTYQLPAL--------ICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIE 479
G GK+ + +P L + + +V + ++L Q+ L ++ +
Sbjct: 177 NGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
Query: 480 WSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEA----- 534
S + +I+R Y LL TP ++ L + + V + S +V+DEA
Sbjct: 237 TSLKDDIMRL----YQPVHLLVGTPGRI-----LDLTKKGVCVLKDCSVLVMDEADKLLS 287
Query: 535 --------HCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLIN 586
H +S F P+ + + + FP T K+ + +IN
Sbjct: 288 QEFQPSVEHLIS-----FLPESRQILMFSATFPVT---------VKDFKDRFLTNPYVIN 333
Query: 587 CIIFRQSFNRPNLWYSVVPKTKK--CVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKL 644
++ + +Y+ V + +K C+ + ++ N II+C S E +A+K+
Sbjct: 334 -LMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKI 388
Query: 645 QECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKS 704
E G+ C Y H M R V + + T F GI+ V VI+ PK+
Sbjct: 389 TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 448
Query: 705 IEGYHQECGRAGRDGQRSSCVLYYNYGD 732
E Y GR+GR G V Y D
Sbjct: 449 AETYLHRVGRSGRFGHLGLAVNLITYED 476
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 18/213 (8%)
Query: 526 LSRIVIDEA-HCVSQWGHDFRPDYQGLGILK---QKFPNTPVXXXXXXXXXSVKEDVVQA 581
L +V DEA H ++ G FR D L I+K + PN V +VK+ V +
Sbjct: 239 LKILVFDEADHMLATDG--FRDD--SLKIMKDIGRVNPNFQVLLFSATFNETVKDFVART 294
Query: 582 LGLINCIIFRQ---SFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCE 638
+ N + ++ + + + V PK + +E I I E II+ ++ +
Sbjct: 295 VKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQ 354
Query: 639 KVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIH 698
KV + L E G+ T HGN+ + R + K++ + ++ AT G ++ V V++
Sbjct: 355 KVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVN 414
Query: 699 HSLPKSIEG-------YHQECGRAGRDGQRSSC 724
++LP E Y GRAGR G++ +
Sbjct: 415 YNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAV 447
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 37/376 (9%)
Query: 378 DKRWSSQDFPWTKDLEVNN--------KRVF--GNHSFRPNQREVINATMSGCDVFVLMP 427
D R+ + D TK E + K ++ G P Q E I ++G D+
Sbjct: 110 DTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAK 169
Query: 428 TGGGKSLTYQLPAL--------ICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIE 479
G GK+ + +P L + + LV + ++L Q+ L + +
Sbjct: 170 NGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG 229
Query: 480 WSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQ 539
S + +I+R + LL TP ++ L + + V + + +V+DEA +
Sbjct: 230 TSLRDDIMRL----HQPVHLLVGTPGRI-----LDLTKKGVCVLKDCAMLVMDEADKL-- 278
Query: 540 WGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPN 598
+F+P + L L Q + K+ ++ +IN ++ + +
Sbjct: 279 LSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN-LMDQLTLMGVT 337
Query: 599 LWYSVVPKTKK--CVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHG 656
+Y+ V + +K C+ + ++ N II+C S E +A+K+ E G+ C Y H
Sbjct: 338 QYYAFVEERQKVHCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKITELGYSCFYIHA 393
Query: 657 NMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 716
M R V ++ + T F GI+ V VI+ P++ E Y GR+G
Sbjct: 394 KMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSG 453
Query: 717 RDGQRSSCVLYYNYGD 732
R G V Y D
Sbjct: 454 RFGHLGLAVNLVTYED 469
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 37/376 (9%)
Query: 378 DKRWSSQDFPWTKDLEVNN--------KRVF--GNHSFRPNQREVINATMSGCDVFVLMP 427
D R+ + D TK E + K ++ G P Q E I ++G D+
Sbjct: 110 DTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAK 169
Query: 428 TGGGKSLTYQLPAL--------ICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIE 479
G GK+ + +P L + + LV + ++L Q+ L + +
Sbjct: 170 NGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGG 229
Query: 480 WSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQ 539
S + +I+R + LL TP ++ L + + V + + +V+DEA +
Sbjct: 230 TSLRDDIMRL----HQPVHLLVGTPGRI-----LDLTKKGVCVLKDCAMLVMDEADKL-- 278
Query: 540 WGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPN 598
+F+P + L L Q + K+ ++ +IN ++ + +
Sbjct: 279 LSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN-LMDQLTLMGVT 337
Query: 599 LWYSVVPKTKK--CVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTYYHG 656
+Y+ V + +K C+ + ++ N II+C S E +A+K+ E G+ C Y H
Sbjct: 338 QYYAFVEERQKVHCLNTLFSKLQINQ----SIIFCNSVNRVELLAKKITELGYSCFYIHA 393
Query: 657 NMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 716
M R V ++ + T F GI+ V VI+ P++ E Y GR+G
Sbjct: 394 KMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSG 453
Query: 717 RDGQRSSCVLYYNYGD 732
R G V Y D
Sbjct: 454 RFGHLGLAVNLVTYED 469
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+C ++ D + + E L G + HG D R + + + +++ AT G
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKG 460
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYN 729
++ PD++ VI++ +P IE Y GR GR G+ + N
Sbjct: 461 LDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+++ L +++ E++ LQ+ G K HGN ++R + + ++ AT G
Sbjct: 370 LVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARG 429
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYN 729
++ PDV VI+++ P + E Y GR GR G++ ++
Sbjct: 430 LDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+C ++ D + + E L G + HG D R + + + +++ AT G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYN 729
++ PD++ VI++ +P IE Y GR GR G+ + N
Sbjct: 412 LDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 606 KTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGH-KCTYYHGNMDPAQRA 664
+ KK ++D+ D+ I++ +R + + + L++ G + T H QR
Sbjct: 452 RLKKLIDDLGD-------DKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRD 504
Query: 665 FVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 724
+ +++ K N++ T G G++ D+ VI++ +P +++ Y GR GR G+
Sbjct: 505 YSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVA 564
Query: 725 VLYYNYGD 732
+ D
Sbjct: 565 TTFLTLED 572
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 47/352 (13%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPAL--------ICPG---ITLVISPLVS 455
P Q + + MSG D + TG GK+L + LP L + G I LV++P
Sbjct: 216 PIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 275
Query: 456 LIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLR 515
L+Q + + + P + + ++++ +++ TP ++ D+L
Sbjct: 276 LVQQIHSDIRKFSKPLGIRCVPVYGGSG--VAQQISELKRGTEIVVCTPGRMI--DILCT 331
Query: 516 QLENLHVRELLSRIVIDEAHCVSQWG---------HDFRPDYQGLGILKQKFPNTPVXXX 566
+ ++ +V+DEA + G + RP+ Q + + FP V
Sbjct: 332 SSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV-LFSATFPRQ-VETL 389
Query: 567 XXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRE----NH 622
E V ++N I + RP + D+F+R
Sbjct: 390 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRP---------------ESDRFLRLLELLGE 434
Query: 623 FDECG--IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICA 680
+ E G +++ S+ C+ + + + + C HG D R + D N++ A
Sbjct: 435 WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIA 494
Query: 681 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
T G++ ++ V++ P E Y GR GR G++ V + + D
Sbjct: 495 TSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 546
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 277 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 336
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 337 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 381
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 134/352 (38%), Gaps = 47/352 (13%)
Query: 407 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPAL--------ICPG---ITLVISPLVS 455
P Q + + MSG D + TG GK+L + LP L + G I LV++P
Sbjct: 554 PIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 613
Query: 456 LIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLR 515
L+Q + + + P + + ++++ +++ TP ++ D+L
Sbjct: 614 LVQQIHSDIRKFSKPLGIRCVPVYGGSG--VAQQISELKRGTEIVVCTPGRMI--DILCT 669
Query: 516 QLENLHVRELLSRIVIDEAHCVSQWG---------HDFRPDYQGLGILKQKFPNTPVXXX 566
+ ++ +V+DEA + G + RP+ Q + + FP V
Sbjct: 670 SSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV-LFSATFPRQ-VETL 727
Query: 567 XXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRE----NH 622
E V ++N I + RP + D+F+R
Sbjct: 728 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRP---------------ESDRFLRLLELLGE 772
Query: 623 FDECG--IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICA 680
+ E G +++ S+ C+ + + + + C HG D R + D N++ A
Sbjct: 773 WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIA 832
Query: 681 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
T G++ ++ V++ P E Y GR GR G++ V + + D
Sbjct: 833 TSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD 884
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 277 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 336
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 337 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 381
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 386
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 272 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 331
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 332 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 376
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 343
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 628 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 687
+I+ +R + + +K++ H + HG+MD R + +++ ++ T G
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 688 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
I+ V VI+ LP E Y GR+GR G++ + + D
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%)
Query: 627 GIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGM 686
+I+C ++ + ++EK++ + HG+M +R + ++ + ++ T +
Sbjct: 277 AVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWAR 336
Query: 687 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYGD 732
GI+ V VI++ LP + E Y GR+GR G++ + + D
Sbjct: 337 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 382