Miyakogusa Predicted Gene

Lj4g3v2690750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2690750.1 Non Chatacterized Hit- tr|I3S4Y2|I3S4Y2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.89,0,2Fe-2S
ferredoxin-like,2Fe-2S ferredoxin-type domain; seg,NULL; no
description,Beta-grasp domain; fd,CUFF.51462.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like sup...   160   2e-40
AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664445-...   144   3e-35
AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281...   117   3e-27
AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 | chr5:3126709-...    85   2e-17
AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily...    64   3e-11
AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily...    53   5e-08

>AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like
           superfamily protein | chr1:22444565-22445011 FORWARD
           LENGTH=148
          Length = 148

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 103/148 (69%), Gaps = 9/148 (6%)

Query: 1   MATTPALSGTMVNTSFLRRQP----LKAFPNVG-QALFGLKSGC--GGRVT-MAAFKVEL 52
           MA+T ALS  +V TSF+RR P    L++ P+   Q+LFGLKSG   GGRVT MA +KV+ 
Sbjct: 1   MAST-ALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 59

Query: 53  ITPEGPFEFECPADVYILDHAEEQGIDIPYXXXXXXXXXXXXKVVGGNVDQSDGSFLDDD 112
           ITPEG  E EC  DVY+LD AEE GID+PY            KVV G+VDQSD SFLDD+
Sbjct: 60  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 119

Query: 113 QIDAGFVLTCVAYPQSDVVIETHKEEEL 140
           QI  GFVLTC AYP SDV IETHKEE++
Sbjct: 120 QIGEGFVLTCAAYPTSDVTIETHKEEDI 147


>AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 |
           chr1:3664445-3664891 FORWARD LENGTH=148
          Length = 148

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 103/148 (69%), Gaps = 9/148 (6%)

Query: 1   MATTPALSGTMVNTSFLRRQ----PLKAFPNVG-QALFGLKSGC--GGRVT-MAAFKVEL 52
           MA+T ALS  +V+TSFLRRQ     L++ P    Q+LFGLKS    GGRVT MA +KV+ 
Sbjct: 1   MAST-ALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKF 59

Query: 53  ITPEGPFEFECPADVYILDHAEEQGIDIPYXXXXXXXXXXXXKVVGGNVDQSDGSFLDDD 112
           ITPEG  E EC  DVY+LD AEE G+D+PY            KVV G++DQSD SFLDD+
Sbjct: 60  ITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 119

Query: 113 QIDAGFVLTCVAYPQSDVVIETHKEEEL 140
           Q+  G+VLTCVAYP SDVVIETHKEE +
Sbjct: 120 QMSEGYVLTCVAYPTSDVVIETHKEEAI 147


>AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 |
           chr2:11758281-11758748 REVERSE LENGTH=155
          Length = 155

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 85/152 (55%), Gaps = 15/152 (9%)

Query: 4   TPALSGTMVNTSFLRRQPL-KAFPNVGQAL-----------FGLK--SGCGGRVTMAAFK 49
           T  +S T +  + LR Q   K   N    L           FGLK  +  GG    A +K
Sbjct: 3   TVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYK 62

Query: 50  VELITPEGPF-EFECPADVYILDHAEEQGIDIPYXXXXXXXXXXXXKVVGGNVDQSDGSF 108
           V+L+ P+G   EFE   D YILD AEE G+D+PY            ++V GNVDQSDGSF
Sbjct: 63  VKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSF 122

Query: 109 LDDDQIDAGFVLTCVAYPQSDVVIETHKEEEL 140
           L+D  ++ G+VLTCVAYPQSD VI THKE EL
Sbjct: 123 LEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154


>AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 |
           chr5:3126709-3127155 FORWARD LENGTH=148
          Length = 148

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 4/112 (3%)

Query: 33  FGLKSGCG--GRV-TMAAFKVELITPEGP-FEFECPADVYILDHAEEQGIDIPYXXXXXX 88
           FGL S  G  G+V    + KV+LI+PEG   E E   D  IL+ AE  G+++PY      
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 89  XXXXXXKVVGGNVDQSDGSFLDDDQIDAGFVLTCVAYPQSDVVIETHKEEEL 140
                 K+V G VDQS GSFL+++QI  G++LTC+A P  D V+ THK+ +L
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147


>AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily
           protein | chr4:8520887-8521351 FORWARD LENGTH=154
          Length = 154

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 41  GRVTMAAFKVELITPEGPFEFECPADVYILDHAEEQGIDIPYXXXXXXXXXXXXKVVGGN 100
           GR+   A+KV +       E E   D  IL  A + G+D+PY            K+V G 
Sbjct: 46  GRIIARAYKVVVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGT 105

Query: 101 VDQSDGSFLDDDQIDAGFVLTCVAYPQSDVVIETHKEEEL 140
           VDQS G  L DD ++ G+ L C +YP SD  I+   EEEL
Sbjct: 106 VDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144


>AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily
           protein | chr1:11771969-11774117 REVERSE LENGTH=181
          Length = 181

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%)

Query: 60  EFECPADVYILDHAEEQGIDIPYXXXXXXXXXXXXKVVGGNVDQSDGSFLDDDQIDAGFV 119
           EFE P D YIL  AE Q I +P+            +V  G + Q     +  +    G+ 
Sbjct: 73  EFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQGYA 132

Query: 120 LTCVAYPQSDVVIETHKEEEL 140
           L CV +P SD+ +ET  E+E+
Sbjct: 133 LLCVGFPTSDLEVETQDEDEV 153