Miyakogusa Predicted Gene

Lj4g3v2690700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2690700.1 Non Chatacterized Hit- tr|I3SL87|I3SL87_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.4,0,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; NIF,NLI interacting factor; ubiqu,CUFF.51457.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06599.1 | Symbols:  | ubiquitin family protein | chr4:366607...   497   e-141

>AT4G06599.1 | Symbols:  | ubiquitin family protein |
           chr4:3666079-3667495 REVERSE LENGTH=340
          Length = 340

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/316 (73%), Positives = 263/316 (83%)

Query: 17  MTLKVKWAGKDYTVRVCGDDTVGELKRRICELTNVLPIRQKLLYPKLGSKXXXXXXXXXX 76
           +TL VKW GK+YTVR+C DD+V ELKRRIC LT VLP RQKLLYPK+G+K          
Sbjct: 24  LTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSLLLSS 83

Query: 77  XXXXXXXKFTMIGTTEEDLIVDPVEAPEIIDDLELPQEEAIDIKDMEVNKHKLTRRINQF 136
                  K TMIGT E+D+IVD  E+PEI+DD EL +EEA+D+KD EVNK KL RRI+Q+
Sbjct: 84  ISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQKLRRRIDQY 143

Query: 137 KVELLNPCREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLASVYSEYDIMIWSAT 196
           K+ L  PCR+GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFL + Y+EYDIMIWSAT
Sbjct: 144 KINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSAT 203

Query: 197 SMKWINLKMGQLGVLDNPNYKITALLDHLAMITVQTPSRGVFDCKPLGLIWAKFPEFYNA 256
           SMKW+ LKM +LGVL+NPNYK+TALLDHLAMITVQ+ +RG+FDCKPLGLIWA  PEFYN 
Sbjct: 204 SMKWVELKMTELGVLNNPNYKVTALLDHLAMITVQSDTRGIFDCKPLGLIWALLPEFYNP 263

Query: 257 SNTIMFDDLRRNFVMNPQNGLTIRPFRKAHANRDSDQELVKLTQYLLAIAELDDLSKLNH 316
            NTIMFDDLRRNFVMNPQNGLTI+PFRKAHANRD+DQELVKLTQYLL IAEL DLS L+H
Sbjct: 264 GNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDTDQELVKLTQYLLTIAELSDLSSLHH 323

Query: 317 HNWESFTDENAKRRRH 332
             WESF+ +N KRRR 
Sbjct: 324 SRWESFSQDNVKRRRQ 339