Miyakogusa Predicted Gene

Lj4g3v2630970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2630970.1 Non Chatacterized Hit- tr|B7ZY82|B7ZY82_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55.29,4e-19,seg,NULL;
WCOR413,Cold acclimation WCOR413,CUFF.51404.1
         (236 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated 31...   137   4e-33
AT1G29390.2 | Symbols: COR314-TM2, COR413IM2 | cold regulated 31...   137   5e-33
AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD ...   136   1e-32

>AT1G29390.1 | Symbols: COR314-TM2, COR413IM2 | cold regulated 314
           thylakoid membrane 2 | chr1:10286409-10287878 REVERSE
           LENGTH=226
          Length = 226

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 71  VKPRTSNNRSSGFRVLCYARP-FAPPNLQWIAAVSSLVLILAKGTTVPKSFIVPLFALQA 129
           V  R    R  G  V+CYA P  +  NLQWI+ +S + L+ A+GT + KSF+VPLFALQA
Sbjct: 59  VSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFALQA 118

Query: 130 PAGFIAWIKGSYGMWXXXXXXXXXXXXYIPGXXXXXXXXXXXXXXXXYEAMKFRDTKEGA 189
           P G ++W+KG YG+W              P                 Y+ M  R  +EGA
Sbjct: 119 PMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQEGA 178

Query: 190 FISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 236
            +SL I+ +LA+QHFSR  +LQK+FDQ SV+AT+A+I +T+VS + ++
Sbjct: 179 ILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226


>AT1G29390.2 | Symbols: COR314-TM2, COR413IM2 | cold regulated 314
           thylakoid membrane 2 | chr1:10286409-10287668 REVERSE
           LENGTH=183
          Length = 183

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 71  VKPRTSNNRSSGFRVLCYARP-FAPPNLQWIAAVSSLVLILAKGTTVPKSFIVPLFALQA 129
           V  R    R  G  V+CYA P  +  NLQWI+ +S + L+ A+GT + KSF+VPLFALQA
Sbjct: 16  VSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFALQA 75

Query: 130 PAGFIAWIKGSYGMWXXXXXXXXXXXXYIPGXXXXXXXXXXXXXXXXYEAMKFRDTKEGA 189
           P G ++W+KG YG+W              P                 Y+ M  R  +EGA
Sbjct: 76  PMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQEGA 135

Query: 190 FISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 236
            +SL I+ +LA+QHFSR  +LQK+FDQ SV+AT+A+I +T+VS + ++
Sbjct: 136 ILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 183


>AT1G29395.1 | Symbols: COR414-TM1, COR413IM1, COR413-TM1 | COLD
           REGULATED 314 INNER MEMBRANE 1 | chr1:10288345-10289539
           REVERSE LENGTH=225
          Length = 225

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 71  VKPRTSNNRSSGFRVLCYARPFAPPNLQWIAAVSSLVLILAKGTTVPKSFIVPLFALQAP 130
           V  R    R  G  V+CYA P +  +LQWI+ +S L L+LA+GT + KS +VPLFAL AP
Sbjct: 59  VSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAP 118

Query: 131 AGFIAWIKGSYGMWXXXXXXXXXXXXYIPGXXXXXXXXXXXXXXXXYEAMKFRDTKEGAF 190
           +  +AWIKG YG+W              PG                Y+ M  R  +EGA 
Sbjct: 119 SSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAI 178

Query: 191 ISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVS 231
           I++ I+ +LA+QHFSR  SL+K++++GSV+AT+A+I +T+VS
Sbjct: 179 IAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVS 220