Miyakogusa Predicted Gene
- Lj4g3v2629890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2629890.1 Non Chatacterized Hit- tr|I1KSK4|I1KSK4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33378
PE,71.26,0,TPR-like,NULL; HAT (Half-A-TPR) repeats,RNA-processing
protein, HAT helix; seg,NULL; SUBFAMILY NOT N,CUFF.51393.1
(1165 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46400.1 | Symbols: AT PRP39-2, PRP39-2 | Tetratricopeptide r... 565 e-161
AT1G04080.1 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-li... 412 e-114
AT1G04080.3 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-li... 385 e-106
AT1G04080.2 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-li... 298 2e-80
AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:1258... 63 1e-09
AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:1258... 63 1e-09
>AT5G46400.1 | Symbols: AT PRP39-2, PRP39-2 | Tetratricopeptide
repeat (TPR)-like superfamily protein |
chr5:18820032-18824522 FORWARD LENGTH=1036
Length = 1036
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 299/666 (44%), Positives = 413/666 (62%), Gaps = 32/666 (4%)
Query: 6 PTLSFATD--DNVELEDVVSKGSLAFDEWTILISEIDNT-YPDKVEKICLVYDHFLSKFP 62
P L +TD DN L++ S G+L FDEWT+LISEI+ T +PD +EK+CLVYD FL +FP
Sbjct: 20 PELDSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCLVYDAFLLEFP 79
Query: 63 LCYGYWRKYAAHMARLCPADKVVEVFEQAVLAATYSVGMWVDYCSFGMLAFEEPSDIRRL 122
LC+GYWRKYA H +LC + VEVFE+AV AATYSV +W+DYC+F + A+E+P D+ RL
Sbjct: 80 LCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAAYEDPHDVSRL 139
Query: 123 FKRAISFVGKDYLCHTLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKKLA 182
F+R +SF+GKDY C TLWDKYI++ QQQW SLA+VY++TLK+P+KKL YY +F+K+A
Sbjct: 140 FERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLDLYYKNFRKIA 199
Query: 183 TFLEEGMTSLDNSPKQLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSIAVKK 242
L+E + + L S+ + + D+EI +++++M S A S A+
Sbjct: 200 ASLKEKIKCRIDVNGDLSSDPMEEDLVHTRHT--DEEISIVVRELMGPSSSSAVSKALHT 257
Query: 243 YRVIGEQLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLDFIELQGDFDWA 302
Y IGEQ Y ++ +L KIS FE I R YFHV+PLD QL NWH YL F E GDFDWA
Sbjct: 258 YLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGETYGDFDWA 317
Query: 303 VKLYERCLIVCANYSDYWMRYVDFMEAKGGREIANYSLDRATEIYLKSVPAIHSFNARFK 362
+ LYERCLI CANY+++W RYVDF+E+KGGRE+AN++L RA++ ++KS IH FNARFK
Sbjct: 318 INLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALARASQTFVKSASVIHLFNARFK 377
Query: 363 EQIGDVIAARALYIQRGKGTDSDFVESVKSIANMEKRLGNMESAFNIYKXXXXXXXX-XX 421
E +GD AA + G+ FVE+V ANMEKRLGN E+A Y+
Sbjct: 378 EHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLGNFEAAVTTYREALNKTLIGKE 437
Query: 422 XXXXXPLLYIHLSRLKYMSTNSEDASRDVLIDGIRTLPPNKLLLEELIKFSMVHGGTKHI 481
LY+ SRLKY+ TNS D + +L++G +P KLLLEEL++ M+HGG++ +
Sbjct: 438 NLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKLLLEELMRLLMMHGGSRQV 497
Query: 482 TLIDTIIADALSPRSDESQGLGTEDAEDISKLYLEFVDYCGTIHDVKKAWNRHMKLFPGS 541
L+D II LS ++D S GL ED E+IS LY+EF+D GTIHDV+KA RH+KLFP S
Sbjct: 498 DLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGRHIKLFPHS 557
Query: 542 TRIDFR-------------HQSAKCQGSLN--LIQHKREEVLVALPNQASRDSSSDMHAN 586
R R + K + LN L+ +K +V P + ++SS D +
Sbjct: 558 ARAKLRGSRPSGNLFRELIQRREKTRERLNQDLLTNKGISSIVDSPPKEKKESSLDSYGT 617
Query: 587 LPQENRKVSSEYCDTQLDPTADELNHITQSNDTDMHGLQIMESD---------DKAGNNG 637
Q V ++Y +T+ + H+ + ND + + ES ++ G
Sbjct: 618 --QSKDAVRADYVNTEPNQGCLTSGHLVEGNDNVIERETLCESQSDLSMGLKANEGGKRS 675
Query: 638 RDLALP 643
+++LP
Sbjct: 676 HEVSLP 681
>AT1G04080.1 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1051803-1056550 FORWARD
LENGTH=768
Length = 768
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/544 (38%), Positives = 318/544 (58%), Gaps = 12/544 (2%)
Query: 18 LEDVVSKGSLAFDEWTILISEIDNTYPDKVEKICLVYDHFLSKFPLCYGYWRKYAAHMAR 77
L ++V SL F+ WT LI E + D + KI VYD FL++FPLCYGYW+K+A H AR
Sbjct: 89 LWNIVRANSLEFNAWTALIDETERIAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEAR 148
Query: 78 LCPADKVVEVFEQAVLAATYSVGMWVDYCSFGMLAFEEPSDIRRLFKRAISFVGKDYLCH 137
+ DKVVEV+E+AVL TYSV +W+ YC+F + + +P IRRLF+RA+ +VG D+L
Sbjct: 149 VGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAINTYGDPETIRRLFERALVYVGTDFLSS 208
Query: 138 TLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKKLATFLEEGMTSLDNSPK 197
LWDKYI++E+ QQ W +A +Y + L+ P + L +Y+ SFK+LA ++ L ++ +
Sbjct: 209 PLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKELAE--TRPLSELRSAEE 266
Query: 198 QLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSIA---------VKKYRVIGE 248
+ G+ + + E + +D S + + +KKY I E
Sbjct: 267 SAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKLESASSTEPEELKKYVGIRE 326
Query: 249 QLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLDFIELQGDFDWAVKLYER 308
+Y + E SKI +E I R YFHV+PL+ +L+NWH+YLDFIE GDF+ VKLYER
Sbjct: 327 AMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELENWHNYLDFIERDGDFNKVVKLYER 386
Query: 309 CLIVCANYSDYWMRYVDFMEAKGGREIANYSLDRATEIYLKSVPAIHSFNARFKEQIGDV 368
C++ CANY +YW+RYV MEA G ++A +L RAT++++K P IH F AR KEQ GD+
Sbjct: 387 CVVTCANYPEYWIRYVTNMEASGSADLAENALARATQVFVKKQPEIHLFAARLKEQNGDI 446
Query: 369 IAARALYIQRGKGTDSDFVESVKSIANMEKRLGNMESAFNIYKXXXXXXXXXXXXXXXPL 428
ARA Y +E+V ANME RLGN++ AF++Y+ PL
Sbjct: 447 AGARAAYQLVHSEISPGLLEAVIKHANMEYRLGNLDDAFSLYEQVIAVEKGKEHSTILPL 506
Query: 429 LYIHLSRLKYMSTNSEDASRDVLIDGIRTLPPNKLLLEELIKFSMVHGGTKHITLIDTII 488
LY SR Y+ + + +R ++++ + + P+K L+E LI F + + I ++ ++
Sbjct: 507 LYAQYSRFSYLVSRDAEKARRIIVEALDHVQPSKPLMEALIHFEAIQPPPREIDYLEPLV 566
Query: 489 ADALSPRSDESQGLGTEDAEDISKLYLEFVDYCGTIHDVKKAWNRHMKLF-PGSTRIDFR 547
+ P +D + + E++S +Y+EF+ G + +KKA ++H+KLF P + + +
Sbjct: 567 EKVIKPDADAQNIASSTEREELSLIYIEFLGIFGDVKSIKKAEDQHVKLFYPHRSTSELK 626
Query: 548 HQSA 551
+SA
Sbjct: 627 KRSA 630
>AT1G04080.3 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1051803-1056550 FORWARD
LENGTH=823
Length = 823
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/599 (34%), Positives = 319/599 (53%), Gaps = 67/599 (11%)
Query: 18 LEDVVSKGSLAFDEWTILISEIDNTYPDKVEKICLVYDHFLSKFPLCYGYWRKYAAHMAR 77
L ++V SL F+ WT LI E + D + KI VYD FL++FPLCYGYW+K+A H AR
Sbjct: 89 LWNIVRANSLEFNAWTALIDETERIAQDNIAKIRKVYDAFLAEFPLCYGYWKKFADHEAR 148
Query: 78 LCPADKVVEVFEQAVLAATYSVGMWVDYCSFGMLAFEEPSDIRRLFKRAISFVGKDYLCH 137
+ DKVVEV+E+AVL TYSV +W+ YC+F + + +P IRRLF+RA+ +VG D+L
Sbjct: 149 VGAMDKVVEVYERAVLGVTYSVDIWLHYCTFAINTYGDPETIRRLFERALVYVGTDFLSS 208
Query: 138 TLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKKLATFLEEGMTSLDNSPK 197
LWDKYI++E+ QQ W +A +Y + L+ P + L +Y+ SFK+LA ++ L ++ +
Sbjct: 209 PLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKELAE--TRPLSELRSAEE 266
Query: 198 QLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSI---------AVKKYRVIGE 248
+ G+ + + E + +D S + + +KKY I E
Sbjct: 267 SAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKLESASSTEPEELKKYVGIRE 326
Query: 249 QLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLDFIELQGDFD-----WAV 303
+Y + E SKI +E I R YFHV+PL+ +L+NWH+YLDFIE GDF+ W +
Sbjct: 327 AMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELENWHNYLDFIERDGDFNKLSSIWCI 386
Query: 304 --------------------------------------------------KLYERCLIVC 313
KLYERC++ C
Sbjct: 387 ICLIGFPLDQATFKWEITETKACASICSNVINAGVFLTFCLSGKEGPSVVKLYERCVVTC 446
Query: 314 ANYSDYWMRYVDFMEAKGGREIANYSLDRATEIYLKSVPAIHSFNARFKEQIGDVIAARA 373
ANY +YW+RYV MEA G ++A +L RAT++++K P IH F AR KEQ GD+ ARA
Sbjct: 447 ANYPEYWIRYVTNMEASGSADLAENALARATQVFVKKQPEIHLFAARLKEQNGDIAGARA 506
Query: 374 LYIQRGKGTDSDFVESVKSIANMEKRLGNMESAFNIYKXXXXXXXXXXXXXXXPLLYIHL 433
Y +E+V ANME RLGN++ AF++Y+ PLLY
Sbjct: 507 AYQLVHSEISPGLLEAVIKHANMEYRLGNLDDAFSLYEQVIAVEKGKEHSTILPLLYAQY 566
Query: 434 SRLKYMSTNSEDASRDVLIDGIRTLPPNKLLLEELIKFSMVHGGTKHITLIDTIIADALS 493
SR Y+ + + +R ++++ + + P+K L+E LI F + + I ++ ++ +
Sbjct: 567 SRFSYLVSRDAEKARRIIVEALDHVQPSKPLMEALIHFEAIQPPPREIDYLEPLVEKVIK 626
Query: 494 PRSDESQGLGTEDAEDISKLYLEFVDYCGTIHDVKKAWNRHMKLF-PGSTRIDFRHQSA 551
P +D + + E++S +Y+EF+ G + +KKA ++H+KLF P + + + +SA
Sbjct: 627 PDADAQNIASSTEREELSLIYIEFLGIFGDVKSIKKAEDQHVKLFYPHRSTSELKKRSA 685
>AT1G04080.2 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1053171-1056550 FORWARD
LENGTH=582
Length = 582
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 248/441 (56%), Gaps = 12/441 (2%)
Query: 121 RLFKRAISFVGKDYLCHTLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKK 180
RLF+RA+ +VG D+L LWDKYI++E+ QQ W +A +Y + L+ P + L +Y+ SFK+
Sbjct: 6 RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 65
Query: 181 LATFLEEGMTSLDNSPKQLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSIA- 239
LA ++ L ++ + + G+ + + E + +D S + +
Sbjct: 66 LAE--TRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKLES 123
Query: 240 --------VKKYRVIGEQLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLD 291
+KKY I E +Y + E SKI +E I R YFHV+PL+ +L+NWH+YLD
Sbjct: 124 ASSTEPEELKKYVGIREAMYIKSKEFESKIIGYEMAIRRPYFHVRPLNVAELENWHNYLD 183
Query: 292 FIELQGDFDWAVKLYERCLIVCANYSDYWMRYVDFMEAKGGREIANYSLDRATEIYLKSV 351
FIE GDF+ VKLYERC++ CANY +YW+RYV MEA G ++A +L RAT++++K
Sbjct: 184 FIERDGDFNKVVKLYERCVVTCANYPEYWIRYVTNMEASGSADLAENALARATQVFVKKQ 243
Query: 352 PAIHSFNARFKEQIGDVIAARALYIQRGKGTDSDFVESVKSIANMEKRLGNMESAFNIYK 411
P IH F AR KEQ GD+ ARA Y +E+V ANME RLGN++ AF++Y+
Sbjct: 244 PEIHLFAARLKEQNGDIAGARAAYQLVHSEISPGLLEAVIKHANMEYRLGNLDDAFSLYE 303
Query: 412 XXXXXXXXXXXXXXXPLLYIHLSRLKYMSTNSEDASRDVLIDGIRTLPPNKLLLEELIKF 471
PLLY SR Y+ + + +R ++++ + + P+K L+E LI F
Sbjct: 304 QVIAVEKGKEHSTILPLLYAQYSRFSYLVSRDAEKARRIIVEALDHVQPSKPLMEALIHF 363
Query: 472 SMVHGGTKHITLIDTIIADALSPRSDESQGLGTEDAEDISKLYLEFVDYCGTIHDVKKAW 531
+ + I ++ ++ + P +D + + E++S +Y+EF+ G + +KKA
Sbjct: 364 EAIQPPPREIDYLEPLVEKVIKPDADAQNIASSTEREELSLIYIEFLGIFGDVKSIKKAE 423
Query: 532 NRHMKLF-PGSTRIDFRHQSA 551
++H+KLF P + + + +SA
Sbjct: 424 DQHVKLFYPHRSTSELKKRSA 444
>AT4G24270.2 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 |
chr4:12581765-12587293 REVERSE LENGTH=817
Length = 817
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 161/386 (41%), Gaps = 70/386 (18%)
Query: 16 VELEDVVSKGSLAFDEWTILISEIDNTYPDKVEKICLVYDHFLSKFPLCYGYWRKYAAHM 75
V LE +S +D + I + T +EK+ + + FPL W ++A
Sbjct: 53 VTLESELSANPYNYDAYVQYIKLLRKTA--NLEKLRQAREAMSAIFPLSPSLWLEWARDE 110
Query: 76 ARLCPADKVVEV---FEQAVLAATYSVGMWVDYCSFGMLAF---------EEPSDIRRLF 123
A L ++ V E+ +E+ L+ SV +W DY SF ML F E S +R LF
Sbjct: 111 ASLAASENVPEIVMLYERG-LSDYQSVSLWCDYLSF-MLEFDPSVRGYPSEGISKMRSLF 168
Query: 124 KRAISFVGKDYL-CHTLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKKLA 182
+RAI G + +W+ Y +FE Q + LA + ++ K++ + F +
Sbjct: 169 ERAIPAAGFHVTEGNRIWEGYREFE----QGV-LATIDEADIEERNKQIQRIRSIFHRHL 223
Query: 183 TFLEEGMTSLDNSPKQLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSIAVKK 242
+ E ++S + K + E D +I D++ S V ++A KK
Sbjct: 224 SVPLENLSSTLIAYKTWELEQGIDLDI------GSDDL---------SKVSHQVAVANKK 268
Query: 243 YRVIGEQLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLDFIELQGDFDWA 302
A ++YS+ + E NI + D ++ Q + +Y+ F + GD
Sbjct: 269 -----------AQQMYSERAHLEENISKQDLS----DTEKFQEFMNYIKFEKTSGDPTRV 313
Query: 303 VKLYERCLIVCANYSDYWMRYVDFMEA--KGGREIANYSLDRATEIYLKSVPAIHSFNAR 360
+YER + SD W+ Y +++ K G+ I ++ RAT +S P
Sbjct: 314 QAIYERAVAEYPVSSDLWIDYTVYLDKTLKVGKAI-THAYSRAT----RSCP-------- 360
Query: 361 FKEQIGDVIAARALYIQRGKGTDSDF 386
GD+ A L ++RG ++ +
Sbjct: 361 ---WTGDLWARYLLALERGSASEKEI 383
>AT4G24270.1 | Symbols: EMB140 | EMBRYO DEFECTIVE 140 |
chr4:12581765-12587293 REVERSE LENGTH=816
Length = 816
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 161/386 (41%), Gaps = 70/386 (18%)
Query: 16 VELEDVVSKGSLAFDEWTILISEIDNTYPDKVEKICLVYDHFLSKFPLCYGYWRKYAAHM 75
V LE +S +D + I + T +EK+ + + FPL W ++A
Sbjct: 53 VTLESELSANPYNYDAYVQYIKLLRKTA--NLEKLRQAREAMSAIFPLSPSLWLEWARDE 110
Query: 76 ARLCPADKVVEV---FEQAVLAATYSVGMWVDYCSFGMLAF---------EEPSDIRRLF 123
A L ++ V E+ +E+ L+ SV +W DY SF ML F E S +R LF
Sbjct: 111 ASLAASENVPEIVMLYERG-LSDYQSVSLWCDYLSF-MLEFDPSVRGYPSEGISKMRSLF 168
Query: 124 KRAISFVGKDYL-CHTLWDKYIQFEFSQQQWISLAHVYIQTLKFPTKKLHQYYDSFKKLA 182
+RAI G + +W+ Y +FE Q + LA + ++ K++ + F +
Sbjct: 169 ERAIPAAGFHVTEGNRIWEGYREFE----QGV-LATIDEADIEERNKQIQRIRSIFHRHL 223
Query: 183 TFLEEGMTSLDNSPKQLQSESCFDGEIPMTMCCKDDEIYCIIKDMMDSSVGMACSIAVKK 242
+ E ++S + K + E D +I D++ S V ++A KK
Sbjct: 224 SVPLENLSSTLIAYKTWELEQGIDLDI------GSDDL---------SKVSHQVAVANKK 268
Query: 243 YRVIGEQLYHNACELYSKISSFEANIERHYFHVQPLDAKQLQNWHDYLDFIELQGDFDWA 302
A ++YS+ + E NI + D ++ Q + +Y+ F + GD
Sbjct: 269 -----------AQQMYSERAHLEENISKQDLS----DTEKFQEFMNYIKFEKTSGDPTRV 313
Query: 303 VKLYERCLIVCANYSDYWMRYVDFMEA--KGGREIANYSLDRATEIYLKSVPAIHSFNAR 360
+YER + SD W+ Y +++ K G+ I ++ RAT +S P
Sbjct: 314 QAIYERAVAEYPVSSDLWIDYTVYLDKTLKVGKAI-THAYSRAT----RSCP-------- 360
Query: 361 FKEQIGDVIAARALYIQRGKGTDSDF 386
GD+ A L ++RG ++ +
Sbjct: 361 ---WTGDLWARYLLALERGSASEKEI 383