Miyakogusa Predicted Gene

Lj4g3v2628880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2628880.1 tr|A9RJS7|A9RJS7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_203101,20,0.000001,Nucleotide-diphospho-sugar
transferases,NULL; seg,NULL; no description,NULL,CUFF.51384.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46420.1 | Symbols:  | 16S rRNA processing protein RimM famil...   109   6e-25

>AT5G46420.1 | Symbols:  | 16S rRNA processing protein RimM family |
           chr5:18829999-18832893 FORWARD LENGTH=653
          Length = 653

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 10/157 (6%)

Query: 1   MKSPWEILESPVGSGGLISLFSKHGIADDLMNMGVEYIELCC----PNERIXXXXXXXXX 56
           MKSPWEILESPVGSGG++S+ + HG  D L  +G+ Y+++      P             
Sbjct: 500 MKSPWEILESPVGSGGVLSILASHGTTDSLSTLGINYLQVHSIETKPQPSQHYINPMLVG 559

Query: 57  XXXXRTAKIGIQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDK 116
               R A+IGIQ++   ++L +N +M  SM F+K+L     K++F+A  K NS+V+ V+K
Sbjct: 560 FVSARGAEIGIQVTEE-SEL-KNLEMTFSMKFLKRL---KGKIEFEAVMKMNSHVQNVEK 614

Query: 117 DWVTVTSTTPNSYELSCSIYNSLNLCSLD-QVCMVQV 152
           +WV    + PNS+E    IY  L+ CS   ++C++ +
Sbjct: 615 EWVESVPSEPNSFEFRSDIYRVLSECSSSAKICLMNI 651