Miyakogusa Predicted Gene
- Lj4g3v2628750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2628750.1 tr|G7L803|G7L803_MEDTR Exonuclease OS=Medicago
truncatula GN=MTR_8g087940 PE=4 SV=1,69.17,0,seg,NULL; XPG_1,XPG
conserved site; XPGRADSUPER,DNA repair protein (XPGC)/yeast Rad;
Xeroderma pigme,CUFF.51368.1
(696 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein | chr... 629 e-180
AT1G29630.3 | Symbols: | 5'-3' exonuclease family protein | chr... 356 3e-98
AT1G29630.1 | Symbols: | 5'-3' exonuclease family protein | chr... 328 6e-90
AT1G18090.2 | Symbols: | 5'-3' exonuclease family protein | chr... 295 8e-80
AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein | chr... 295 8e-80
AT5G26680.2 | Symbols: | 5'-3' exonuclease family protein | chr... 79 1e-14
AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein | chr... 78 2e-14
AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family pro... 68 2e-11
AT2G02550.2 | Symbols: | PIN domain-like family protein | chr2:... 61 3e-09
AT2G02550.1 | Symbols: | PIN domain-like family protein | chr2:... 60 4e-09
AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein | chr... 58 3e-08
AT1G01880.2 | Symbols: | 5'-3' exonuclease family protein | chr... 55 2e-07
>AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:10349587-10353538 FORWARD LENGTH=735
Length = 735
Score = 629 bits (1622), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/535 (58%), Positives = 390/535 (72%), Gaps = 46/535 (8%)
Query: 1 MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCM 60
MGIQGLLP LKSIMVPIHIKEL GC VAVDTYSWLHKGALSCS ELCKG+PT RHI+YCM
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 RKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFHCYQ 120
+VNLLRH+GV+PI+VFDGG LPMK EQENKRAR+RK+N ARA+EHE++GNS+AA+ CY
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCP 180
KAVDISP IAHELIQVL+QEN+ Y+VAPYEADAQM FLAI++QVDA+ITEDSDLIPFGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RIIFKMDQFGQGVQFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAH 240
RIIFKMD+FG GV+FQ S L NK+LS GF+ QMLLEMCILSGCDYLQSLPGMGLK+AH
Sbjct: 181 RIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAH 240
Query: 241 TSIKRFKSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNVPDD 300
I +FKSYD+V+KHL+YS VSVPP YEESFK+A+LTF++QRVYDP E+I+HL ++ D+
Sbjct: 241 ALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN 300
Query: 301 IGDELDFLGPPMPKDIAQGIAKGDIDPITKIPFKGENLISPSAIAGTCQFKTSHSETAKK 360
+G++ DF+GP MP+DIA+GIA G +DP T++PF+ E++ A+ + K+ ET KK
Sbjct: 301 LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKK 360
Query: 361 KIDLPVQNNLLTKYFCFASLEAKRKFIAPRVXXXXXXXXXXXXXXXXXXXXXXXXXXAAA 420
K+DLPVQ NLLTKYFCFAS+EAKRKF APR+
Sbjct: 361 KLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPMSLTPT--------------------- 399
Query: 421 SETKNSAASIVDSENWSNDPLSNSHIENSLTTN---ISEFMESPHHVSMASEKRSPEHTK 477
+ + SI D D LS S TTN + E+P +A ++ SP+
Sbjct: 400 ----DESPSIPDDNTPDLDALS------SQTTNESPVYSLGENPCVSEVAEKRDSPDDDA 449
Query: 478 LQQSRNPIHKPCLALHKEHEHTSVQDTVEPKTREATGKVIVRSRYFQHKQVEKKV 532
++++ HK+ H + V+ + + + KVIVRS+YF+ KQ +K +
Sbjct: 450 VERN-----------HKDLHHKYCEREVD-RPKSDSLKVIVRSKYFKQKQEDKSL 492
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 569 KRKISPNDHTQNENSQPRQMHPASPPHDNGFCDDKVDGPFAERSAEEEKFGTTISHLSHY 628
KRK+ +++ EN + + M D ++ + + EKFG+ ISH+ HY
Sbjct: 612 KRKLDSDENLHKENLKSKHMRMDE-------TDTALNAETPLETDDVEKFGSNISHIGHY 664
Query: 629 SQIAEKSMDRF-EXXXXXXXXXXXXXXXXLRAPLKDVRNTCNNRPTTV--DLKQYAYVPK 685
S+IAEKS++RF LRAPLKD+RNTC ++ ++ D+ ++ Y
Sbjct: 665 SEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGLSLKPDISKFGYASS 724
Query: 686 QR 687
R
Sbjct: 725 NR 726
>AT1G29630.3 | Symbols: | 5'-3' exonuclease family protein |
chr1:10350636-10353538 FORWARD LENGTH=581
Length = 581
Score = 356 bits (913), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 188/381 (49%), Positives = 249/381 (65%), Gaps = 46/381 (12%)
Query: 155 MTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDQFGQGVQFQYSMLQNNKELSFEGFNRQ 214
M FLAI++QVDA+ITEDSDLIPFGC RIIFKMD+FG GV+FQ S L NK+LS GF+ Q
Sbjct: 1 MAFLAITKQVDAIITEDSDLIPFGCLRIIFKMDKFGHGVEFQASKLPKNKDLSLSGFSSQ 60
Query: 215 MLLEMCILSGCDYLQSLPGMGLKKAHTSIKRFKSYDKVLKHLRYSGVSVPPFYEESFKKA 274
MLLEMCILSGCDYLQSLPGMGLK+AH I +FKSYD+V+KHL+YS VSVPP YEESFK+A
Sbjct: 61 MLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRA 120
Query: 275 ILTFQYQRVYDPINENIVHLSNVPDDIGDELDFLGPPMPKDIAQGIAKGDIDPITKIPFK 334
+LTF++QRVYDP E+I+HL ++ D++G++ DF+GP MP+DIA+GIA G +DP T++PF+
Sbjct: 121 LLTFKHQRVYDPNAEDIIHLCDISDNLGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQ 180
Query: 335 GENLISPSAIAGTCQFKTSHSETAKKKIDLPVQNNLLTKYFCFASLEAKRKFIAPRVXXX 394
E++ A+ + K+ ET KKK+DLPVQ NLLTKYFCFAS+EAKRKF APR+
Sbjct: 181 AESVTPKLAVDDISRPKSFKPETVKKKLDLPVQKNLLTKYFCFASVEAKRKFKAPRISPM 240
Query: 395 XXXXXXXXXXXXXXXXXXXXXXXAAASETKNSAASIVDSENWSNDPLSNSHIENSLTTN- 453
+ + SI D D LS S TTN
Sbjct: 241 SLTPT-------------------------DESPSIPDDNTPDLDALS------SQTTNE 269
Query: 454 --ISEFMESPHHVSMASEKRSPEHTKLQQSRNPIHKPCLALHKEHEHTSVQDTVEPKTRE 511
+ E+P +A ++ SP+ ++++ HK+ H + V+ + +
Sbjct: 270 SPVYSLGENPCVSEVAEKRDSPDDDAVERN-----------HKDLHHKYCEREVD-RPKS 317
Query: 512 ATGKVIVRSRYFQHKQVEKKV 532
+ KVIVRS+YF+ KQ +K +
Sbjct: 318 DSLKVIVRSKYFKQKQEDKSL 338
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 569 KRKISPNDHTQNENSQPRQMHPASPPHDNGFCDDKVDGPFAERSAEEEKFGTTISHLSHY 628
KRK+ +++ EN + + M D ++ + + EKFG+ ISH+ HY
Sbjct: 458 KRKLDSDENLHKENLKSKHMRMDE-------TDTALNAETPLETDDVEKFGSNISHIGHY 510
Query: 629 SQIAEKSMDRF-EXXXXXXXXXXXXXXXXLRAPLKDVRNTCNNRPTTV--DLKQYAYVPK 685
S+IAEKS++RF LRAPLKD+RNTC ++ ++ D+ ++ Y
Sbjct: 511 SEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGLSLKPDISKFGYASS 570
Query: 686 QR 687
R
Sbjct: 571 NR 572
>AT1G29630.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:10349587-10353538 FORWARD LENGTH=665
Length = 665
Score = 328 bits (842), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 148/183 (80%), Positives = 168/183 (91%)
Query: 1 MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCM 60
MGIQGLLP LKSIMVPIHIKEL GC VAVDTYSWLHKGALSCS ELCKG+PT RHI+YCM
Sbjct: 1 MGIQGLLPLLKSIMVPIHIKELEGCIVAVDTYSWLHKGALSCSRELCKGLPTKRHIQYCM 60
Query: 61 RKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFHCYQ 120
+VNLLRH+GV+PI+VFDGG LPMK EQENKRAR+RK+N ARA+EHE++GNS+AA+ CY
Sbjct: 61 HRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANGNSSAAYECYS 120
Query: 121 KAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCP 180
KAVDISP IAHELIQVL+QEN+ Y+VAPYEADAQM FLAI++QVDA+ITEDSDLIPFGC
Sbjct: 121 KAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCL 180
Query: 181 RII 183
R+I
Sbjct: 181 RVI 183
Score = 196 bits (497), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 166/285 (58%), Gaps = 46/285 (16%)
Query: 251 KVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNVPDDIGDELDFLGP 310
+V+KHL+YS VSVPP YEESFK+A+LTF++QRVYDP E+I+HL ++ D++G++ DF+GP
Sbjct: 181 RVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDNLGEDSDFVGP 240
Query: 311 PMPKDIAQGIAKGDIDPITKIPFKGENLISPSAIAGTCQFKTSHSETAKKKIDLPVQNNL 370
MP+DIA+GIA G +DP T++PF+ E++ A+ + K+ ET KKK+DLPVQ NL
Sbjct: 241 SMPQDIAKGIALGQLDPFTQLPFQAESVTPKLAVDDISRPKSFKPETVKKKLDLPVQKNL 300
Query: 371 LTKYFCFASLEAKRKFIAPRVXXXXXXXXXXXXXXXXXXXXXXXXXXAAASETKNSAASI 430
LTKYFCFAS+EAKRKF APR+ + + SI
Sbjct: 301 LTKYFCFASVEAKRKFKAPRISPMSLTPT-------------------------DESPSI 335
Query: 431 VDSENWSNDPLSNSHIENSLTTN---ISEFMESPHHVSMASEKRSPEHTKLQQSRNPIHK 487
D D LS S TTN + E+P +A ++ SP+ ++++
Sbjct: 336 PDDNTPDLDALS------SQTTNESPVYSLGENPCVSEVAEKRDSPDDDAVERN------ 383
Query: 488 PCLALHKEHEHTSVQDTVEPKTREATGKVIVRSRYFQHKQVEKKV 532
HK+ H + V+ + + + KVIVRS+YF+ KQ +K +
Sbjct: 384 -----HKDLHHKYCEREVD-RPKSDSLKVIVRSKYFKQKQEDKSL 422
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 569 KRKISPNDHTQNENSQPRQMHPASPPHDNGFCDDKVDGPFAERSAEEEKFGTTISHLSHY 628
KRK+ +++ EN + + M D ++ + + EKFG+ ISH+ HY
Sbjct: 542 KRKLDSDENLHKENLKSKHMRMDE-------TDTALNAETPLETDDVEKFGSNISHIGHY 594
Query: 629 SQIAEKSMDRF-EXXXXXXXXXXXXXXXXLRAPLKDVRNTCNNRPTTV--DLKQYAYVPK 685
S+IAEKS++RF LRAPLKD+RNTC ++ ++ D+ ++ Y
Sbjct: 595 SEIAEKSVERFVSAISSFKYSGTGSRASGLRAPLKDIRNTCPSKGLSLKPDISKFGYASS 654
Query: 686 QR 687
R
Sbjct: 655 NR 656
>AT1G18090.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:6224539-6227715 FORWARD LENGTH=577
Length = 577
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 227/350 (64%), Gaps = 20/350 (5%)
Query: 1 MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELC---KGIPTTRHIE 57
MGI+ LL +K ++PIHI++ G V +D YSWLHKGA SCS ELC G R+I+
Sbjct: 1 MGIKDLLRFMKPYILPIHIQKYAGKRVGIDAYSWLHKGAYSCSMELCLDTDGKKKLRYID 60
Query: 58 YCMRKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFH 117
Y M +VNLL+HY + P++V DGG +P K+ ++R R RK NF A+ +GN AA
Sbjct: 61 YFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRQRKANFDAAMVKLKEGNVAAATE 120
Query: 118 CYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISR----QVDAVITEDSD 173
+Q+AV ++ +AH+LIQVLK EN+++IVAPYEADAQ+ +L+ + AVITEDSD
Sbjct: 121 LFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSD 180
Query: 174 LIPFGCPRIIFKMDQFGQGVQFQYSMLQN-----NKELSFEGFNRQMLLEMCILSGCDYL 228
L+ +GC +IFKMD++G+G + +L N +++ SF+ F++++ MC+L+GCD+L
Sbjct: 181 LLAYGCKAVIFKMDRYGKGEEL---VLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFL 237
Query: 229 QSLPGMGLKKAHTSIKRFKSYDKVLKHLRY-SGVSVPPFYEESFKKAILTFQYQRVYDPI 287
S+PG+G+ +AH I +++S + VL L+ G VP Y SF +A+ FQ+ RVYD
Sbjct: 238 PSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARVYDFD 297
Query: 288 NENIVHLSNVPDDI----GDELDFLGPPMPKDIAQGIAKGDIDPITKIPF 333
+ + HL + ++ ++L+FLGP + +A IA+G++DPIT F
Sbjct: 298 AKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVDPITMKAF 347
>AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:6224539-6227715 FORWARD LENGTH=577
Length = 577
Score = 295 bits (755), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 227/350 (64%), Gaps = 20/350 (5%)
Query: 1 MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELC---KGIPTTRHIE 57
MGI+ LL +K ++PIHI++ G V +D YSWLHKGA SCS ELC G R+I+
Sbjct: 1 MGIKDLLRFMKPYILPIHIQKYAGKRVGIDAYSWLHKGAYSCSMELCLDTDGKKKLRYID 60
Query: 58 YCMRKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFH 117
Y M +VNLL+HY + P++V DGG +P K+ ++R R RK NF A+ +GN AA
Sbjct: 61 YFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEGNVAAATE 120
Query: 118 CYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISR----QVDAVITEDSD 173
+Q+AV ++ +AH+LIQVLK EN+++IVAPYEADAQ+ +L+ + AVITEDSD
Sbjct: 121 LFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSD 180
Query: 174 LIPFGCPRIIFKMDQFGQGVQFQYSMLQN-----NKELSFEGFNRQMLLEMCILSGCDYL 228
L+ +GC +IFKMD++G+G + +L N +++ SF+ F++++ MC+L+GCD+L
Sbjct: 181 LLAYGCKAVIFKMDRYGKGEEL---VLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFL 237
Query: 229 QSLPGMGLKKAHTSIKRFKSYDKVLKHLRY-SGVSVPPFYEESFKKAILTFQYQRVYDPI 287
S+PG+G+ +AH I +++S + VL L+ G VP Y SF +A+ FQ+ RVYD
Sbjct: 238 PSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVFQHARVYDFD 297
Query: 288 NENIVHLSNVPDDI----GDELDFLGPPMPKDIAQGIAKGDIDPITKIPF 333
+ + HL + ++ ++L+FLGP + +A IA+G++DPIT F
Sbjct: 298 AKKLKHLKPLSHNLLNLPVEQLEFLGPDLSPSVAVAIAEGNVDPITMKAF 347
>AT5G26680.2 | Symbols: | 5'-3' exonuclease family protein |
chr5:9311882-9315458 REVERSE LENGTH=383
Length = 383
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 18/277 (6%)
Query: 1 MGIQGLLPQLK----SIMVPIHIKELNGCSVAVDTYSWLHKGAL---SCSTELC--KGIP 51
MGI+GL L S M + G +AVD +++ + TE+ +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 52 TTRHIEYCMRKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGN 111
T H++ + L G++P+ VFDG +K ++ KR R D A GN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 112 STAAFHCYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITED 171
++ V ++ + ++L+ + + A EA+AQ L S +V V +ED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 172 SDLIPFGCPRII-FKMDQFGQGV---QFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDY 227
D + FG P+ + MD + + +F+ + + +L+ + F +++CILSGCDY
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQF-----IDLCILSGCDY 235
Query: 228 LQSLPGMGLKKAHTSIKRFKSYDKVLKHLRYSGVSVP 264
S+ G+G + A I++ S + +L++L +P
Sbjct: 236 CDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIP 272
>AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein |
chr5:9311882-9315458 REVERSE LENGTH=453
Length = 453
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 18/277 (6%)
Query: 1 MGIQGLLPQLK----SIMVPIHIKELNGCSVAVDTYSWLHKGAL---SCSTELC--KGIP 51
MGI+GL L S M + G +AVD +++ + TE+ +
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60
Query: 52 TTRHIEYCMRKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGN 111
T H++ + L G++P+ VFDG +K ++ KR R D A GN
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120
Query: 112 STAAFHCYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITED 171
++ V ++ + ++L+ + + A EA+AQ L S +V V +ED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180
Query: 172 SDLIPFGCPRII-FKMDQFGQGV---QFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDY 227
D + FG P+ + MD + + +F+ + + +L+ + F +++CILSGCDY
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQF-----IDLCILSGCDY 235
Query: 228 LQSLPGMGLKKAHTSIKRFKSYDKVLKHLRYSGVSVP 264
S+ G+G + A I++ S + +L++L +P
Sbjct: 236 CDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIP 272
>AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family protein
| chr3:10424321-10431178 FORWARD LENGTH=1479
Length = 1479
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 131 HELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDQFG 190
EL+Q+ + YI+AP EA+AQ F+ S VD ++T+DSD+ FG R ++K
Sbjct: 930 QELLQIF---GIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGA-RSVYKNIFDD 985
Query: 191 QGVQFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHTSIKRFKSYD 250
+ Y M KEL G +R ++ M +L G DY + + G+G+ A + F D
Sbjct: 986 RKYVETYFMKDIEKEL---GLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEED 1042
Query: 251 KVLKHLRY 258
+ K +
Sbjct: 1043 GLQKFREW 1050
>AT2G02550.2 | Symbols: | PIN domain-like family protein |
chr2:687384-688764 FORWARD LENGTH=200
Length = 200
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 13 IMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCK--GIPTTRHIEYCMRKVNLLRHYG 70
++ I LN ++A+D WL++GAL+ + + + P + HI + ++KV
Sbjct: 15 VLKSISFSALNSKTLAIDASMWLYRGALNNARKFLEEPTTPNSEHIMFVIKKVKQFIDRN 74
Query: 71 VEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTA---------------- 114
V PILVFDG LP+KS + N + +E+ D +++A
Sbjct: 75 VNPILVFDGHRLPIKSPR----------NPIKTLEYAKDLDASAQLMAPDDPKRKDKEKN 124
Query: 115 AFHCYQKAVDISPLIAHELIQVLKQ---ENLQYIVAP 148
A +Q + I+P + H I+ + E LQ++ P
Sbjct: 125 ATKIFQSHIHITPYVIHVFIEYVYNQVIEELQHLNVP 161
>AT2G02550.1 | Symbols: | PIN domain-like family protein |
chr2:687384-687909 FORWARD LENGTH=146
Length = 146
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 13 IMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCK--GIPTTRHIEYCMRKVNLLRHYG 70
++ I LN ++A+D WL++GAL+ + + + P + HI + ++KV
Sbjct: 15 VLKSISFSALNSKTLAIDASMWLYRGALNNARKFLEEPTTPNSEHIMFVIKKVKQFIDRN 74
Query: 71 VEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTA---------------- 114
V PILVFDG LP+KS + N + +E+ D +++A
Sbjct: 75 VNPILVFDGHRLPIKSPR----------NPIKTLEYAKDLDASAQLMAPDDPKRKDKEKN 124
Query: 115 AFHCYQKAVDISPLIAHELIQV 136
A +Q + I+P + H I+V
Sbjct: 125 ATKIFQSHIHITPYVIHVFIEV 146
>AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:306558-308991 REVERSE LENGTH=599
Length = 599
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 32/248 (12%)
Query: 27 VAVDTYSWL--HKGALSCSTELCKGIPTTRHIEYCM-RKVNLLRHYGVEPILVFDGGLLP 83
VAVD W+ H+ A+ KG H+ R +NL +G P+ V DG P
Sbjct: 28 VAVDLSFWIVQHETAV-------KGFVLKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSP 80
Query: 84 MKSEQENKRARARKDNFARAIEHESDGNSTAAFHCYQKAVDIS-----PLIAHELIQVLK 138
+KS+ AR F R S G T + V + E +++L+
Sbjct: 81 LKSQ-------ARISRFFR-----SSGIDTCNLPVIKDGVSVERNKLFSEWVRECVELLE 128
Query: 139 QENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDQFGQGVQFQYS 198
+ + A EA+A L VDA IT DSD FG +I + + Y
Sbjct: 129 LLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNSREPFECYH 188
Query: 199 MLQNNKELSFEGFNRQMLLEMCILSGCDY-LQSLPGMGLKKAHTSIKRFKSYDKVLKHLR 257
M L G R+ L+ + +L G DY + G+G+ KA ++ F S D+VL+ L+
Sbjct: 189 MSHIESGL---GLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF-SEDQVLERLQ 244
Query: 258 YSGVSVPP 265
G + P
Sbjct: 245 DIGNGLQP 252
>AT1G01880.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:306558-308991 REVERSE LENGTH=598
Length = 598
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 27 VAVDTYSWL--HKGALSCSTELCKGIPTTRHIEYCM-RKVNLLRHYGVEPILVFDGGLLP 83
VAVD W+ H+ A+ KG H+ R +NL +G P+ V DG P
Sbjct: 28 VAVDLSFWIVQHETAV-------KGFVLKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSP 80
Query: 84 MKSEQENKRARARKDNFARAIEHES-------DGNSTAAFHCYQKAVDISPLIAHELIQV 136
+KS+ AR F R+ ++ DG S + + V L+ I V
Sbjct: 81 LKSQ-------ARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVRECELLELLGIPV 133
Query: 137 LKQENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDQFGQGVQFQ 196
LK A EA+A L VDA IT DSD FG +I + +
Sbjct: 134 LK--------ANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNSREPFEC 185
Query: 197 YSMLQNNKELSFEGFNRQMLLEMCILSGCDY-LQSLPGMGLKKAHTSIKRFKSYDKVLKH 255
Y M L G R+ L+ + +L G DY + G+G+ KA ++ F S D+VL+
Sbjct: 186 YHMSHIESGL---GLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF-SEDQVLER 241
Query: 256 LRYSGVSVPP 265
L+ G + P
Sbjct: 242 LQDIGNGLQP 251