Miyakogusa Predicted Gene

Lj4g3v2628740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2628740.1 tr|B9H2B9|B9H2B9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_858427 PE=4 SV=1,52.48,2e-17,
,CUFF.51364.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synt...    74   3e-14
AT4G27550.1 | Symbols: ATTPS4, TPS4 | trehalose-6-phosphatase sy...    54   2e-08
AT1G17000.1 | Symbols: ATTPS3, TPS3 | trehalose-phosphatase/synt...    50   4e-07

>AT1G78580.1 | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate
           synthase | chr1:29552495-29557482 REVERSE LENGTH=942
          Length = 942

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 53/80 (66%), Gaps = 5/80 (6%)

Query: 29  QRSLSNIEKREIDRASGDPGRPTSRDRISLNEGSSVLDLKGDNYFSCAVSRKRSTARYLL 88
           QRSL +  K   + + G+  RP S ++IS N    VLDLKG+NYFSCAV R R+ ARYLL
Sbjct: 868 QRSLQSERKSGSNHSLGNSRRP-SPEKISWN----VLDLKGENYFSCAVGRTRTNARYLL 922

Query: 89  KTSDDVVNLLSDLADHSSSP 108
            + DDVV  L  LAD +SSP
Sbjct: 923 GSPDDVVCFLEKLADTTSSP 942


>AT4G27550.1 | Symbols: ATTPS4, TPS4 | trehalose-6-phosphatase
           synthase S4 | chr4:13755689-13759740 FORWARD LENGTH=795
          Length = 795

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 34/46 (73%)

Query: 62  SSVLDLKGDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLADHSSS 107
           S+++DLKG+NYFS A+ +  + ARY L +SDDVV L+  L  H+++
Sbjct: 750 STIVDLKGENYFSVAIGQTHTKARYFLDSSDDVVKLIGKLCTHNNA 795


>AT1G17000.1 | Symbols: ATTPS3, TPS3 |
           trehalose-phosphatase/synthase 3 | chr1:5812728-5816662
           FORWARD LENGTH=783
          Length = 783

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 40/56 (71%), Gaps = 4/56 (7%)

Query: 55  RISLNEGSSVLDLKGDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLADHSSSPST 110
           ++SLN    VLDLK +NYFS A+ + R+ ARY++ +S +VVNLL  LA  +++ ++
Sbjct: 726 KVSLN----VLDLKQENYFSTAIGQARTKARYVVDSSHNVVNLLHKLAVANTTTTS 777