Miyakogusa Predicted Gene

Lj4g3v2618650.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2618650.1 Non Chatacterized Hit- tr|C0P3H6|C0P3H6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,40.32,3e-19,no
description,NULL; CPDase,2',3'-cyclic-nucleotide 3'-phosphodiesterase;
LigT-like,RNA ligase/cycli,CUFF.51380.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18930.1 | Symbols:  | RNA ligase/cyclic nucleotide phosphodi...   229   7e-61
AT4G18940.1 | Symbols:  | RNA ligase/cyclic nucleotide phosphodi...   169   1e-42

>AT4G18930.1 | Symbols:  | RNA ligase/cyclic nucleotide
           phosphodiesterase family protein |
           chr4:10370797-10371885 FORWARD LENGTH=181
          Length = 181

 Score =  229 bits (584), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 132/180 (73%)

Query: 6   IETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAITLTADDALNKL 65
           +E  KK+VYSVWA+P +   PR  KLM  LRSEF GP F PH+TV  +  LTAD+A    
Sbjct: 1   MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60

Query: 66  RSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSSTPYMPHL 125
            SAC+ LKA+  TVDRV+ GTFF+QCV+LLL  +P V+E   HC NHF   ++TPYMPHL
Sbjct: 61  ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHL 120

Query: 126 SLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTEDKTLKSWEKIAECTLS 185
           SLLY +LT+EEK+ AQE+A  LD SL GLSF + RLAL KTDTEDKTL++WE +A C L+
Sbjct: 121 SLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLN 180


>AT4G18940.1 | Symbols:  | RNA ligase/cyclic nucleotide
           phosphodiesterase family protein |
           chr4:10372732-10373581 FORWARD LENGTH=196
          Length = 196

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 122/182 (67%), Gaps = 5/182 (2%)

Query: 7   ETQKKEVYSVWAIPPDHVRPRIAKLMTDLRSEFGGPHFEPHITVVGAI--TLTADDALNK 64
           + ++K +Y++WA+P D V  R+ +LM  LRSEFGGP F+PH+T+VG     LTA +A   
Sbjct: 18  DEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLTLVGPFPYKLTASEAKRM 77

Query: 65  LRSACEELKAFQVTVDRVAAGTFFYQCVYLLLHPSPPVVETSAHCSNHFGYKSSTPYMPH 124
            +SACE  K +  TVD+V+AGT ++QC+Y+ L  +  V+  + H   HF   +   Y+PH
Sbjct: 78  FKSACEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAGHFMAHFKPFTGKFYVPH 137

Query: 125 LSLLYGDLTDEEKQKAQERAKVLDYSLSGLSFEITRLALYKTDTEDKTLKSWEKIAECTL 184
           +S+LYGDLT+ EK+KA E+A  LD SL GL+F+I R+AL+ TD +   + SW K+ E TL
Sbjct: 138 MSILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITDAD---VGSWVKVDEHTL 194

Query: 185 SS 186
            S
Sbjct: 195 IS 196