Miyakogusa Predicted Gene

Lj4g3v2606070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2606070.1 Non Chatacterized Hit- tr|H9VQK8|H9VQK8_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,59.42,2e-16,seg,NULL; DUF177,Protein of unknown function
DUF177,CUFF.51316.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19810.1 | Symbols:  | Protein of unknown function (DUF177) |...   273   9e-74

>AT3G19810.1 | Symbols:  | Protein of unknown function (DUF177) |
           chr3:6877756-6878812 REVERSE LENGTH=321
          Length = 321

 Score =  273 bits (699), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 135/237 (56%), Positives = 162/237 (68%), Gaps = 3/237 (1%)

Query: 74  SGVISLDWDDDGEIEDAGSPWEGAVIYKRNASILHLEYCTTLERLGLGNLSTDVSKSRAA 133
           +  I +DW+D  EIED GSPWEG+V+Y+RNAS+ H+EYCTTLERLGLG LSTDVSK RA+
Sbjct: 78  TSTIDMDWEDQEEIEDTGSPWEGSVMYRRNASVTHVEYCTTLERLGLGRLSTDVSKKRAS 137

Query: 134 VMGLRVTKAVKDYPNGTPVQISIDVARKKKKLRLDGIIKTVIGLLCNRCCMPSAXXXXXX 193
            MGLRVTK VKDYP+GTPVQ+S+DV RKKKKLRLDGI++TVI L CNRC   +       
Sbjct: 138 AMGLRVTKDVKDYPDGTPVQVSVDVIRKKKKLRLDGIVRTVITLGCNRCGESTGESIFSN 197

Query: 194 XXXXXXXXPIVEPETIDLGVIFGEDKITTSGXXXXXXXXXXXXXXXXXYFPPEEKHIDIS 253
                   P+ EP+ IDLG  FG       G                 +FPPE K IDIS
Sbjct: 198 FSLLLTEEPVEEPDVIDLGFTFG--NDKEEGEDDDDNDDSWIDWEDKLHFPPEVKEIDIS 255

Query: 254 KNIRDRVHLEITMNSVCDPGCKGMCLKCGQNFNTGNCNCS-QVKEKSYGPLGNLKEK 309
           K+IRD VHLEIT+ ++CD  CKGMCLKCG N N   C+C  + K+K YGPLGNL+E+
Sbjct: 256 KHIRDLVHLEITITAICDSACKGMCLKCGANLNKRKCDCGREEKDKGYGPLGNLREQ 312