Miyakogusa Predicted Gene

Lj4g3v2604490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2604490.1 tr|F2CR04|F2CR04_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,36.28,2e-18,seg,NULL; no description,Thioredoxin-like fold;
Thioredoxin-like,Thioredoxin-like fold,CUFF.51283.1
         (367 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   296   2e-80
AT2G31840.1 | Symbols:  | Thioredoxin superfamily protein | chr2...   120   1e-27

>AT4G28590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 21 plant structures;
           EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
           thaliana protein match is: Thioredoxin superfamily
           protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112
           proteins in 39 species: Archae - 2; Bacteria - 0;
           Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other
           Eukaryotes - 22 (source: NCBI BLink). |
           chr4:14125367-14126828 REVERSE LENGTH=331
          Length = 331

 Score =  296 bits (757), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 132/163 (80%), Positives = 148/163 (90%)

Query: 197 WPVDADVGWGIRASEYFEKHPIKNVVGEDGVEIDWEGELDDCWVQEINCLEWESIAFHPS 256
           WPVD DVGWGI+ASEYF+ HPIKNVVG+DG EIDWEGE+DD WV+EINCLEWES AFHPS
Sbjct: 161 WPVDTDVGWGIKASEYFDTHPIKNVVGDDGSEIDWEGEIDDSWVKEINCLEWESFAFHPS 220

Query: 257 PLIVLVFERYNRATDNWKNLKELEKAIKVYWSAKDRLPPRAVKIDINIEKDLAYALKVRE 316
           PL+VLVFERY RA+DNWK LKELEKAIKVYW AKDRLPPRAVKID+NIE DLAYALK +E
Sbjct: 221 PLVVLVFERYKRASDNWKTLKELEKAIKVYWDAKDRLPPRAVKIDLNIETDLAYALKAKE 280

Query: 317 CPQILFLRGNKVVYREKELRTADELVQMIAFFYYSAKKPAWID 359
           CPQILFLRGN+++YREK+ RTADELV MIA FYY AK+P+ +D
Sbjct: 281 CPQILFLRGNRILYREKDFRTADELVHMIAHFYYKAKRPSCVD 323



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 48  VKCSVSTKSHSNPEPEPKQRAGTKGRGRRSQQPTEDVVSNNDGDKGSAEVFPTTIPRKPR 107
           VK   +  S S  +PE K +  ++ + + +  P  +  +N        E FPT +PRK +
Sbjct: 44  VKRFAAVSSDSVLDPESKNQTRSRRKNKEAVTPIAETENN--------EKFPTKVPRKSK 95

Query: 108 RGRKSEAMKVEDFVRDTLDRTFAAIREQNADALEGHE 144
           RGR+SEA  VED+VR +L+RTF+ I+EQN +  E  E
Sbjct: 96  RGRRSEADAVEDYVRSSLERTFSTIKEQNPEVFENKE 132


>AT2G31840.1 | Symbols:  | Thioredoxin superfamily protein |
           chr2:13538003-13539602 REVERSE LENGTH=350
          Length = 350

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 23/180 (12%)

Query: 197 WPVDADVGWGIRASEYFEKHPIKNVVGEDGV------------EIDWEGELDDCWVQEIN 244
           WP DAD GWG   +++F K  IKN   E+              EI W+   DD +++ I 
Sbjct: 160 WPEDAD-GWGFSFNQFFNKITIKNEKKEEEDDDEDSEGDDSEKEIVWQ---DDNYIRPIK 215

Query: 245 CL---EWESIAFHP-SPLIVLVFERYNRATDNWKNLKELEKAIKVYWSAKDRLP-PRAVK 299
            L   EWE   F   SPL+VLV  RY R  +N K  +ELEKAI+V W+    LP PR V 
Sbjct: 216 DLTTAEWEEAVFKDISPLMVLVHNRYKRPKENEKFREELEKAIQVIWNCG--LPSPRCVA 273

Query: 300 IDINIEKDLAYALKVRECPQILFLRGNKVVYREKELRTADELVQMIAFFYYSAKKPAWID 359
           +D  +E DL  ALKV   P+I+F +  K++YREK +RTADEL +++AFFYY A KP  ++
Sbjct: 274 VDAVVETDLVSALKVSVFPEIIFTKAGKILYREKGIRTADELSKIMAFFYYGAAKPPCLN 333