Miyakogusa Predicted Gene

Lj4g3v2604250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2604250.1 Non Chatacterized Hit- tr|C6TJQ3|C6TJQ3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40581 PE,88.48,0,pth:
peptidyl-tRNA hydrolase,Peptidyl-tRNA hydrolase;
Pept_tRNA_hydro_bact,Peptidyl-tRNA hydrolase; ,CUFF.51265.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19830.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   336   8e-93
AT1G18440.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   242   1e-64
AT5G38290.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   240   6e-64
AT5G38290.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   239   8e-64
AT5G16140.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   238   2e-63
AT5G16140.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein...   238   2e-63

>AT5G19830.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:6703383-6705125 FORWARD LENGTH=219
          Length = 219

 Score =  336 bits (861), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 187/216 (86%), Gaps = 1/216 (0%)

Query: 1   MLNRLSKRCFSTLAP-RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSK 59
           ML+RLS+RC+ T +  RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GIQMN ++ K
Sbjct: 1   MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60

Query: 60  AIFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLY 119
           AI G+GFV ++PV LAKPQTYMNLSGES+GPLAAYYK PLN+VLV HDD+ LPCGVLRL 
Sbjct: 61  AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120

Query: 120 DKGGHGCHKGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEAL 179
           +KGGHGCH GLKSV+ HFRGNREF RLRIGIGKPPGQMDPKAFLLQKF++ AR+R+D+AL
Sbjct: 121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKAL 180

Query: 180 QEGVDALKILLSRGLEVSAKRFNKEQKYKHLRVQTL 215
            EGVDALK++L++    S + FN EQKYKHL+  T+
Sbjct: 181 AEGVDALKLVLAKDFGESWRLFNVEQKYKHLKQHTI 216


>AT1G18440.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr1:6345994-6347686 FORWARD LENGTH=288
          Length = 288

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GI MN ++ KA+FGKG +G +P+ LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQT+MNLSGES G + ++YK PL QVLV +DDL+LP G LRL  KGGHG H G++S+I  
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
            +G+R+FPRLRIGIG+PPG+MD   F+L++FN   ++ +D   Q G++A++ILL  G   
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query: 197 SAKRFNKEQKYKHL 210
           SA   N  +  + L
Sbjct: 274 SATFVNTRKSMEQL 287


>AT5G38290.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:15303491-15305381 FORWARD LENGTH=250
          Length = 250

 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 138/196 (70%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG KY GTRHN+GFEMID  A +  I MN + SKA+ G G VGEVP+ L K
Sbjct: 55  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 114

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQ YMN SGES GPLAAYY+ PL  +L+ +DD+ L  GVLRL  KGGH  H GLK+V  H
Sbjct: 115 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 174

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
             G R +PRL IGIG PPG MD KAFLLQKF+   R+++DE L++GV+ +K L+  G   
Sbjct: 175 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 234

Query: 197 SAKRFNKEQKYKHLRV 212
           S  RFN  QKYK  +V
Sbjct: 235 SISRFNLGQKYKFHKV 250


>AT5G38290.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:15303603-15305381 FORWARD LENGTH=246
          Length = 246

 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 138/196 (70%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG KY GTRHN+GFEMID  A +  I MN + SKA+ G G VGEVP+ L K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQ YMN SGES GPLAAYY+ PL  +L+ +DD+ L  GVLRL  KGGH  H GLK+V  H
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 170

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
             G R +PRL IGIG PPG MD KAFLLQKF+   R+++DE L++GV+ +K L+  G   
Sbjct: 171 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 230

Query: 197 SAKRFNKEQKYKHLRV 212
           S  RFN  QKYK  +V
Sbjct: 231 SISRFNLGQKYKFHKV 246


>AT5G16140.2 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:5270308-5271517 REVERSE LENGTH=240
          Length = 240

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 143/196 (72%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MN + SKA+ G G + +VP+ LAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQTYMN SGES G LA++Y+ PL  +L+ +D++ LP GVLRL  KGG G H G+KSV+ H
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
             G R FPRL IGIGKPPG MD KAFLLQKF+   +++I+EAL++G +A+K L+  G   
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query: 197 SAKRFNKEQKYKHLRV 212
              RFN  QKYK  +V
Sbjct: 225 GISRFNLVQKYKFHKV 240


>AT5G16140.1 | Symbols:  | Peptidyl-tRNA hydrolase family protein |
           chr5:5270308-5271517 REVERSE LENGTH=240
          Length = 240

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 143/196 (72%)

Query: 17  PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIQMNELHSKAIFGKGFVGEVPVFLAK 76
           PWL VGLGNPG+KY GTRHNVGFEMID  A  +G+ MN + SKA+ G G + +VP+ LAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 77  PQTYMNLSGESTGPLAAYYKFPLNQVLVFHDDLNLPCGVLRLYDKGGHGCHKGLKSVIYH 136
           PQTYMN SGES G LA++Y+ PL  +L+ +D++ LP GVLRL  KGG G H G+KSV+ H
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164

Query: 137 FRGNREFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKILLSRGLEV 196
             G R FPRL IGIGKPPG MD KAFLLQKF+   +++I+EAL++G +A+K L+  G   
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224

Query: 197 SAKRFNKEQKYKHLRV 212
              RFN  QKYK  +V
Sbjct: 225 GISRFNLVQKYKFHKV 240