Miyakogusa Predicted Gene

Lj4g3v2603860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603860.1 Non Chatacterized Hit- tr|H3JFB7|H3JFB7_STRPU
Uncharacterized protein OS=Strongylocentrotus
purpurat,34.04,0.00000000000002,Med10,Mediator complex, subunit Med10;
seg,NULL; NUT2,NULL; NUT2 AND UXT,NULL,CUFF.51220.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26665.1 | Symbols:  | Mediator complex, subunit Med10 | chr1...   203   6e-53
AT1G26665.2 | Symbols:  | Mediator complex, subunit Med10 | chr1...   203   7e-53
AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10 ...   185   2e-47

>AT1G26665.1 | Symbols:  | Mediator complex, subunit Med10 |
           chr1:9214510-9215426 FORWARD LENGTH=189
          Length = 189

 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 119/155 (76%)

Query: 39  ESIQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCN 98
           +S + L Q+  SI++TLG++HQL+LTV+++  A Q+ LLQR+N LV ELD M KL+EKCN
Sbjct: 34  DSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCN 93

Query: 99  VQVPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDE 158
           +Q+PMEV+NLIDDGKNPDEFTKDV+N+CIA+NQ+TKGKTDA KD RKH+ EELEQNFPDE
Sbjct: 94  IQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDE 153

Query: 159 VETFRESXXXXXXXXXXXXXXXSALPNGDVRVKAE 193
           V+ +RE                S LPNGD +VK E
Sbjct: 154 VDMYREIRASSAAEAKRLAQSQSVLPNGDAKVKNE 188


>AT1G26665.2 | Symbols:  | Mediator complex, subunit Med10 |
           chr1:9214510-9215426 FORWARD LENGTH=189
          Length = 189

 Score =  203 bits (516), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 119/155 (76%)

Query: 39  ESIQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCN 98
           +S + L Q+  SI++TLG++HQL+LTV+++  A Q+ LLQR+N LV ELD M KL+EKCN
Sbjct: 34  DSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCN 93

Query: 99  VQVPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDE 158
           +Q+PMEV+NLIDDGKNPDEFTKDV+N+CIA+NQ+TKGKTDA KD RKH+ EELEQNFPDE
Sbjct: 94  IQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDE 153

Query: 159 VETFRESXXXXXXXXXXXXXXXSALPNGDVRVKAE 193
           V+ +RE                S LPNGD +VK E
Sbjct: 154 VDMYREIRASSAAVTKRLAQSQSVLPNGDAKVKNE 188


>AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10 |
           chr5:16778160-16779032 REVERSE LENGTH=186
          Length = 186

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 116/156 (74%), Gaps = 1/156 (0%)

Query: 39  ESIQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRINVLVGELDTMVKLAEKCN 98
           +S ++L+Q+  S Q+ L ++HQL LTVS++  A Q+ LLQR+N LV ELD M KL++KCN
Sbjct: 30  DSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLNSLVMELDNMAKLSDKCN 89

Query: 99  VQVPMEVVNLIDDGKNPDEFTKDVIN-NCIAKNQITKGKTDALKDFRKHLFEELEQNFPD 157
           +QVP+EV+NLIDDGKNPDEFTKDV+N NCIAKNQ+TKGK+DA K  RKHL EELEQ FPD
Sbjct: 90  IQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPD 149

Query: 158 EVETFRESXXXXXXXXXXXXXXXSALPNGDVRVKAE 193
           EV+ +R+                S LPNGD +VK+E
Sbjct: 150 EVDRYRDIRASYAAEAKRLAQTQSVLPNGDAKVKSE 185